RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 PKD2Q13563 968 aa20.82■□□□□ 0.92
RPS28-204ENST00000602140 MAP3K1Q13233 1512 aa20.81■□□□□ 0.92
RPS28-204ENST00000602140 KDM5DQ9BY66 1539 aa20.81■□□□□ 0.92
RPS28-204ENST00000602140 WASHC2CQ9Y4E1 1318 aa20.8■□□□□ 0.92
RPS28-204ENST00000602140 FBXO31Q5XUX0 539 aaPredicted RBP20.8■□□□□ 0.92
RPS28-204ENST00000602140 A2ML1A8K2U0 1454 aa20.8■□□□□ 0.92
RPS28-204ENST00000602140 TCOF1Q13428 1488 aaKnown RBP20.79■□□□□ 0.92
RPS28-204ENST00000602140 FAM135AQ9P2D6 1515 aa20.78■□□□□ 0.92
RPS28-204ENST00000602140 TNRQ92752 1358 aa20.78■□□□□ 0.92
RPS28-204ENST00000602140 PZPP20742 1482 aa20.77■□□□□ 0.92
RPS28-204ENST00000602140 MYOM3Q5VTT5 1437 aa20.77■□□□□ 0.91
RPS28-204ENST00000602140 ZNF335Q9H4Z2 1342 aaPredicted RBP20.77■□□□□ 0.91
RPS28-204ENST00000602140 DNMT1P26358 1616 aaKnown RBP20.76■□□□□ 0.91
RPS28-204ENST00000602140 MIA2Q96PC5 1412 aa20.76■□□□□ 0.91
RPS28-204ENST00000602140 IQSEC2Q5JU85 1478 aa20.75■□□□□ 0.91
RPS28-204ENST00000602140 MAST1Q9Y2H9 1570 aa20.75■□□□□ 0.91
RPS28-204ENST00000602140 APLP2Q06481 763 aa20.7■□□□□ 0.9
RPS28-204ENST00000602140 RNF17Q9BXT8 1623 aaKnown RBP20.7■□□□□ 0.9
RPS28-204ENST00000602140 NLRP1Q9C000 1473 aa20.68■□□□□ 0.9
RPS28-204ENST00000602140 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.67■□□□□ 0.96e-8■■■■□ 21.9
RPS28-204ENST00000602140 ABCC3O15438 1527 aa20.67■□□□□ 0.9
RPS28-204ENST00000602140 EIF2AK4Q9P2K8 1649 aaKnown RBP20.67■□□□□ 0.9
RPS28-204ENST00000602140 THEMISQ8N1K5 641 aaPredicted RBP20.66■□□□□ 0.9
RPS28-204ENST00000602140 POLR1AO95602 1720 aaPredicted RBP20.65■□□□□ 0.9
RPS28-204ENST00000602140 ANKLE2Q86XL3 938 aa20.65■□□□□ 0.9
RPS28-204ENST00000602140 ZC3H13Q5T200 1668 aaKnown RBP20.64■□□□□ 0.9
RPS28-204ENST00000602140 NEURL4Q96JN8 1562 aa20.64■□□□□ 0.9
RPS28-204ENST00000602140 UGGT1Q9NYU2 1555 aa20.64■□□□□ 0.9
RPS28-204ENST00000602140 DUOX2Q9NRD8 1548 aa20.64■□□□□ 0.9
RPS28-204ENST00000602140 UBAP1LF5GYI3 381 aa20.64■□□□□ 0.89
RPS28-204ENST00000602140 MROH1Q8NDA8 1641 aa20.64■□□□□ 0.89
RPS28-204ENST00000602140 ABCC5O15440 1437 aa20.62■□□□□ 0.89
RPS28-204ENST00000602140 DISP3Q9P2K9 1392 aa20.62■□□□□ 0.89
RPS28-204ENST00000602140 PTPN23Q9H3S7 1636 aa20.62■□□□□ 0.89
RPS28-204ENST00000602140 KIF15Q9NS87 1388 aa20.61■□□□□ 0.89
RPS28-204ENST00000602140 SPATA31D1Q6ZQQ2 1576 aa20.61■□□□□ 0.89
RPS28-204ENST00000602140 RRP7BPQ9NSQ0 103 aa20.61■□□□□ 0.89
RPS28-204ENST00000602140 ERVK-7P63135 1459 aa20.6■□□□□ 0.89
RPS28-204ENST00000602140 SHANK2Q9UPX8 1470 aa20.6■□□□□ 0.89
RPS28-204ENST00000602140 CROCC2H7BZ55 1655 aa20.59■□□□□ 0.89
RPS28-204ENST00000602140 CEP152O94986 1710 aa20.58■□□□□ 0.89
RPS28-204ENST00000602140 DAPK1P53355 1430 aa20.58■□□□□ 0.88
RPS28-204ENST00000602140 FGD6Q6ZV73 1430 aa20.58■□□□□ 0.88
RPS28-204ENST00000602140 NPHP4O75161 1426 aaPredicted RBP20.57■□□□□ 0.88
RPS28-204ENST00000602140 ERBINQ96RT1 1412 aa20.57■□□□□ 0.88
RPS28-204ENST00000602140 DEPDC5O75140 1603 aa20.56■□□□□ 0.88
RPS28-204ENST00000602140 MED14O60244 1454 aa20.56■□□□□ 0.88
RPS28-204ENST00000602140 CPS1P31327 1500 aa20.55■□□□□ 0.88
RPS28-204ENST00000602140 PRDM15P57071 1507 aaPredicted RBP20.54■□□□□ 0.88
RPS28-204ENST00000602140 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.54■□□□□ 0.88
