RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 DIP2CQ9Y2E4 1556 aa20.88■□□□□ 0.93
USP39-220ENST00000613444 SIN3AQ96ST3 1273 aa20.87■□□□□ 0.93
USP39-220ENST00000613444 FAM135AQ9P2D6 1515 aa20.87■□□□□ 0.93
USP39-220ENST00000613444 MYT1LQ9UL68 1186 aa20.87■□□□□ 0.93
USP39-220ENST00000613444 A2MP01023 1474 aa20.87■□□□□ 0.93
USP39-220ENST00000613444 FOXD1Q16676 465 aa20.85■□□□□ 0.93
USP39-220ENST00000613444 BCORL1Q5H9F3 1711 aa20.85■□□□□ 0.93
USP39-220ENST00000613444 ANKRD30BQ9BXX2 1392 aa20.84■□□□□ 0.93
USP39-220ENST00000613444 MROH1Q8NDA8 1641 aa20.84■□□□□ 0.93
USP39-220ENST00000613444 YEATS2Q9ULM3 1422 aa20.83■□□□□ 0.93
USP39-220ENST00000613444 VWDEQ8N2E2 1590 aa20.81■□□□□ 0.92
USP39-220ENST00000613444 RNF17Q9BXT8 1623 aaKnown RBP20.81■□□□□ 0.92
USP39-220ENST00000613444 PRDM15P57071 1507 aaPredicted RBP20.81■□□□□ 0.92
USP39-220ENST00000613444 PKD2Q13563 968 aa20.8■□□□□ 0.92
USP39-220ENST00000613444 NEUROD1Q13562 356 aa20.79■□□□□ 0.92
USP39-220ENST00000613444 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.79■□□□□ 0.923e-6■□□□□ 10.3
USP39-220ENST00000613444 KIF3BO15066 747 aa20.78■□□□□ 0.92
USP39-220ENST00000613444 TRHP20396 242 aaPredicted RBP20.75■□□□□ 0.91
USP39-220ENST00000613444 TIMELESSQ9UNS1 1208 aa20.75■□□□□ 0.91
USP39-220ENST00000613444 REREQ9P2R6 1566 aa20.74■□□□□ 0.91
USP39-220ENST00000613444 TET3O43151 1660 aa20.73■□□□□ 0.91
USP39-220ENST00000613444 ATP10AO60312 1499 aa20.73■□□□□ 0.91
USP39-220ENST00000613444 RPRD2Q5VT52 1461 aaKnown RBP20.73■□□□□ 0.91
USP39-220ENST00000613444 E9PCH4 1651 aa20.72■□□□□ 0.91
USP39-220ENST00000613444 ARHGEF40Q8TER5 1519 aa20.72■□□□□ 0.91
USP39-220ENST00000613444 SIGLEC1Q9BZZ2 1709 aa20.7■□□□□ 0.9
USP39-220ENST00000613444 CEP152O94986 1710 aa20.7■□□□□ 0.9
USP39-220ENST00000613444 PLA2R1Q13018 1463 aa20.69■□□□□ 0.9
USP39-220ENST00000613444 LMTK2Q8IWU2 1503 aa20.69■□□□□ 0.9
USP39-220ENST00000613444 KANK1Q14678 1352 aa20.69■□□□□ 0.9
USP39-220ENST00000613444 AGLP35573 1532 aa20.67■□□□□ 0.9
USP39-220ENST00000613444 TONSLQ96HA7 1378 aa20.67■□□□□ 0.9
USP39-220ENST00000613444 EFCAB6Q5THR3 1501 aa20.65■□□□□ 0.9
USP39-220ENST00000613444 ABCC3O15438 1527 aa20.63■□□□□ 0.89
USP39-220ENST00000613444 PPP1R15AO75807 674 aaPredicted RBP20.63■□□□□ 0.89
USP39-220ENST00000613444 SPHKAPQ2M3C7 1700 aa20.63■□□□□ 0.89
USP39-220ENST00000613444 GGT6Q6P531 493 aa20.63■□□□□ 0.89
USP39-220ENST00000613444 PTPRTO14522 1441 aa20.61■□□□□ 0.89
USP39-220ENST00000613444 ZC3H13Q5T200 1668 aaKnown RBP20.61■□□□□ 0.89
USP39-220ENST00000613444 CAMSAP1Q5T5Y3 1602 aa20.59■□□□□ 0.89
USP39-220ENST00000613444 TRPM2O94759 1503 aa20.59■□□□□ 0.89
USP39-220ENST00000613444 L3MBTL2Q969R5 705 aa20.58■□□□□ 0.89
USP39-220ENST00000613444 CCDC144AA2RUR9 1427 aa20.57■□□□□ 0.88
USP39-220ENST00000613444 WASHC2CQ9Y4E1 1318 aa20.56■□□□□ 0.88
USP39-220ENST00000613444 NPATQ14207 1427 aa20.56■□□□□ 0.88
USP39-220ENST00000613444 CFAP65Q6ZU64 1925 aaKnown RBP20.55■□□□□ 0.88
USP39-220ENST00000613444 CLTCL1P53675 1640 aa20.53■□□□□ 0.88
USP39-220ENST00000613444 ARHGAP31Q2M1Z3 1444 aa20.52■□□□□ 0.88
USP39-220ENST00000613444 PPP6R1Q9UPN7 881 aa20.49■□□□□ 0.87
USP39-220ENST00000613444 CLTCQ00610 1675 aaKnown RBP20.49■□□□□ 0.87
USP39-220ENST00000613444 UGGT1Q9NYU2 1555 aa20.48■□□□□ 0.87
USP39-220ENST00000613444 SPATA31E1Q6ZUB1 1445 aa20.48■□□□□ 0.87
USP39-220ENST00000613444 NOS1P29475 1434 aa20.47■□□□□ 0.87
USP39-220ENST00000613444 CNTLNQ9NXG0 1405 aa20.45■□□□□ 0.86
USP39-220ENST00000613444 NEURL4Q96JN8 1562 aa20.45■□□□□ 0.86
USP39-220ENST00000613444 PREX1Q8TCU6 1659 aa20.45■□□□□ 0.86
USP39-220ENST00000613444 SYNMO15061 1565 aa20.44■□□□□ 0.86
USP39-220ENST00000613444 NBPF8Q3BBV2 869 aa20.44■□□□□ 0.86
USP39-220ENST00000613444 KIF1BO60333 1816 aa20.44■□□□□ 0.86
USP39-220ENST00000613444 PIK3C2BO00750 1634 aa20.43■□□□□ 0.86
USP39-220ENST00000613444 UHRF1BP1Q6BDS2 1440 aa20.42■□□□□ 0.86
USP39-220ENST00000613444 ZNF316A6NFI3 1004 aaPredicted RBP20.42■□□□□ 0.86
USP39-220ENST00000613444 MLECQ14165 292 aa20.42■□□□□ 0.86
USP39-220ENST00000613444 MROH2AA6NES4 1674 aa20.4■□□□□ 0.86
USP39-220ENST00000613444 RGL3Q3MIN7 710 aa20.39■□□□□ 0.85
USP39-220ENST00000613444 ARID4BQ4LE39 1312 aaPredicted RBP20.39■□□□□ 0.85
USP39-220ENST00000613444 DCAF11Q8TEB1 546 aa20.38■□□□□ 0.85
USP39-220ENST00000613444 ERVK-7P63135 1459 aa20.37■□□□□ 0.85
USP39-220ENST00000613444 ADGRB3O60242 1522 aa20.37■□□□□ 0.85
USP39-220ENST00000613444 IFT172Q9UG01 1749 aa20.36■□□□□ 0.85
USP39-220ENST00000613444 SPATA31D1Q6ZQQ2 1576 aa20.35■□□□□ 0.85
USP39-220ENST00000613444 FBXO31Q5XUX0 539 aaPredicted RBP20.34■□□□□ 0.85
USP39-220ENST00000613444 KDM2AQ9Y2K7 1162 aa20.34■□□□□ 0.85
USP39-220ENST00000613444 PRAG1Q86YV5 1406 aa20.34■□□□□ 0.85
USP39-220ENST00000613444 ZMYM3Q14202 1370 aa20.33■□□□□ 0.85
USP39-220ENST00000613444 RALGAPBQ86X10 1494 aa20.32■□□□□ 0.84
USP39-220ENST00000613444 TRPM1Q7Z4N2 1603 aa20.32■□□□□ 0.84
USP39-220ENST00000613444 FER1L4A9Z1Z3 1794 aa20.31■□□□□ 0.84
USP39-220ENST00000613444 MADDQ8WXG6 1647 aa20.3■□□□□ 0.84
USP39-220ENST00000613444 MYO5BQ9ULV0 1848 aa20.3■□□□□ 0.84
USP39-220ENST00000613444 IDI1Q13907 227 aa20.29■□□□□ 0.84
USP39-220ENST00000613444 ZNF326Q5BKZ1 582 aaKnown RBP20.29■□□□□ 0.84
USP39-220ENST00000613444 SLC52A1Q9NWF4 448 aa20.29■□□□□ 0.84
USP39-220ENST00000613444 PPLO60437 1756 aa20.29■□□□□ 0.84
USP39-220ENST00000613444 TMEM131LA2VDJ0 1609 aa20.28■□□□□ 0.84
USP39-220ENST00000613444 ESF1Q9H501 851 aaKnown RBP20.28■□□□□ 0.84
USP39-220ENST00000613444 STAC3Q96MF2 364 aa20.27■□□□□ 0.83
USP39-220ENST00000613444 MYOM2P54296 1465 aa20.26■□□□□ 0.83
USP39-220ENST00000613444 C3P01024 1663 aa20.26■□□□□ 0.83
USP39-220ENST00000613444 NRXN1Q9ULB1 1477 aa20.23■□□□□ 0.83
USP39-220ENST00000613444 HIRIP3Q9BW71 556 aaPredicted RBP20.22■□□□□ 0.83
USP39-220ENST00000613444 NEXMIFQ5QGS0 1516 aa20.22■□□□□ 0.83
USP39-220ENST00000613444 CHGAP10645 457 aaKnown RBP20.22■□□□□ 0.83
USP39-220ENST00000613444 ADAMTSL3P82987 1691 aa20.22■□□□□ 0.83
USP39-220ENST00000613444 GPRASP1Q5JY77 1395 aa20.22■□□□□ 0.83
USP39-220ENST00000613444 LAMC1P11047 1609 aa20.21■□□□□ 0.83
USP39-220ENST00000613444 KIAA1210Q9ULL0 1709 aa20.21■□□□□ 0.83
USP39-220ENST00000613444 HSPA5P11021 654 aaKnown RBP20.21■□□□□ 0.83
USP39-220ENST00000613444 EIF4G2P78344 907 aaKnown RBP eCLIP20.21■□□□□ 0.83
USP39-220ENST00000613444 RPGRIP1LQ68CZ1 1315 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms