RNA–Protein interactions for RNA: ENST00000611869.4

TCF3-220, Transcript of transcription factor 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCF3, Length 4,409 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF3-220ENST00000611869 U2AF1L5P0DN76 240 aaPredicted RBP17.07■□□□□ 0.32
TCF3-220ENST00000611869 U2AF1Q01081 240 aaKnown RBP eCLIP17.07■□□□□ 0.32
TCF3-220ENST00000611869 KIAA1107Q9UPP5 1409 aa17.07■□□□□ 0.32
TCF3-220ENST00000611869 NBPF1Q3BBV0 1214 aa17.06■□□□□ 0.32
TCF3-220ENST00000611869 PTPN23Q9H3S7 1636 aa17.05■□□□□ 0.32
TCF3-220ENST00000611869 MYH16Q9H6N6 1097 aa17.04■□□□□ 0.32
TCF3-220ENST00000611869 ABCC5O15440 1437 aa17.03■□□□□ 0.32
TCF3-220ENST00000611869 PTPRKQ15262 1439 aa17.03■□□□□ 0.32
TCF3-220ENST00000611869 CCDC184Q52MB2 194 aa17.02■□□□□ 0.32
TCF3-220ENST00000611869 GOLGA2Q08379 1002 aa17.02■□□□□ 0.31
TCF3-220ENST00000611869 ARHGEF11O15085 1522 aa17.01■□□□□ 0.31
TCF3-220ENST00000611869 HDGFL2Q7Z4V5 671 aaPredicted RBP17.01■□□□□ 0.31
TCF3-220ENST00000611869 ROCK1Q13464 1354 aa17.01■□□□□ 0.31
TCF3-220ENST00000611869 TRHP20396 242 aaPredicted RBP17■□□□□ 0.31
TCF3-220ENST00000611869 PDE3BQ13370 1112 aa17■□□□□ 0.31
TCF3-220ENST00000611869 DDRGK1Q96HY6 314 aa16.99■□□□□ 0.31
TCF3-220ENST00000611869 HDGFP51858 240 aaKnown RBP16.99■□□□□ 0.31
TCF3-220ENST00000611869 NOP58Q9Y2X3 529 aaKnown RBP16.99■□□□□ 0.31
TCF3-220ENST00000611869 C11orf95C9JLR9 678 aaPredicted RBP16.98■□□□□ 0.31
TCF3-220ENST00000611869 ANKRD30BQ9BXX2 1392 aa16.98■□□□□ 0.31
TCF3-220ENST00000611869 PLIN1O60240 522 aa16.98■□□□□ 0.31
TCF3-220ENST00000611869 MAGI1Q96QZ7 1491 aaPredicted RBP16.97■□□□□ 0.31
TCF3-220ENST00000611869 CAMSAP2Q08AD1 1489 aa16.97■□□□□ 0.31
TCF3-220ENST00000611869 RRP7AQ9Y3A4 280 aaKnown RBP16.96■□□□□ 0.31
TCF3-220ENST00000611869 THOC2Q8NI27 1593 aaKnown RBP16.96■□□□□ 0.31
TCF3-220ENST00000611869 LMOD2Q6P5Q4 547 aa16.96■□□□□ 0.31
TCF3-220ENST00000611869 ARXQ96QS3 562 aa16.96■□□□□ 0.31
TCF3-220ENST00000611869 MAPKBP1O60336 1514 aa16.95■□□□□ 0.3
TCF3-220ENST00000611869 VGFO15240 615 aaPredicted RBP16.95■□□□□ 0.3
TCF3-220ENST00000611869 CFAP70Q5T0N1 1121 aa16.95■□□□□ 0.3
TCF3-220ENST00000611869 PNNQ9H307 717 aaKnown RBP16.94■□□□□ 0.3
TCF3-220ENST00000611869 TERF2IPQ9NYB0 399 aa16.94■□□□□ 0.3
TCF3-220ENST00000611869 NCOA1Q15788 1441 aa16.94■□□□□ 0.3
TCF3-220ENST00000611869 EXOC6Q8TAG9 804 aa16.93■□□□□ 0.3
TCF3-220ENST00000611869 TMEM132EQ6IEE7 984 aa16.92■□□□□ 0.3
TCF3-220ENST00000611869 SCAPERQ9BY12 1400 aa16.92■□□□□ 0.3
TCF3-220ENST00000611869 APAF1O14727 1248 aa16.92■□□□□ 0.3
TCF3-220ENST00000611869 AKNAQ7Z591 1439 aa16.92■□□□□ 0.3
TCF3-220ENST00000611869 BECN1Q14457 450 aa16.92■□□□□ 0.3
TCF3-220ENST00000611869 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.92■□□□□ 0.3
TCF3-220ENST00000611869 NUTM2FA1L443 756 aa16.91■□□□□ 0.3
TCF3-220ENST00000611869 CLUAP1Q96AJ1 413 aa16.91■□□□□ 0.3
TCF3-220ENST00000611869 MINK1Q8N4C8 1332 aaPredicted RBP16.91■□□□□ 0.3
TCF3-220ENST00000611869 RRP1P56182 461 aaKnown RBP16.9■□□□□ 0.3
TCF3-220ENST00000611869 MS4A1P11836 297 aa16.9■□□□□ 0.3
TCF3-220ENST00000611869 CENPJQ9HC77 1338 aaPredicted RBP16.89■□□□□ 0.29
TCF3-220ENST00000611869 FAM69CQ0P6D2 419 aa16.89■□□□□ 0.29
TCF3-220ENST00000611869 TCERG1O14776 1098 aaKnown RBP16.88■□□□□ 0.29
TCF3-220ENST00000611869 EVC2Q86UK5 1308 aa16.87■□□□□ 0.29
TCF3-220ENST00000611869 UGGT2Q9NYU1 1516 aa16.87■□□□□ 0.29
TCF3-220ENST00000611869 STAC3Q96MF2 364 aa16.87■□□□□ 0.29
TCF3-220ENST00000611869 PLEKHH2Q8IVE3 1493 aa16.86■□□□□ 0.29
TCF3-220ENST00000611869 CCDC141Q6ZP82 1450 aa16.86■□□□□ 0.29
TCF3-220ENST00000611869 CGNL1Q0VF96 1302 aa16.86■□□□□ 0.29
TCF3-220ENST00000611869 BCL2L13Q9BXK5 485 aa16.86■□□□□ 0.29
TCF3-220ENST00000611869 CTTNBP2Q8WZ74 1663 aa16.85■□□□□ 0.29
TCF3-220ENST00000611869 NUP153P49790 1475 aaKnown RBP16.85■□□□□ 0.29
TCF3-220ENST00000611869 GPATCH8Q9UKJ3 1502 aaKnown RBP16.85■□□□□ 0.29
TCF3-220ENST00000611869 BRD4O60885 1362 aaPredicted RBP16.85■□□□□ 0.29
TCF3-220ENST00000611869 ADAMTS8Q9UP79 889 aa16.84■□□□□ 0.29
TCF3-220ENST00000611869 CDCA7LQ96GN5 454 aa16.84■□□□□ 0.29
TCF3-220ENST00000611869 CRBNQ96SW2 442 aa16.84■□□□□ 0.29
TCF3-220ENST00000611869 PNISRQ8TF01 805 aaKnown RBP16.84■□□□□ 0.29
TCF3-220ENST00000611869 SMC4Q9NTJ3 1288 aa16.83■□□□□ 0.28
TCF3-220ENST00000611869 RPRD2Q5VT52 1461 aaKnown RBP16.82■□□□□ 0.28
TCF3-220ENST00000611869 RAPGEF3O95398 923 aa16.82■□□□□ 0.28