RPS28-204ENST00000602140 CHIC2Q9UKJ5 165 aa20.53■□□□□ 0.88
RPS28-204ENST00000602140 VWDEQ8N2E2 1590 aa20.53■□□□□ 0.88
RPS28-204ENST00000602140 ILDR2Q71H61 639 aa20.52■□□□□ 0.88
RPS28-204ENST00000602140 CFAP65Q6ZU64 1925 aaKnown RBP20.52■□□□□ 0.88
RPS28-204ENST00000602140 ARHGAP31Q2M1Z3 1444 aa20.51■□□□□ 0.87
RPS28-204ENST00000602140 IQGAP1P46940 1657 aa20.51■□□□□ 0.87
RPS28-204ENST00000602140 ANKRD30AQ9BXX3 1397 aa20.5■□□□□ 0.87
RPS28-204ENST00000602140 SCAF1Q9H7N4 1312 aaKnown RBP20.5■□□□□ 0.87
RPS28-204ENST00000602140 UBR1Q8IWV7 1749 aa20.49■□□□□ 0.87
RPS28-204ENST00000602140 KANK1Q14678 1352 aa20.48■□□□□ 0.87
RPS28-204ENST00000602140 TOM1O60784 492 aa20.48■□□□□ 0.87
RPS28-204ENST00000602140 PIP4K2BP78356 416 aa20.48■□□□□ 0.87
RPS28-204ENST00000602140 FAM50AQ14320 339 aaKnown RBP20.45■□□□□ 0.86
RPS28-204ENST00000602140 SCAF11Q99590 1463 aaKnown RBP20.44■□□□□ 0.86
RPS28-204ENST00000602140 LTKP29376 864 aa20.44■□□□□ 0.86
RPS28-204ENST00000602140 TXNDC2Q86VQ3 553 aa20.44■□□□□ 0.86
RPS28-204ENST00000602140 ARHGAP23Q9P227 1491 aa20.43■□□□□ 0.86
RPS28-204ENST00000602140 SLIT1O75093 1534 aa20.43■□□□□ 0.86
RPS28-204ENST00000602140 HSPA1LP34931 641 aa20.42■□□□□ 0.86
RPS28-204ENST00000602140 LMTK2Q8IWU2 1503 aa20.42■□□□□ 0.86
RPS28-204ENST00000602140 STRCP1A6NGW2 1772 aa20.41■□□□□ 0.86
RPS28-204ENST00000602140 STAG3Q9UJ98 1225 aa20.41■□□□□ 0.86
RPS28-204ENST00000602140 ADGRL2O95490 1459 aa20.41■□□□□ 0.86
RPS28-204ENST00000602140 PIK3C2BO00750 1634 aa20.41■□□□□ 0.86
RPS28-204ENST00000602140 EID1Q9Y6B2 187 aa20.4■□□□□ 0.86
RPS28-204ENST00000602140 LRRC7Q96NW7 1537 aa20.39■□□□□ 0.85
RPS28-204ENST00000602140 IDI1Q13907 227 aa20.38■□□□□ 0.85
RPS28-204ENST00000602140 TMEM2Q9UHN6 1383 aa20.37■□□□□ 0.85
RPS28-204ENST00000602140 SOCS7O14512 581 aa20.37■□□□□ 0.85
RPS28-204ENST00000602140 ALKQ9UM73 1620 aa20.37■□□□□ 0.85
RPS28-204ENST00000602140 SYNMO15061 1565 aa20.36■□□□□ 0.85
RPS28-204ENST00000602140 EFCAB6Q5THR3 1501 aa20.35■□□□□ 0.85
RPS28-204ENST00000602140 ANKRD50Q9ULJ7 1429 aa20.35■□□□□ 0.85
RPS28-204ENST00000602140 NOS1P29475 1434 aa20.34■□□□□ 0.85
RPS28-204ENST00000602140 KDM5AP29375 1690 aaKnown RBP20.32■□□□□ 0.84
RPS28-204ENST00000602140 SLC52A1Q9NWF4 448 aa20.3■□□□□ 0.84
RPS28-204ENST00000602140 ADGRB3O60242 1522 aa20.28■□□□□ 0.84
RPS28-204ENST00000602140 SENP3Q9H4L4 574 aaPredicted RBP20.28■□□□□ 0.84
RPS28-204ENST00000602140 RPRD2Q5VT52 1461 aaKnown RBP20.28■□□□□ 0.84
RPS28-204ENST00000602140 MED1Q15648 1581 aaPredicted RBP20.27■□□□□ 0.84
RPS28-204ENST00000602140 SLC26A8Q96RN1 970 aa20.27■□□□□ 0.84
RPS28-204ENST00000602140 TET3O43151 1660 aa20.25■□□□□ 0.83
RPS28-204ENST00000602140 XIRP1Q702N8 1843 aaKnown RBP20.23■□□□□ 0.83
RPS28-204ENST00000602140 KCNA6P17658 529 aa20.23■□□□□ 0.83
RPS28-204ENST00000602140 ROCK1Q13464 1354 aa20.22■□□□□ 0.83
RPS28-204ENST00000602140 UNC13BO14795 1591 aa20.22■□□□□ 0.83
RPS28-204ENST00000602140 BCANQ96GW7 911 aa20.22■□□□□ 0.83
RPS28-204ENST00000602140 PPARGC1BQ86YN6 1023 aaKnown RBP20.21■□□□□ 0.83
RPS28-204ENST00000602140 TMEM94Q12767 1356 aa20.21■□□□□ 0.83
RPS28-204ENST00000602140 GCC2Q8IWJ2 1684 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms