RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 KDM5DQ9BY66 1539 aa19.77■□□□□ 0.76
UPF1-208ENST00000600012 KIF3BO15066 747 aa19.77■□□□□ 0.76
UPF1-208ENST00000600012 DNMT1P26358 1616 aaKnown RBP19.76■□□□□ 0.75
UPF1-208ENST00000600012 ZNF335Q9H4Z2 1342 aaPredicted RBP19.75■□□□□ 0.75
UPF1-208ENST00000600012 PZPP20742 1482 aa19.74■□□□□ 0.75
UPF1-208ENST00000600012 POLR1AO95602 1720 aaPredicted RBP19.73■□□□□ 0.75
UPF1-208ENST00000600012 LRRC9Q6ZRR7 1453 aa19.73■□□□□ 0.75
UPF1-208ENST00000600012 TNRQ92752 1358 aa19.72■□□□□ 0.75
UPF1-208ENST00000600012 DISP3Q9P2K9 1392 aa19.72■□□□□ 0.75
UPF1-208ENST00000600012 TSPY4P0CV99 314 aa19.71■□□□□ 0.75
UPF1-208ENST00000600012 TSPY10P0CW01 314 aa19.71■□□□□ 0.75
UPF1-208ENST00000600012 WASHC2CQ9Y4E1 1318 aa19.7■□□□□ 0.74
UPF1-208ENST00000600012 MAST1Q9Y2H9 1570 aa19.69■□□□□ 0.74
UPF1-208ENST00000600012 MAP3K1Q13233 1512 aa19.68■□□□□ 0.74
UPF1-208ENST00000600012 FBXO31Q5XUX0 539 aaPredicted RBP19.68■□□□□ 0.74
UPF1-208ENST00000600012 SPATA31D1Q6ZQQ2 1576 aa19.68■□□□□ 0.74
UPF1-208ENST00000600012 RNF17Q9BXT8 1623 aaKnown RBP19.67■□□□□ 0.74
UPF1-208ENST00000600012 NEURL4Q96JN8 1562 aa19.66■□□□□ 0.74
UPF1-208ENST00000600012 ZC3H13Q5T200 1668 aaKnown RBP19.66■□□□□ 0.74
UPF1-208ENST00000600012 NLRP1Q9C000 1473 aa19.66■□□□□ 0.74
UPF1-208ENST00000600012 EIF2AK4Q9P2K8 1649 aaKnown RBP19.65■□□□□ 0.74
UPF1-208ENST00000600012 UBAP1LF5GYI3 381 aa19.64■□□□□ 0.73
UPF1-208ENST00000600012 MIA2Q96PC5 1412 aa19.64■□□□□ 0.73
UPF1-208ENST00000600012 UGGT1Q9NYU2 1555 aa19.62■□□□□ 0.73
UPF1-208ENST00000600012 MYOM3Q5VTT5 1437 aa19.62■□□□□ 0.73
UPF1-208ENST00000600012 ABCC3O15438 1527 aa19.61■□□□□ 0.73
UPF1-208ENST00000600012 CPS1P31327 1500 aa19.61■□□□□ 0.73
UPF1-208ENST00000600012 THEMISQ8N1K5 641 aaPredicted RBP19.61■□□□□ 0.73
UPF1-208ENST00000600012 ILDR2Q71H61 639 aa19.6■□□□□ 0.73
UPF1-208ENST00000600012 ANKLE2Q86XL3 938 aa19.6■□□□□ 0.73
UPF1-208ENST00000600012 DEPDC5O75140 1603 aa19.6■□□□□ 0.73
UPF1-208ENST00000600012 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.59■□□□□ 0.73
UPF1-208ENST00000600012 KANK4Q5T7N3 995 aaPredicted RBP19.59■□□□□ 0.73
UPF1-208ENST00000600012 PPARGC1BQ86YN6 1023 aaKnown RBP19.59■□□□□ 0.73
UPF1-208ENST00000600012 SHANK2Q9UPX8 1470 aa19.59■□□□□ 0.73
UPF1-208ENST00000600012 MROH1Q8NDA8 1641 aa19.58■□□□□ 0.73
UPF1-208ENST00000600012 MED14O60244 1454 aa19.57■□□□□ 0.72
UPF1-208ENST00000600012 CEP152O94986 1710 aa19.56■□□□□ 0.72
UPF1-208ENST00000600012 DUOX2Q9NRD8 1548 aa19.56■□□□□ 0.72
UPF1-208ENST00000600012 APLP2Q06481 763 aa19.56■□□□□ 0.72
UPF1-208ENST00000600012 NPHP4O75161 1426 aaPredicted RBP19.56■□□□□ 0.72
UPF1-208ENST00000600012 ERVK-7P63135 1459 aa19.55■□□□□ 0.72
UPF1-208ENST00000600012 VWDEQ8N2E2 1590 aa19.55■□□□□ 0.72
UPF1-208ENST00000600012 IQGAP1P46940 1657 aa19.55■□□□□ 0.72
UPF1-208ENST00000600012 SOCS7O14512 581 aa19.54■□□□□ 0.72
UPF1-208ENST00000600012 CROCC2H7BZ55 1655 aa19.54■□□□□ 0.72
UPF1-208ENST00000600012 CFAP65Q6ZU64 1925 aaKnown RBP19.54■□□□□ 0.72
UPF1-208ENST00000600012 TOM1O60784 492 aa19.51■□□□□ 0.71
UPF1-208ENST00000600012 PTPN23Q9H3S7 1636 aa19.51■□□□□ 0.71
UPF1-208ENST00000600012 PRDM15P57071 1507 aaPredicted RBP19.51■□□□□ 0.71
UPF1-208ENST00000600012 KIF15Q9NS87 1388 aa19.5■□□□□ 0.71
UPF1-208ENST00000600012 UBR1Q8IWV7 1749 aa19.5■□□□□ 0.71
UPF1-208ENST00000600012 ERBINQ96RT1 1412 aa19.5■□□□□ 0.71
UPF1-208ENST00000600012 ABCC5O15440 1437 aa19.48■□□□□ 0.71
UPF1-208ENST00000600012 SCAF1Q9H7N4 1312 aaKnown RBP19.48■□□□□ 0.71
UPF1-208ENST00000600012 ARHGAP31Q2M1Z3 1444 aa19.47■□□□□ 0.71
UPF1-208ENST00000600012 PIP4K2BP78356 416 aa19.45■□□□□ 0.7
UPF1-208ENST00000600012 SYNMO15061 1565 aa19.44■□□□□ 0.7
UPF1-208ENST00000600012 STRCP1A6NGW2 1772 aa19.44■□□□□ 0.7
UPF1-208ENST00000600012 DAPK1P53355 1430 aa19.44■□□□□ 0.7
UPF1-208ENST00000600012 FGD6Q6ZV73 1430 aa19.43■□□□□ 0.7
UPF1-208ENST00000600012 SCAF11Q99590 1463 aaKnown RBP19.43■□□□□ 0.7
UPF1-208ENST00000600012 HSPA1LP34931 641 aa19.43■□□□□ 0.7
UPF1-208ENST00000600012 RRP7BPQ9NSQ0 103 aa19.43■□□□□ 0.7
UPF1-208ENST00000600012 SLIT1O75093 1534 aa19.42■□□□□ 0.7
UPF1-208ENST00000600012 ARHGAP23Q9P227 1491 aa19.41■□□□□ 0.7
UPF1-208ENST00000600012 ALKQ9UM73 1620 aa19.41■□□□□ 0.7
UPF1-208ENST00000600012 KANK1Q14678 1352 aa19.41■□□□□ 0.7
UPF1-208ENST00000600012 LRRC7Q96NW7 1537 aa19.41■□□□□ 0.7
UPF1-208ENST00000600012 MED1Q15648 1581 aaPredicted RBP19.4■□□□□ 0.7
UPF1-208ENST00000600012 PIK3C2BO00750 1634 aa19.39■□□□□ 0.69
UPF1-208ENST00000600012 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.38■□□□□ 0.694e-7■■■□□ 15.6
UPF1-208ENST00000600012 ANKRD30AQ9BXX3 1397 aa19.38■□□□□ 0.69
UPF1-208ENST00000600012 KDM5AP29375 1690 aaKnown RBP19.37■□□□□ 0.69
UPF1-208ENST00000600012 LMTK2Q8IWU2 1503 aa19.37■□□□□ 0.69
UPF1-208ENST00000600012 TXNDC2Q86VQ3 553 aa19.36■□□□□ 0.69
UPF1-208ENST00000600012 LTKP29376 864 aa19.35■□□□□ 0.69
UPF1-208ENST00000600012 EID1Q9Y6B2 187 aa19.35■□□□□ 0.69
UPF1-208ENST00000600012 CHIC2Q9UKJ5 165 aa19.33■□□□□ 0.68
UPF1-208ENST00000600012 TMEM2Q9UHN6 1383 aa19.32■□□□□ 0.68
UPF1-208ENST00000600012 EFCAB6Q5THR3 1501 aa19.32■□□□□ 0.68
UPF1-208ENST00000600012 ADGRL2O95490 1459 aa19.32■□□□□ 0.68
UPF1-208ENST00000600012 XIRP1Q702N8 1843 aaKnown RBP19.31■□□□□ 0.68
UPF1-208ENST00000600012 STAG3Q9UJ98 1225 aa19.31■□□□□ 0.68
UPF1-208ENST00000600012 NOS1P29475 1434 aa19.28■□□□□ 0.68
UPF1-208ENST00000600012 TRIM26Q12899 539 aaPredicted RBP19.28■□□□□ 0.68
UPF1-208ENST00000600012 ADGRB3O60242 1522 aa19.27■□□□□ 0.68
UPF1-208ENST00000600012 IDI1Q13907 227 aa19.27■□□□□ 0.68
UPF1-208ENST00000600012 RPRD2Q5VT52 1461 aaKnown RBP19.24■□□□□ 0.67
UPF1-208ENST00000600012 ANKRD50Q9ULJ7 1429 aa19.24■□□□□ 0.67
UPF1-208ENST00000600012 TET3O43151 1660 aa19.24■□□□□ 0.67
UPF1-208ENST00000600012 FAM50AQ14320 339 aaKnown RBP19.23■□□□□ 0.67
UPF1-208ENST00000600012 PHF23Q9BUL5 403 aaPredicted RBP19.23■□□□□ 0.67
UPF1-208ENST00000600012 SLC52A1Q9NWF4 448 aa19.22■□□□□ 0.67
UPF1-208ENST00000600012 PCGF6Q9BYE7 350 aa19.21■□□□□ 0.67
UPF1-208ENST00000600012 SENP3Q9H4L4 574 aaPredicted RBP19.21■□□□□ 0.67
UPF1-208ENST00000600012 KCNA6P17658 529 aa19.2■□□□□ 0.66
UPF1-208ENST00000600012 GCC2Q8IWJ2 1684 aa19.2■□□□□ 0.66
UPF1-208ENST00000600012 TMEM94Q12767 1356 aa19.19■□□□□ 0.66
UPF1-208ENST00000600012 RRBP1Q9P2E9 1410 aaKnown RBP19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms