RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 ZMYM3Q14202 1370 aa20.08■□□□□ 0.8
VMP1-217ENST00000593168 ATP7AQ04656 1500 aa20.07■□□□□ 0.8
VMP1-217ENST00000593168 MYO3AQ8NEV4 1616 aa20.07■□□□□ 0.8
VMP1-217ENST00000593168 HRCP23327 699 aa20.07■□□□□ 0.8
VMP1-217ENST00000593168 HNRNPMP52272 730 aaKnown RBP eCLIP20.07■□□□□ 0.82e-7■■■■□ 25.4
VMP1-217ENST00000593168 INO80Q9ULG1 1556 aaPredicted RBP20.07■□□□□ 0.8
VMP1-217ENST00000593168 ZNF142P52746 1687 aaPredicted RBP20.07■□□□□ 0.8
VMP1-217ENST00000593168 SPAG9O60271 1321 aaKnown RBP20.06■□□□□ 0.8
VMP1-217ENST00000593168 PLXNC1O60486 1568 aa20.06■□□□□ 0.8
VMP1-217ENST00000593168 MBD5Q9P267 1494 aa20.05■□□□□ 0.8
VMP1-217ENST00000593168 ARHGEF5Q12774 1597 aa20.05■□□□□ 0.8
VMP1-217ENST00000593168 ROCK1Q13464 1354 aa20.05■□□□□ 0.8
VMP1-217ENST00000593168 NCKAP5LQ9HCH0 1330 aa20.04■□□□□ 0.8
VMP1-217ENST00000593168 HFM1A2PYH4 1435 aa20.04■□□□□ 0.8
VMP1-217ENST00000593168 CHIC2Q9UKJ5 165 aa20.02■□□□□ 0.8
VMP1-217ENST00000593168 RAB3GAP2Q9H2M9 1393 aa20.02■□□□□ 0.8
VMP1-217ENST00000593168 A2MP01023 1474 aa20.02■□□□□ 0.8
VMP1-217ENST00000593168 CEP170BQ9Y4F5 1589 aaPredicted RBP20.02■□□□□ 0.8
VMP1-217ENST00000593168 ZNF335Q9H4Z2 1342 aaPredicted RBP20.02■□□□□ 0.79
VMP1-217ENST00000593168 SHANK2Q9UPX8 1470 aa20.01■□□□□ 0.79
VMP1-217ENST00000593168 NAIPQ13075 1403 aa20.01■□□□□ 0.79
VMP1-217ENST00000593168 TSPY4P0CV99 314 aa20■□□□□ 0.79
VMP1-217ENST00000593168 TSPY10P0CW01 314 aa20■□□□□ 0.79
VMP1-217ENST00000593168 CCDC141Q6ZP82 1450 aa19.99■□□□□ 0.79
VMP1-217ENST00000593168 CROCC2H7BZ55 1655 aa19.99■□□□□ 0.79
VMP1-217ENST00000593168 ADGBQ8N7X0 1667 aa19.99■□□□□ 0.79
VMP1-217ENST00000593168 ADGRL2O95490 1459 aa19.99■□□□□ 0.79
VMP1-217ENST00000593168 PLA2R1Q13018 1463 aa19.99■□□□□ 0.79
VMP1-217ENST00000593168 CCER1Q8TC90 406 aaPredicted RBP19.97■□□□□ 0.79
VMP1-217ENST00000593168 RRP7BPQ9NSQ0 103 aa19.97■□□□□ 0.79
VMP1-217ENST00000593168 GGT6Q6P531 493 aa19.96■□□□□ 0.79
VMP1-217ENST00000593168 ANKRD30AQ9BXX3 1397 aa19.95■□□□□ 0.79
VMP1-217ENST00000593168 PKD2Q13563 968 aa19.95■□□□□ 0.78
VMP1-217ENST00000593168 GCC2Q8IWJ2 1684 aa19.94■□□□□ 0.78
VMP1-217ENST00000593168 UBAP1LF5GYI3 381 aa19.94■□□□□ 0.78
VMP1-217ENST00000593168 ACIN1Q9UKV3 1341 aaKnown RBP19.94■□□□□ 0.78
VMP1-217ENST00000593168 MAST1Q9Y2H9 1570 aa19.93■□□□□ 0.78
VMP1-217ENST00000593168 ZEB1P37275 1124 aaPredicted RBP19.9■□□□□ 0.78
VMP1-217ENST00000593168 DHX57Q6P158 1386 aaKnown RBP19.9■□□□□ 0.78
VMP1-217ENST00000593168 A2ML1A8K2U0 1454 aa19.9■□□□□ 0.78
VMP1-217ENST00000593168 POLR1AO95602 1720 aaPredicted RBP19.89■□□□□ 0.77
VMP1-217ENST00000593168 PPP6R1Q9UPN7 881 aa19.88■□□□□ 0.77
VMP1-217ENST00000593168 RTEL1-TNFRSF6BF6WH68 1400 aa19.86■□□□□ 0.77
VMP1-217ENST00000593168 CLSPNQ9HAW4 1339 aa19.86■□□□□ 0.77
VMP1-217ENST00000593168 NEURL4Q96JN8 1562 aa19.86■□□□□ 0.77
VMP1-217ENST00000593168 DHX29Q7Z478 1369 aaKnown RBP19.84■□□□□ 0.77
VMP1-217ENST00000593168 KIF15Q9NS87 1388 aa19.83■□□□□ 0.77
VMP1-217ENST00000593168 ANKRD50Q9ULJ7 1429 aa19.83■□□□□ 0.76
VMP1-217ENST00000593168 FBXO31Q5XUX0 539 aaPredicted RBP19.82■□□□□ 0.76
VMP1-217ENST00000593168 KDM5DQ9BY66 1539 aa19.8■□□□□ 0.76
VMP1-217ENST00000593168 TNRQ92752 1358 aa19.8■□□□□ 0.76
VMP1-217ENST00000593168 PZPP20742 1482 aa19.79■□□□□ 0.76
VMP1-217ENST00000593168 CPS1P31327 1500 aa19.79■□□□□ 0.76
VMP1-217ENST00000593168 KIF3BO15066 747 aa19.78■□□□□ 0.76
VMP1-217ENST00000593168 HSPA1LP34931 641 aa19.78■□□□□ 0.76
VMP1-217ENST00000593168 MED1Q15648 1581 aaPredicted RBP19.78■□□□□ 0.76
VMP1-217ENST00000593168 SCAF1Q9H7N4 1312 aaKnown RBP19.76■□□□□ 0.75
VMP1-217ENST00000593168 FAM135AQ9P2D6 1515 aa19.76■□□□□ 0.75
VMP1-217ENST00000593168 PIP4K2BP78356 416 aa19.76■□□□□ 0.75
VMP1-217ENST00000593168 TRIM52Q96A61 297 aa19.76■□□□□ 0.75
VMP1-217ENST00000593168 DUOX2Q9NRD8 1548 aa19.76■□□□□ 0.75
VMP1-217ENST00000593168 VWDEQ8N2E2 1590 aa19.75■□□□□ 0.75
VMP1-217ENST00000593168 ALKQ9UM73 1620 aa19.73■□□□□ 0.75
VMP1-217ENST00000593168 TOM1O60784 492 aa19.72■□□□□ 0.75
VMP1-217ENST00000593168 ERBINQ96RT1 1412 aa19.72■□□□□ 0.75
VMP1-217ENST00000593168 UGGT1Q9NYU2 1555 aa19.72■□□□□ 0.75
VMP1-217ENST00000593168 DEPDC5O75140 1603 aa19.72■□□□□ 0.75
VMP1-217ENST00000593168 WASHC2CQ9Y4E1 1318 aa19.72■□□□□ 0.75
VMP1-217ENST00000593168 MPHOSPH9Q99550 1183 aa19.71■□□□□ 0.75
VMP1-217ENST00000593168 ANKLE2Q86XL3 938 aa19.7■□□□□ 0.74
VMP1-217ENST00000593168 MED14O60244 1454 aa19.7■□□□□ 0.74
VMP1-217ENST00000593168 NLRP1Q9C000 1473 aa19.7■□□□□ 0.74
VMP1-217ENST00000593168 STRCP1A6NGW2 1772 aa19.7■□□□□ 0.74
VMP1-217ENST00000593168 NPHP4O75161 1426 aaPredicted RBP19.69■□□□□ 0.74
VMP1-217ENST00000593168 IQGAP1P46940 1657 aa19.68■□□□□ 0.74
VMP1-217ENST00000593168 THEMISQ8N1K5 641 aaPredicted RBP19.68■□□□□ 0.74
VMP1-217ENST00000593168 RNF17Q9BXT8 1623 aaKnown RBP19.67■□□□□ 0.74
VMP1-217ENST00000593168 NUP155O75694 1391 aa19.65■□□□□ 0.74
VMP1-217ENST00000593168 ZC3H13Q5T200 1668 aaKnown RBP19.65■□□□□ 0.74
VMP1-217ENST00000593168 SLC4A1APQ9BWU0 796 aaKnown RBP19.64■□□□□ 0.73
VMP1-217ENST00000593168 ABCC3O15438 1527 aa19.64■□□□□ 0.73
VMP1-217ENST00000593168 UNC13BO14795 1591 aa19.63■□□□□ 0.73
VMP1-217ENST00000593168 CEP152O94986 1710 aa19.62■□□□□ 0.73
VMP1-217ENST00000593168 LRRC7Q96NW7 1537 aa19.61■□□□□ 0.73
VMP1-217ENST00000593168 MROH1Q8NDA8 1641 aa19.61■□□□□ 0.73
VMP1-217ENST00000593168 CFAP65Q6ZU64 1925 aaKnown RBP19.61■□□□□ 0.73
VMP1-217ENST00000593168 EIF2AK4Q9P2K8 1649 aaKnown RBP19.6■□□□□ 0.73
VMP1-217ENST00000593168 SYNMO15061 1565 aa19.6■□□□□ 0.73
VMP1-217ENST00000593168 ERVK-7P63135 1459 aa19.6■□□□□ 0.73
VMP1-217ENST00000593168 UBR1Q8IWV7 1749 aa19.59■□□□□ 0.73
VMP1-217ENST00000593168 SENP3Q9H4L4 574 aaPredicted RBP19.57■□□□□ 0.72
VMP1-217ENST00000593168 TIMELESSQ9UNS1 1208 aa19.57■□□□□ 0.72
VMP1-217ENST00000593168 SIN3AQ96ST3 1273 aa19.56■□□□□ 0.72
VMP1-217ENST00000593168 IQGAP3Q86VI3 1631 aa19.55■□□□□ 0.72
VMP1-217ENST00000593168 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.55■□□□□ 0.728e-7■□□□□ 10.1
VMP1-217ENST00000593168 PHF23Q9BUL5 403 aaPredicted RBP19.55■□□□□ 0.72
VMP1-217ENST00000593168 ANKRD30BQ9BXX2 1392 aa19.55■□□□□ 0.72
VMP1-217ENST00000593168 XIRP1Q702N8 1843 aaKnown RBP19.54■□□□□ 0.72
VMP1-217ENST00000593168 KANK1Q14678 1352 aa19.52■□□□□ 0.72
VMP1-217ENST00000593168 NEUROD1Q13562 356 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms