RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 MYT1LQ9UL68 1186 aa18.7■□□□□ 0.58
COL6A1-207ENST00000612273 KTN1Q86UP2 1357 aaKnown RBP18.7■□□□□ 0.58
COL6A1-207ENST00000612273 MBD5Q9P267 1494 aa18.68■□□□□ 0.58
COL6A1-207ENST00000612273 RTL5Q5HYW3 569 aaPredicted RBP18.68■□□□□ 0.58
COL6A1-207ENST00000612273 ATP10BO94823 1461 aa18.67■□□□□ 0.58
COL6A1-207ENST00000612273 CCDC144AA2RUR9 1427 aa18.67■□□□□ 0.58
COL6A1-207ENST00000612273 RNF123Q5XPI4 1314 aa18.66■□□□□ 0.58
COL6A1-207ENST00000612273 EIF4G3O43432 1585 aaKnown RBP18.66■□□□□ 0.58
COL6A1-207ENST00000612273 MAGI1Q96QZ7 1491 aaPredicted RBP18.65■□□□□ 0.58
COL6A1-207ENST00000612273 ARID4BQ4LE39 1312 aaPredicted RBP18.65■□□□□ 0.58
COL6A1-207ENST00000612273 BRD4O60885 1362 aaPredicted RBP18.65■□□□□ 0.58
COL6A1-207ENST00000612273 CRBNQ96SW2 442 aa18.64■□□□□ 0.58
COL6A1-207ENST00000612273 CEP170Q5SW79 1584 aa18.64■□□□□ 0.57
COL6A1-207ENST00000612273 C20orf194Q5TEA3 1177 aa18.64■□□□□ 0.57
COL6A1-207ENST00000612273 KDM5CP41229 1560 aa18.64■□□□□ 0.57
COL6A1-207ENST00000612273 DISP3Q9P2K9 1392 aa18.63■□□□□ 0.57
COL6A1-207ENST00000612273 RALGAPBQ86X10 1494 aa18.63■□□□□ 0.57
COL6A1-207ENST00000612273 PTPRGP23470 1445 aa18.63■□□□□ 0.57
COL6A1-207ENST00000612273 PDE4AP27815 886 aa18.63■□□□□ 0.57
COL6A1-207ENST00000612273 SENP3Q9H4L4 574 aaPredicted RBP18.62■□□□□ 0.57
COL6A1-207ENST00000612273 ADAMTS8Q9UP79 889 aa18.62■□□□□ 0.57
COL6A1-207ENST00000612273 PER1O15534 1290 aaPredicted RBP18.62■□□□□ 0.57
COL6A1-207ENST00000612273 SYNJ2O15056 1496 aa18.61■□□□□ 0.57
COL6A1-207ENST00000612273 SLC4A3P48751 1232 aa18.61■□□□□ 0.57
COL6A1-207ENST00000612273 CCDC146Q8IYE0 955 aa18.61■□□□□ 0.57
COL6A1-207ENST00000612273 ADGRL2O95490 1459 aa18.6■□□□□ 0.57
COL6A1-207ENST00000612273 LRPPRCP42704 1394 aaKnown RBP18.6■□□□□ 0.57
COL6A1-207ENST00000612273 TMF1P82094 1093 aa18.59■□□□□ 0.57
COL6A1-207ENST00000612273 UHRF1BP1Q6BDS2 1440 aa18.58■□□□□ 0.56
COL6A1-207ENST00000612273 TESK2Q96S53 571 aa18.57■□□□□ 0.56
COL6A1-207ENST00000612273 WDR43Q15061 677 aaKnown RBP eCLIP18.57■□□□□ 0.56
COL6A1-207ENST00000612273 KNSTRNQ9Y448 316 aa18.57■□□□□ 0.56
COL6A1-207ENST00000612273 ITSN2Q9NZM3 1697 aa18.55■□□□□ 0.56
COL6A1-207ENST00000612273 NEFMP07197 916 aa18.54■□□□□ 0.56
COL6A1-207ENST00000612273 RGS3P49796 1198 aa18.54■□□□□ 0.56
COL6A1-207ENST00000612273 RTN4Q9NQC3 1192 aaKnown RBP18.54■□□□□ 0.56
COL6A1-207ENST00000612273 ABCC10Q5T3U5 1492 aa18.53■□□□□ 0.56
COL6A1-207ENST00000612273 PLEKHH2Q8IVE3 1493 aa18.53■□□□□ 0.56
COL6A1-207ENST00000612273 PRAG1Q86YV5 1406 aa18.53■□□□□ 0.56
COL6A1-207ENST00000612273 TCERG1O14776 1098 aaKnown RBP18.52■□□□□ 0.56
COL6A1-207ENST00000612273 TNNT2P45379 298 aaPredicted RBP18.52■□□□□ 0.56
COL6A1-207ENST00000612273 PARD3Q8TEW0 1356 aa18.52■□□□□ 0.56
COL6A1-207ENST00000612273 AFAP1Q8N556 730 aa18.51■□□□□ 0.55
COL6A1-207ENST00000612273 FAM135AQ9P2D6 1515 aa18.51■□□□□ 0.55
COL6A1-207ENST00000612273 ADGBQ8N7X0 1667 aa18.5■□□□□ 0.55
COL6A1-207ENST00000612273 NEUROD2Q15784 382 aa18.5■□□□□ 0.55
COL6A1-207ENST00000612273 BACH2Q9BYV9 841 aa18.5■□□□□ 0.55
COL6A1-207ENST00000612273 PDE3BQ13370 1112 aa18.49■□□□□ 0.55
COL6A1-207ENST00000612273 CCDC141Q6ZP82 1450 aa18.49■□□□□ 0.55
COL6A1-207ENST00000612273 CHGAP10645 457 aaKnown RBP18.48■□□□□ 0.55
COL6A1-207ENST00000612273 ARHGAP5Q13017 1502 aa18.48■□□□□ 0.55
COL6A1-207ENST00000612273 CDC42BPAQ5VT25 1732 aa18.48■□□□□ 0.55
COL6A1-207ENST00000612273 PLA2R1Q13018 1463 aa18.48■□□□□ 0.55
COL6A1-207ENST00000612273 NUP160Q12769 1436 aa18.47■□□□□ 0.55
COL6A1-207ENST00000612273 ERBINQ96RT1 1412 aa18.47■□□□□ 0.55
COL6A1-207ENST00000612273 A2MP01023 1474 aa18.47■□□□□ 0.55
COL6A1-207ENST00000612273 PPP2R1AP30153 589 aa18.47■□□□□ 0.55
COL6A1-207ENST00000612273 POLR1AO95602 1720 aaPredicted RBP18.46■□□□□ 0.55
COL6A1-207ENST00000612273 SYCP2Q9BX26 1530 aa18.46■□□□□ 0.55
COL6A1-207ENST00000612273 APAF1O14727 1248 aa18.45■□□□□ 0.54
COL6A1-207ENST00000612273 ARHGEF12Q9NZN5 1544 aa18.45■□□□□ 0.54
COL6A1-207ENST00000612273 RSPH4AQ5TD94 716 aa18.44■□□□□ 0.54
COL6A1-207ENST00000612273 DAXXQ9UER7 740 aaPredicted RBP18.44■□□□□ 0.54
COL6A1-207ENST00000612273 CROCC2H7BZ55 1655 aa18.42■□□□□ 0.54
COL6A1-207ENST00000612273 PLEKHH1Q9ULM0 1364 aa18.42■□□□□ 0.54
COL6A1-207ENST00000612273 SPINK5Q9NQ38 1064 aaPredicted RBP18.41■□□□□ 0.54
COL6A1-207ENST00000612273 SHANK2Q9UPX8 1470 aa18.41■□□□□ 0.54
COL6A1-207ENST00000612273 BCAR3O75815 825 aa18.41■□□□□ 0.54
COL6A1-207ENST00000612273 GOLGA2Q08379 1002 aa18.41■□□□□ 0.54
COL6A1-207ENST00000612273 ABCA8O94911 1581 aa18.41■□□□□ 0.54
COL6A1-207ENST00000612273 KDM5DQ9BY66 1539 aa18.4■□□□□ 0.54
COL6A1-207ENST00000612273 IL27Q8NEV9 243 aa18.4■□□□□ 0.54
COL6A1-207ENST00000612273 CFAP70Q5T0N1 1121 aa18.4■□□□□ 0.54
COL6A1-207ENST00000612273 SAMD9LQ8IVG5 1584 aa18.39■□□□□ 0.53
COL6A1-207ENST00000612273 EFCAB2Q5VUJ9 269 aa18.39■□□□□ 0.53
COL6A1-207ENST00000612273 RRP7AQ9Y3A4 280 aaKnown RBP18.39■□□□□ 0.53
COL6A1-207ENST00000612273 KIF3BO15066 747 aa18.39■□□□□ 0.53
COL6A1-207ENST00000612273 DUSP27Q5VZP5 1158 aa18.39■□□□□ 0.53
COL6A1-207ENST00000612273 CANXP27824 592 aaKnown RBP18.37■□□□□ 0.53
COL6A1-207ENST00000612273 AMER1Q5JTC6 1135 aaPredicted RBP18.37■□□□□ 0.53
COL6A1-207ENST00000612273 DMRT2Q9Y5R5 561 aa18.37■□□□□ 0.53
COL6A1-207ENST00000612273 SPAG9O60271 1321 aaKnown RBP18.37■□□□□ 0.53
COL6A1-207ENST00000612273 ADCY10Q96PN6 1610 aa18.36■□□□□ 0.53
COL6A1-207ENST00000612273 COL17A1Q9UMD9 1497 aaPredicted RBP18.36■□□□□ 0.53
COL6A1-207ENST00000612273 FRAT1Q92837 279 aaPredicted RBP18.36■□□□□ 0.53
COL6A1-207ENST00000612273 NUTM2DQ5VT03 806 aaPredicted RBP18.36■□□□□ 0.53
COL6A1-207ENST00000612273 MS4A1P11836 297 aa18.34■□□□□ 0.53
COL6A1-207ENST00000612273 MAGI2Q86UL8 1455 aa18.34■□□□□ 0.53
COL6A1-207ENST00000612273 BCL2L13Q9BXK5 485 aa18.34■□□□□ 0.53
COL6A1-207ENST00000612273 GPRASP1Q5JY77 1395 aa18.32■□□□□ 0.52
COL6A1-207ENST00000612273 WASHC2CQ9Y4E1 1318 aa18.32■□□□□ 0.52
COL6A1-207ENST00000612273 TRAPPC8Q9Y2L5 1435 aa18.31■□□□□ 0.52
COL6A1-207ENST00000612273 TRAK1Q9UPV9 953 aa18.3■□□□□ 0.52
COL6A1-207ENST00000612273 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.3■□□□□ 0.52
COL6A1-207ENST00000612273 PANK1Q8TE04 598 aa18.3■□□□□ 0.52
COL6A1-207ENST00000612273 COG6Q9Y2V7 657 aa18.3■□□□□ 0.52
COL6A1-207ENST00000612273 SAFB2Q14151 953 aaKnown RBP eCLIP18.29■□□□□ 0.52
COL6A1-207ENST00000612273 TTC37Q6PGP7 1564 aa18.29■□□□□ 0.52
COL6A1-207ENST00000612273 TRPM1Q7Z4N2 1603 aa18.29■□□□□ 0.52
COL6A1-207ENST00000612273 CLUAP1Q96AJ1 413 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms