RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 CHAF1AQ13111 956 aaPredicted RBP15.53■□□□□ 0.08
LIG1-207ENST00000594759 BBXQ8WY36 941 aaPredicted RBP15.53■□□□□ 0.08
LIG1-207ENST00000594759 ZHX1Q9UKY1 873 aaPredicted RBP15.53■□□□□ 0.08
LIG1-207ENST00000594759 GRPEL1Q9HAV7 217 aa15.53■□□□□ 0.08
LIG1-207ENST00000594759 RALBP1Q15311 655 aa15.51■□□□□ 0.07
LIG1-207ENST00000594759 ESF1Q9H501 851 aaKnown RBP15.51■□□□□ 0.07
LIG1-207ENST00000594759 CCDC18Q5T9S5 1454 aa15.5■□□□□ 0.07
LIG1-207ENST00000594759 PRDM10Q9NQV6 1147 aa15.5■□□□□ 0.07
LIG1-207ENST00000594759 KIAA2012Q0VF49 1180 aa15.5■□□□□ 0.07
LIG1-207ENST00000594759 SKOR2Q2VWA4 1001 aaPredicted RBP15.5■□□□□ 0.07
LIG1-207ENST00000594759 XRCC6P12956 609 aaKnown RBP eCLIP15.49■□□□□ 0.07
LIG1-207ENST00000594759 ERICH3Q5RHP9 1530 aa15.49■□□□□ 0.07
LIG1-207ENST00000594759 CDCA7LQ96GN5 454 aa15.49■□□□□ 0.07
LIG1-207ENST00000594759 MFAP1P55081 439 aaKnown RBP15.49■□□□□ 0.07
LIG1-207ENST00000594759 CALD1Q05682 793 aaKnown RBP15.49■□□□□ 0.07
LIG1-207ENST00000594759 PLCB2Q00722 1185 aa15.49■□□□□ 0.07
LIG1-207ENST00000594759 ZNF771Q7L3S4 317 aaPredicted RBP15.48■□□□□ 0.07
LIG1-207ENST00000594759 CSPP1Q1MSJ5 1256 aa15.48■□□□□ 0.07
LIG1-207ENST00000594759 MAPKBP1O60336 1514 aa15.48■□□□□ 0.07
LIG1-207ENST00000594759 NLRP13Q86W25 1043 aa15.47■□□□□ 0.07
LIG1-207ENST00000594759 MCM4P33991 863 aa15.47■□□□□ 0.07
LIG1-207ENST00000594759 LRRC9Q6ZRR7 1453 aa15.47■□□□□ 0.07
LIG1-207ENST00000594759 TNNT3P45378 269 aaPredicted RBP15.47■□□□□ 0.07
LIG1-207ENST00000594759 DDX49Q9Y6V7 483 aaKnown RBP15.47■□□□□ 0.07
LIG1-207ENST00000594759 NUP155O75694 1391 aa15.47■□□□□ 0.07
LIG1-207ENST00000594759 PANK2Q9BZ23 570 aa15.46■□□□□ 0.07
LIG1-207ENST00000594759 MAPK8IP3Q9UPT6 1336 aa15.46■□□□□ 0.07
LIG1-207ENST00000594759 NASPP49321 788 aaPredicted RBP15.46■□□□□ 0.07
LIG1-207ENST00000594759 ISY1Q9ULR0 285 aaKnown RBP15.46■□□□□ 0.07
LIG1-207ENST00000594759 PNISRQ8TF01 805 aaKnown RBP15.45■□□□□ 0.06
LIG1-207ENST00000594759 MYBBP1AQ9BQG0 1328 aaKnown RBP15.45■□□□□ 0.06
LIG1-207ENST00000594759 UQCRHLA0A096LP55 91 aa15.44■□□□□ 0.06
LIG1-207ENST00000594759 UQCRHP07919 91 aa15.44■□□□□ 0.06