TCF3-220ENST00000611869 ITPRIPQ8IWB1 547 aa16.82■□□□□ 0.28
TCF3-220ENST00000611869 KIF14Q15058 1648 aa16.81■□□□□ 0.28
TCF3-220ENST00000611869 PAK3O75914 559 aaPredicted RBP16.8■□□□□ 0.28
TCF3-220ENST00000611869 KIF21AQ7Z4S6 1674 aa16.8■□□□□ 0.28
TCF3-220ENST00000611869 CABP2Q9NPB3 220 aa16.79■□□□□ 0.28
TCF3-220ENST00000611869 E9PSI1 815 aa16.79■□□□□ 0.28
TCF3-220ENST00000611869 IPO8O15397 1037 aaKnown RBP16.79■□□□□ 0.28
TCF3-220ENST00000611869 CFAP43Q8NDM7 1665 aa16.78■□□□□ 0.28
TCF3-220ENST00000611869 ATP10BO94823 1461 aa16.78■□□□□ 0.28
TCF3-220ENST00000611869 A0A0G2JS52 829 aa16.78■□□□□ 0.28
TCF3-220ENST00000611869 PPP2R1AP30153 589 aa16.78■□□□□ 0.28
TCF3-220ENST00000611869 CHMP4BQ9H444 224 aaKnown RBP16.78■□□□□ 0.28
TCF3-220ENST00000611869 ADAMTS12P58397 1594 aa16.78■□□□□ 0.28
TCF3-220ENST00000611869 RAPGEF6Q8TEU7 1601 aa16.78■□□□□ 0.28
TCF3-220ENST00000611869 RTF1Q92541 710 aaKnown RBP16.76■□□□□ 0.27
TCF3-220ENST00000611869 RWDD1Q9H446 243 aaPredicted RBP16.76■□□□□ 0.27
TCF3-220ENST00000611869 EID1Q9Y6B2 187 aa16.76■□□□□ 0.27
TCF3-220ENST00000611869 SLC12A5Q9H2X9 1139 aa16.76■□□□□ 0.27
TCF3-220ENST00000611869 GGNBP2Q9H3C7 697 aa16.76■□□□□ 0.27
TCF3-220ENST00000611869 COG6Q9Y2V7 657 aa16.76■□□□□ 0.27
TCF3-220ENST00000611869 HAP1P54257 671 aaPredicted RBP16.75■□□□□ 0.27
TCF3-220ENST00000611869 ELL2O00472 640 aaPredicted RBP16.74■□□□□ 0.27
TCF3-220ENST00000611869 NGDNQ8NEJ9 315 aaKnown RBP16.74■□□□□ 0.27
TCF3-220ENST00000611869 APBB1O00213 710 aa16.74■□□□□ 0.27
TCF3-220ENST00000611869 ERBINQ96RT1 1412 aa16.74■□□□□ 0.27
TCF3-220ENST00000611869 CALD1Q05682 793 aaKnown RBP16.73■□□□□ 0.27
TCF3-220ENST00000611869 IPO9Q96P70 1041 aaKnown RBP16.73■□□□□ 0.27
TCF3-220ENST00000611869 ANP32BQ92688 251 aaKnown RBP16.73■□□□□ 0.27
TCF3-220ENST00000611869 WDR62O43379 1518 aa16.73■□□□□ 0.27
TCF3-220ENST00000611869 PDE4AP27815 886 aa16.72■□□□□ 0.27
TCF3-220ENST00000611869 MTHFSP49914 203 aa16.72■□□□□ 0.27
TCF3-220ENST00000611869 SPRYD3Q8NCJ5 442 aa16.72■□□□□ 0.27
TCF3-220ENST00000611869 KIAA0556O60303 1618 aa16.72■□□□□ 0.27
TCF3-220ENST00000611869 PMFBP1Q8TBY8 1022 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms