RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 DHX29Q7Z478 1369 aaKnown RBP11.9□□□□□ -0.5
CPNE3-209ENST00000620393 TSPOAP1O95153 1857 aa11.89□□□□□ -0.51
CPNE3-209ENST00000620393 TRIM52Q96A61 297 aa11.88□□□□□ -0.51
CPNE3-209ENST00000620393 MAGI2Q86UL8 1455 aa11.88□□□□□ -0.51
CPNE3-209ENST00000620393 KDM5CP41229 1560 aa11.88□□□□□ -0.51
CPNE3-209ENST00000620393 MYCNP04198 464 aaPredicted RBP11.86□□□□□ -0.51
CPNE3-209ENST00000620393 ATP7AQ04656 1500 aa11.86□□□□□ -0.51
CPNE3-209ENST00000620393 KIF3BO15066 747 aa11.85□□□□□ -0.51
CPNE3-209ENST00000620393 DSG3P32926 999 aa11.85□□□□□ -0.51
CPNE3-209ENST00000620393 ZFYVE16Q7Z3T8 1539 aa11.85□□□□□ -0.51
CPNE3-209ENST00000620393 DUOX2Q9NRD8 1548 aa11.85□□□□□ -0.51
CPNE3-209ENST00000620393 YEATS2Q9ULM3 1422 aa11.85□□□□□ -0.51
CPNE3-209ENST00000620393 CROCC2H7BZ55 1655 aa11.84□□□□□ -0.51
CPNE3-209ENST00000620393 A2MP01023 1474 aa11.83□□□□□ -0.52
CPNE3-209ENST00000620393 ZMYM4Q5VZL5 1548 aa11.83□□□□□ -0.52
CPNE3-209ENST00000620393 CCER1Q8TC90 406 aaPredicted RBP11.83□□□□□ -0.52
CPNE3-209ENST00000620393 MPHOSPH9Q99550 1183 aa11.83□□□□□ -0.52
CPNE3-209ENST00000620393 ZNF219Q9P2Y4 722 aaPredicted RBP11.83□□□□□ -0.52
CPNE3-209ENST00000620393 ERBINQ96RT1 1412 aa11.83□□□□□ -0.52
CPNE3-209ENST00000620393 PLXNC1O60486 1568 aa11.83□□□□□ -0.52
CPNE3-209ENST00000620393 FRMPD1Q5SYB0 1578 aa11.83□□□□□ -0.52
CPNE3-209ENST00000620393 INO80Q9ULG1 1556 aaPredicted RBP11.83□□□□□ -0.52
CPNE3-209ENST00000620393 ATP10AO60312 1499 aa11.83□□□□□ -0.52
CPNE3-209ENST00000620393 NUP155O75694 1391 aa11.82□□□□□ -0.52
CPNE3-209ENST00000620393 RICTORQ6R327 1708 aa11.82□□□□□ -0.52
CPNE3-209ENST00000620393 KIDINS220Q9ULH0 1771 aa11.82□□□□□ -0.52
CPNE3-209ENST00000620393 DHX57Q6P158 1386 aaKnown RBP11.81□□□□□ -0.52
CPNE3-209ENST00000620393 HECW2Q9P2P5 1572 aa11.81□□□□□ -0.52
CPNE3-209ENST00000620393 FOXD4L1Q9NU39 408 aa11.81□□□□□ -0.52
CPNE3-209ENST00000620393 ADGBQ8N7X0 1667 aa11.81□□□□□ -0.52
CPNE3-209ENST00000620393 KDM6BO15054 1643 aa11.79□□□□□ -0.52
CPNE3-209ENST00000620393 GGT6Q6P531 493 aa11.79□□□□□ -0.52
CPNE3-209ENST00000620393 GCC2Q8IWJ2 1684 aa11.78□□□□□ -0.52
CPNE3-209ENST00000620393 DIP2CQ9Y2E4 1556 aa11.77□□□□□ -0.53
CPNE3-209ENST00000620393 PKD2Q13563 968 aa11.77□□□□□ -0.53
CPNE3-209ENST00000620393 CLSPNQ9HAW4 1339 aa11.77□□□□□ -0.53
CPNE3-209ENST00000620393 KANK1Q14678 1352 aa11.76□□□□□ -0.53
CPNE3-209ENST00000620393 ABCA6Q8N139 1617 aa11.75□□□□□ -0.53
CPNE3-209ENST00000620393 ARID4BQ4LE39 1312 aaPredicted RBP11.74□□□□□ -0.53
CPNE3-209ENST00000620393 WASHC2CQ9Y4E1 1318 aa11.74□□□□□ -0.53
CPNE3-209ENST00000620393 PZPP20742 1482 aa11.74□□□□□ -0.53
CPNE3-209ENST00000620393 AGLP35573 1532 aa11.74□□□□□ -0.53
CPNE3-209ENST00000620393 REREQ9P2R6 1566 aa11.73□□□□□ -0.53
CPNE3-209ENST00000620393 MLECQ14165 292 aa11.72□□□□□ -0.53
CPNE3-209ENST00000620393 ARHGEF40Q8TER5 1519 aa11.71□□□□□ -0.53
CPNE3-209ENST00000620393 KDM5DQ9BY66 1539 aa11.71□□□□□ -0.53
CPNE3-209ENST00000620393 ANKRD30BQ9BXX2 1392 aa11.7□□□□□ -0.54
CPNE3-209ENST00000620393 SIN3AQ96ST3 1273 aa11.7□□□□□ -0.54
CPNE3-209ENST00000620393 EIF2AK4Q9P2K8 1649 aaKnown RBP11.7□□□□□ -0.54
CPNE3-209ENST00000620393 ABCB7O75027 752 aa11.69□□□□□ -0.54
CPNE3-209ENST00000620393 ZEB1P37275 1124 aaPredicted RBP11.69□□□□□ -0.54
CPNE3-209ENST00000620393 ESF1Q9H501 851 aaKnown RBP11.69□□□□□ -0.54
CPNE3-209ENST00000620393 UNC13BO14795 1591 aa11.69□□□□□ -0.54
CPNE3-209ENST00000620393 FAM135AQ9P2D6 1515 aa11.69□□□□□ -0.54
CPNE3-209ENST00000620393 VWDEQ8N2E2 1590 aa11.67□□□□□ -0.54
CPNE3-209ENST00000620393 NEUROD1Q13562 356 aa11.67□□□□□ -0.54
CPNE3-209ENST00000620393 BCORL1Q5H9F3 1711 aa11.66□□□□□ -0.54
CPNE3-209ENST00000620393 PRDM15P57071 1507 aaPredicted RBP11.66□□□□□ -0.54
CPNE3-209ENST00000620393 LMTK2Q8IWU2 1503 aa11.66□□□□□ -0.54
CPNE3-209ENST00000620393 DEPDC5O75140 1603 aa11.66□□□□□ -0.54
CPNE3-209ENST00000620393 MROH1Q8NDA8 1641 aa11.66□□□□□ -0.54
CPNE3-209ENST00000620393 RNF17Q9BXT8 1623 aaKnown RBP11.66□□□□□ -0.54
CPNE3-209ENST00000620393 TIMELESSQ9UNS1 1208 aa11.65□□□□□ -0.54
CPNE3-209ENST00000620393 IQGAP3Q86VI3 1631 aa11.64□□□□□ -0.55
CPNE3-209ENST00000620393 ARHGAP31Q2M1Z3 1444 aa11.64□□□□□ -0.55
CPNE3-209ENST00000620393 ABCC3O15438 1527 aa11.64□□□□□ -0.55
CPNE3-209ENST00000620393 ZMYM3Q14202 1370 aa11.64□□□□□ -0.55
CPNE3-209ENST00000620393 PLA2R1Q13018 1463 aa11.63□□□□□ -0.55
CPNE3-209ENST00000620393 PTPRTO14522 1441 aa11.62□□□□□ -0.55
CPNE3-209ENST00000620393 ZBTB22O15209 634 aa11.62□□□□□ -0.55
CPNE3-209ENST00000620393 NPATQ14207 1427 aa11.61□□□□□ -0.55
CPNE3-209ENST00000620393 CNTLNQ9NXG0 1405 aa11.61□□□□□ -0.55
CPNE3-209ENST00000620393 FBXO31Q5XUX0 539 aaPredicted RBP11.61□□□□□ -0.55
CPNE3-209ENST00000620393 RPRD2Q5VT52 1461 aaKnown RBP11.61□□□□□ -0.55
CPNE3-209ENST00000620393 SIGLEC1Q9BZZ2 1709 aa11.6□□□□□ -0.55
CPNE3-209ENST00000620393 SLC52A1Q9NWF4 448 aa11.59□□□□□ -0.55
CPNE3-209ENST00000620393 NOS1P29475 1434 aa11.59□□□□□ -0.55
CPNE3-209ENST00000620393 TET3O43151 1660 aa11.59□□□□□ -0.55
CPNE3-209ENST00000620393 CEBPAP49715 358 aaPredicted RBP11.58□□□□□ -0.56
CPNE3-209ENST00000620393 EFCAB6Q5THR3 1501 aa11.58□□□□□ -0.56
CPNE3-209ENST00000620393 CCDC144AA2RUR9 1427 aa11.58□□□□□ -0.56
CPNE3-209ENST00000620393 PPP1R15AO75807 674 aaPredicted RBP11.57□□□□□ -0.56
CPNE3-209ENST00000620393 IDI1Q13907 227 aa11.57□□□□□ -0.56
CPNE3-209ENST00000620393 L3MBTL2Q969R5 705 aa11.57□□□□□ -0.56
CPNE3-209ENST00000620393 TONSLQ96HA7 1378 aa11.56□□□□□ -0.56
CPNE3-209ENST00000620393 POLA2Q14181 598 aa11.56□□□□□ -0.56
CPNE3-209ENST00000620393 RGL3Q3MIN7 710 aa11.55□□□□□ -0.56
CPNE3-209ENST00000620393 E9PCH4 1651 aa11.55□□□□□ -0.56
CPNE3-209ENST00000620393 ZC3H13Q5T200 1668 aaKnown RBP11.53□□□□□ -0.56
CPNE3-209ENST00000620393 ERVK-7P63135 1459 aa11.53□□□□□ -0.56
CPNE3-209ENST00000620393 CHGAP10645 457 aaKnown RBP11.53□□□□□ -0.56
CPNE3-209ENST00000620393 STAC3Q96MF2 364 aa11.53□□□□□ -0.56
CPNE3-209ENST00000620393 CAMSAP1Q5T5Y3 1602 aa11.53□□□□□ -0.56
CPNE3-209ENST00000620393 CEP152O94986 1710 aa11.52□□□□□ -0.56
CPNE3-209ENST00000620393 TRPM2O94759 1503 aa11.52□□□□□ -0.57
CPNE3-209ENST00000620393 DCAF11Q8TEB1 546 aa11.52□□□□□ -0.57
CPNE3-209ENST00000620393 ATF5Q9Y2D1 282 aaPredicted RBP11.52□□□□□ -0.57
CPNE3-209ENST00000620393 TNRQ92752 1358 aa11.52□□□□□ -0.57
CPNE3-209ENST00000620393 CLTCQ00610 1675 aaKnown RBP11.51□□□□□ -0.57
CPNE3-209ENST00000620393 SPATA31E1Q6ZUB1 1445 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 130.2 ms