LIG1-207ENST00000594759 NEUROD2Q15784 382 aa15.43■□□□□ 0.06
LIG1-207ENST00000594759 FOXD4L1Q9NU39 408 aa15.43■□□□□ 0.06
LIG1-207ENST00000594759 CCDC173Q0VFZ6 552 aa15.42■□□□□ 0.06
LIG1-207ENST00000594759 UACAQ9BZF9 1416 aa15.42■□□□□ 0.06
LIG1-207ENST00000594759 PDIA4P13667 645 aaKnown RBP15.42■□□□□ 0.06
LIG1-207ENST00000594759 FGD1P98174 961 aa15.42■□□□□ 0.06
LIG1-207ENST00000594759 ZSCAN30Q86W11 494 aa15.41■□□□□ 0.06
LIG1-207ENST00000594759 FGD6Q6ZV73 1430 aa15.41■□□□□ 0.06
LIG1-207ENST00000594759 KIF15Q9NS87 1388 aa15.41■□□□□ 0.06
LIG1-207ENST00000594759 AAMPQ13685 434 aa15.4■□□□□ 0.06
LIG1-207ENST00000594759 PTPRGP23470 1445 aa15.4■□□□□ 0.06
LIG1-207ENST00000594759 GGT6Q6P531 493 aa15.4■□□□□ 0.06
LIG1-207ENST00000594759 GOLGA2Q08379 1002 aa15.4■□□□□ 0.06
LIG1-207ENST00000594759 TPRNQ4KMQ1 711 aa15.4■□□□□ 0.06
LIG1-207ENST00000594759 FTSJ3Q8IY81 847 aaKnown RBP15.39■□□□□ 0.05
LIG1-207ENST00000594759 KNSTRNQ9Y448 316 aa15.39■□□□□ 0.05
LIG1-207ENST00000594759 EFCAB2Q5VUJ9 269 aa15.39■□□□□ 0.05
LIG1-207ENST00000594759 ANKRD30AQ9BXX3 1397 aa15.38■□□□□ 0.05
LIG1-207ENST00000594759 CASKIN1Q8WXD9 1431 aa15.38■□□□□ 0.05
LIG1-207ENST00000594759 PMFBP1Q8TBY8 1022 aa15.38■□□□□ 0.05
LIG1-207ENST00000594759 RWDD1Q9H446 243 aaPredicted RBP15.37■□□□□ 0.05
LIG1-207ENST00000594759 GRIN2BQ13224 1484 aa15.37■□□□□ 0.05
LIG1-207ENST00000594759 DNMBPQ6XZF7 1577 aa15.36■□□□□ 0.05
LIG1-207ENST00000594759 NBPF8Q3BBV2 869 aa15.36■□□□□ 0.05
LIG1-207ENST00000594759 USP47Q96K76 1375 aa15.35■□□□□ 0.05
LIG1-207ENST00000594759 ST20-MTHFSA0A0A6YYL1 179 aa15.35■□□□□ 0.05
LIG1-207ENST00000594759 BCL11BQ9C0K0 894 aaPredicted RBP15.35■□□□□ 0.05
LIG1-207ENST00000594759 ROCK2O75116 1388 aaKnown RBP15.35■□□□□ 0.05
LIG1-207ENST00000594759 MYOM3Q5VTT5 1437 aa15.34■□□□□ 0.05
LIG1-207ENST00000594759 NCOA2Q15596 1464 aa15.34■□□□□ 0.05
LIG1-207ENST00000594759 MAPK8IP2Q13387 824 aaPredicted RBP15.34■□□□□ 0.05
LIG1-207ENST00000594759 MLECQ14165 292 aa15.33■□□□□ 0.05
LIG1-207ENST00000594759 MRC2Q9UBG0 1479 aa15.33■□□□□ 0.04
LIG1-207ENST00000594759 KIF3BO15066 747 aa15.32■□□□□ 0.04
LIG1-207ENST00000594759 ABCA10Q8WWZ4 1543 aa15.32■□□□□ 0.04
LIG1-207ENST00000594759 URB2Q14146 1524 aaKnown RBP15.32■□□□□ 0.04
LIG1-207ENST00000594759 C22orf23Q9BZE7 217 aa15.32■□□□□ 0.04
LIG1-207ENST00000594759 CBX1P83916 185 aa15.31■□□□□ 0.04
LIG1-207ENST00000594759 C20orf194Q5TEA3 1177 aa15.31■□□□□ 0.04
LIG1-207ENST00000594759 SMAP1Q8IYB5 467 aaPredicted RBP15.31■□□□□ 0.04
LIG1-207ENST00000594759 COG6Q9Y2V7 657 aa15.31■□□□□ 0.04
LIG1-207ENST00000594759 CCDC146Q8IYE0 955 aa15.3■□□□□ 0.04
LIG1-207ENST00000594759 CLUAP1Q96AJ1 413 aa15.3■□□□□ 0.04
LIG1-207ENST00000594759 NAP1L2Q9ULW6 460 aaPredicted RBP15.29■□□□□ 0.04
LIG1-207ENST00000594759 CGNL1Q0VF96 1302 aa15.29■□□□□ 0.04
LIG1-207ENST00000594759 PRDM2Q13029 1718 aa15.29■□□□□ 0.04
LIG1-207ENST00000594759 BRD4O60885 1362 aaPredicted RBP15.29■□□□□ 0.04
LIG1-207ENST00000594759 SAFB2Q14151 953 aaKnown RBP eCLIP15.28■□□□□ 0.04
LIG1-207ENST00000594759 TAF3Q5VWG9 929 aa15.28■□□□□ 0.04
LIG1-207ENST00000594759 XPCQ01831 940 aaPredicted RBP15.28■□□□□ 0.04
LIG1-207ENST00000594759 CCDC39Q9UFE4 941 aa15.28■□□□□ 0.04
LIG1-207ENST00000594759 HMGN5P82970 282 aaKnown RBP15.27■□□□□ 0.04
LIG1-207ENST00000594759 FYCO1Q9BQS8 1478 aa15.27■□□□□ 0.04
LIG1-207ENST00000594759 SNAPC4Q5SXM2 1469 aa15.27■□□□□ 0.03
LIG1-207ENST00000594759 SPAG9O60271 1321 aaKnown RBP15.27■□□□□ 0.03
LIG1-207ENST00000594759 CGNQ9P2M7 1197 aaKnown RBP15.27■□□□□ 0.03
LIG1-207ENST00000594759 DYNC1I1O14576 645 aa15.26■□□□□ 0.03
LIG1-207ENST00000594759 CHMP4BQ9H444 224 aaKnown RBP15.26■□□□□ 0.03
LIG1-207ENST00000594759 CCDC66A2RUB6 948 aa15.26■□□□□ 0.03
LIG1-207ENST00000594759 TIAM1Q13009 1591 aa15.26■□□□□ 0.03
LIG1-207ENST00000594759 OFD1O75665 1012 aa15.25■□□□□ 0.03
LIG1-207ENST00000594759 TBC1D2Q9BYX2 928 aa15.25■□□□□ 0.03
LIG1-207ENST00000594759 RNF123Q5XPI4 1314 aa15.25■□□□□ 0.03
LIG1-207ENST00000594759 C8orf34Q49A92 452 aa15.25■□□□□ 0.03
LIG1-207ENST00000594759 SYAP1Q96A49 352 aaPredicted RBP15.25■□□□□ 0.03
LIG1-207ENST00000594759 BIVM-ERCC5R4GMW8 1640 aa15.25■□□□□ 0.03
LIG1-207ENST00000594759 ZNF608Q9ULD9 1512 aaPredicted RBP15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms