RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 PKD2Q13563 968 aa27.64■■■□□ 2.02
SHKBP1-223ENST00000600552 TNRQ92752 1358 aa27.63■■■□□ 2.01
SHKBP1-223ENST00000600552 ZNF142P52746 1687 aaPredicted RBP27.63■■■□□ 2.01
SHKBP1-223ENST00000600552 ZNF335Q9H4Z2 1342 aaPredicted RBP27.63■■■□□ 2.01
SHKBP1-223ENST00000600552 LTBP4Q8N2S1 1624 aa27.61■■■□□ 2.01
SHKBP1-223ENST00000600552 KDM5DQ9BY66 1539 aa27.61■■■□□ 2.01
SHKBP1-223ENST00000600552 MYOM3Q5VTT5 1437 aa27.6■■■□□ 2.01
SHKBP1-223ENST00000600552 A2ML1A8K2U0 1454 aa27.6■■■□□ 2.01
SHKBP1-223ENST00000600552 MAP3K1Q13233 1512 aa27.59■■■□□ 2.01
SHKBP1-223ENST00000600552 PLA2R1Q13018 1463 aa27.57■■■□□ 2
SHKBP1-223ENST00000600552 PZPP20742 1482 aa27.56■■■□□ 2
SHKBP1-223ENST00000600552 DNMT1P26358 1616 aaKnown RBP27.56■■■□□ 2
SHKBP1-223ENST00000600552 MIA2Q96PC5 1412 aa27.55■■■□□ 2
SHKBP1-223ENST00000600552 TCOF1Q13428 1488 aaKnown RBP27.53■■■□□ 2
SHKBP1-223ENST00000600552 MAST1Q9Y2H9 1570 aa27.52■■■□□ 2
SHKBP1-223ENST00000600552 UBAP1LF5GYI3 381 aa27.5■■□□□ 1.99
SHKBP1-223ENST00000600552 RRP7BPQ9NSQ0 103 aa27.5■■□□□ 1.99
SHKBP1-223ENST00000600552 CFAP65Q6ZU64 1925 aaKnown RBP27.49■■□□□ 1.99
SHKBP1-223ENST00000600552 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.48■■□□□ 1.99
SHKBP1-223ENST00000600552 FAM135AQ9P2D6 1515 aa27.48■■□□□ 1.99
SHKBP1-223ENST00000600552 THEMISQ8N1K5 641 aaPredicted RBP27.48■■□□□ 1.99
SHKBP1-223ENST00000600552 ANKLE2Q86XL3 938 aa27.47■■□□□ 1.99
SHKBP1-223ENST00000600552 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.47■■□□□ 1.99
SHKBP1-223ENST00000600552 CHIC2Q9UKJ5 165 aa27.45■■□□□ 1.98
SHKBP1-223ENST00000600552 ABCC3O15438 1527 aa27.45■■□□□ 1.98
SHKBP1-223ENST00000600552 DISP3Q9P2K9 1392 aa27.45■■□□□ 1.98
SHKBP1-223ENST00000600552 RNF17Q9BXT8 1623 aaKnown RBP27.45■■□□□ 1.98
SHKBP1-223ENST00000600552 PTPN23Q9H3S7 1636 aa27.44■■□□□ 1.98
SHKBP1-223ENST00000600552 IQSEC2Q5JU85 1478 aa27.44■■□□□ 1.98
SHKBP1-223ENST00000600552 KIF15Q9NS87 1388 aa27.43■■□□□ 1.98
SHKBP1-223ENST00000600552 ABCC5O15440 1437 aa27.42■■□□□ 1.98
SHKBP1-223ENST00000600552 POLR1AO95602 1720 aaPredicted RBP27.42■■□□□ 1.98
SHKBP1-223ENST00000600552 UGGT1Q9NYU2 1555 aa27.42■■□□□ 1.98
SHKBP1-223ENST00000600552 DUOX2Q9NRD8 1548 aa27.41■■□□□ 1.98
SHKBP1-223ENST00000600552 NLRP1Q9C000 1473 aa27.41■■□□□ 1.98
SHKBP1-223ENST00000600552 CEP152O94986 1710 aa27.41■■□□□ 1.98
SHKBP1-223ENST00000600552 EIF2AK4Q9P2K8 1649 aaKnown RBP27.41■■□□□ 1.98
SHKBP1-223ENST00000600552 SCAF1Q9H7N4 1312 aaKnown RBP27.39■■□□□ 1.97
SHKBP1-223ENST00000600552 ZC3H13Q5T200 1668 aaKnown RBP27.37■■□□□ 1.97
SHKBP1-223ENST00000600552 NEURL4Q96JN8 1562 aa27.37■■□□□ 1.97
SHKBP1-223ENST00000600552 DAPK1P53355 1430 aa27.36■■□□□ 1.97
SHKBP1-223ENST00000600552 FGD6Q6ZV73 1430 aa27.36■■□□□ 1.97
SHKBP1-223ENST00000600552 MROH1Q8NDA8 1641 aa27.36■■□□□ 1.97
SHKBP1-223ENST00000600552 ERVK-7P63135 1459 aa27.35■■□□□ 1.97
SHKBP1-223ENST00000600552 CROCC2H7BZ55 1655 aa27.34■■□□□ 1.97
SHKBP1-223ENST00000600552 FAM50AQ14320 339 aaKnown RBP27.34■■□□□ 1.97
SHKBP1-223ENST00000600552 NPHP4O75161 1426 aaPredicted RBP27.33■■□□□ 1.97
SHKBP1-223ENST00000600552 PIP4K2BP78356 416 aa27.33■■□□□ 1.97
SHKBP1-223ENST00000600552 SHANK2Q9UPX8 1470 aa27.32■■□□□ 1.96
SHKBP1-223ENST00000600552 SPATA31D1Q6ZQQ2 1576 aa27.32■■□□□ 1.96
SHKBP1-223ENST00000600552 KANK1Q14678 1352 aa27.29■■□□□ 1.96
SHKBP1-223ENST00000600552 ERBINQ96RT1 1412 aa27.29■■□□□ 1.96
SHKBP1-223ENST00000600552 ANKRD30AQ9BXX3 1397 aa27.28■■□□□ 1.96
SHKBP1-223ENST00000600552 ILDR2Q71H61 639 aa27.26■■□□□ 1.95
SHKBP1-223ENST00000600552 STAG3Q9UJ98 1225 aa27.25■■□□□ 1.95
SHKBP1-223ENST00000600552 CPS1P31327 1500 aa27.25■■□□□ 1.95
SHKBP1-223ENST00000600552 TOM1O60784 492 aa27.24■■□□□ 1.95
SHKBP1-223ENST00000600552 IQGAP1P46940 1657 aa27.24■■□□□ 1.95
SHKBP1-223ENST00000600552 DEPDC5O75140 1603 aa27.23■■□□□ 1.95
SHKBP1-223ENST00000600552 PRDM15P57071 1507 aaPredicted RBP27.23■■□□□ 1.95
SHKBP1-223ENST00000600552 TXNDC2Q86VQ3 553 aa27.23■■□□□ 1.95
SHKBP1-223ENST00000600552 VWDEQ8N2E2 1590 aa27.22■■□□□ 1.95
SHKBP1-223ENST00000600552 MED14O60244 1454 aa27.22■■□□□ 1.95
SHKBP1-223ENST00000600552 SENP3Q9H4L4 574 aaPredicted RBP27.21■■□□□ 1.95
SHKBP1-223ENST00000600552 UBR1Q8IWV7 1749 aa27.21■■□□□ 1.95
SHKBP1-223ENST00000600552 LTKP29376 864 aa27.19■■□□□ 1.94
SHKBP1-223ENST00000600552 ARHGAP31Q2M1Z3 1444 aa27.18■■□□□ 1.94
SHKBP1-223ENST00000600552 HSPA1LP34931 641 aa27.17■■□□□ 1.94
SHKBP1-223ENST00000600552 EID1Q9Y6B2 187 aa27.17■■□□□ 1.94
SHKBP1-223ENST00000600552 SCAF11Q99590 1463 aaKnown RBP27.15■■□□□ 1.94
SHKBP1-223ENST00000600552 PPARGC1BQ86YN6 1023 aaKnown RBP27.14■■□□□ 1.94
SHKBP1-223ENST00000600552 PIK3C2BO00750 1634 aa27.12■■□□□ 1.93
SHKBP1-223ENST00000600552 IDI1Q13907 227 aa27.12■■□□□ 1.93
SHKBP1-223ENST00000600552 STRCP1A6NGW2 1772 aa27.12■■□□□ 1.93
SHKBP1-223ENST00000600552 ITGAEP38570 1179 aa27.08■■□□□ 1.93
SHKBP1-223ENST00000600552 ARHGAP23Q9P227 1491 aa27.07■■□□□ 1.92
SHKBP1-223ENST00000600552 LRRC7Q96NW7 1537 aa27.07■■□□□ 1.92
SHKBP1-223ENST00000600552 BCANQ96GW7 911 aa27.07■■□□□ 1.92
SHKBP1-223ENST00000600552 ANKRD50Q9ULJ7 1429 aa27.07■■□□□ 1.92
SHKBP1-223ENST00000600552 ADGRL2O95490 1459 aa27.06■■□□□ 1.92
SHKBP1-223ENST00000600552 SLIT1O75093 1534 aa27.06■■□□□ 1.92
SHKBP1-223ENST00000600552 TMEM2Q9UHN6 1383 aa27.06■■□□□ 1.92
SHKBP1-223ENST00000600552 LMTK2Q8IWU2 1503 aa27.06■■□□□ 1.92
SHKBP1-223ENST00000600552 SOCS7O14512 581 aa27.03■■□□□ 1.92
SHKBP1-223ENST00000600552 EFCAB6Q5THR3 1501 aa27.03■■□□□ 1.92
SHKBP1-223ENST00000600552 SLC26A8Q96RN1 970 aa27.02■■□□□ 1.92
SHKBP1-223ENST00000600552 SYNMO15061 1565 aa27.01■■□□□ 1.92
SHKBP1-223ENST00000600552 CHGAP10645 457 aaKnown RBP26.98■■□□□ 1.91
SHKBP1-223ENST00000600552 SLC52A1Q9NWF4 448 aa26.98■■□□□ 1.91
SHKBP1-223ENST00000600552 NOS1P29475 1434 aa26.98■■□□□ 1.91
SHKBP1-223ENST00000600552 ALKQ9UM73 1620 aa26.97■■□□□ 1.91
SHKBP1-223ENST00000600552 RBM33Q96EV2 1170 aaKnown RBP26.96■■□□□ 1.91
SHKBP1-223ENST00000600552 PPP1R15AO75807 674 aaPredicted RBP26.93■■□□□ 1.9
SHKBP1-223ENST00000600552 ADGRB3O60242 1522 aa26.93■■□□□ 1.9
SHKBP1-223ENST00000600552 PROSER2Q86WR7 435 aaPredicted RBP26.92■■□□□ 1.9
SHKBP1-223ENST00000600552 KDM5AP29375 1690 aaKnown RBP26.9■■□□□ 1.9
SHKBP1-223ENST00000600552 KCNA6P17658 529 aa26.9■■□□□ 1.9
SHKBP1-223ENST00000600552 TET3O43151 1660 aa26.89■■□□□ 1.9
SHKBP1-223ENST00000600552 MED1Q15648 1581 aaPredicted RBP26.89■■□□□ 1.9
SHKBP1-223ENST00000600552 PHF23Q9BUL5 403 aaPredicted RBP26.89■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms