RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 TCOF1Q13428 1488 aaKnown RBP16.93■□□□□ 0.3
LIG3-214ENST00000592244 FAM50AQ14320 339 aaKnown RBP16.92■□□□□ 0.3
LIG3-214ENST00000592244 DAPK1P53355 1430 aa16.92■□□□□ 0.3
LIG3-214ENST00000592244 DUOX2Q9NRD8 1548 aa16.91■□□□□ 0.3
LIG3-214ENST00000592244 ANKRD30AQ9BXX3 1397 aa16.91■□□□□ 0.3
LIG3-214ENST00000592244 RRP7BPQ9NSQ0 103 aa16.91■□□□□ 0.3
LIG3-214ENST00000592244 ILDR1Q86SU0 546 aaPredicted RBP16.89■□□□□ 0.29
LIG3-214ENST00000592244 ERBINQ96RT1 1412 aa16.88■□□□□ 0.29
LIG3-214ENST00000592244 PZPP20742 1482 aa16.88■□□□□ 0.29
LIG3-214ENST00000592244 TNRQ92752 1358 aa16.88■□□□□ 0.29
LIG3-214ENST00000592244 CHIC2Q9UKJ5 165 aa16.87■□□□□ 0.29
LIG3-214ENST00000592244 EIF2AK4Q9P2K8 1649 aaKnown RBP16.87■□□□□ 0.29
LIG3-214ENST00000592244 KANK1Q14678 1352 aa16.87■□□□□ 0.29
LIG3-214ENST00000592244 DNMT1P26358 1616 aaKnown RBP16.86■□□□□ 0.29
LIG3-214ENST00000592244 PKD2Q13563 968 aa16.86■□□□□ 0.29
LIG3-214ENST00000592244 FBXO41Q8TF61 875 aa16.86■□□□□ 0.29
LIG3-214ENST00000592244 PTPRTO14522 1441 aa16.86■□□□□ 0.29
LIG3-214ENST00000592244 NCOA1Q15788 1441 aa16.85■□□□□ 0.29
LIG3-214ENST00000592244 FBXO31Q5XUX0 539 aaPredicted RBP16.84■□□□□ 0.29
LIG3-214ENST00000592244 RNF17Q9BXT8 1623 aaKnown RBP16.84■□□□□ 0.29
LIG3-214ENST00000592244 A2ML1A8K2U0 1454 aa16.83■□□□□ 0.28
LIG3-214ENST00000592244 CROCC2H7BZ55 1655 aa16.82■□□□□ 0.28
LIG3-214ENST00000592244 CEP170BQ9Y4F5 1589 aaPredicted RBP16.82■□□□□ 0.28
LIG3-214ENST00000592244 PLA2R1Q13018 1463 aa16.82■□□□□ 0.28
LIG3-214ENST00000592244 THEMISQ8N1K5 641 aaPredicted RBP16.82■□□□□ 0.28
LIG3-214ENST00000592244 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.82■□□□□ 0.28
LIG3-214ENST00000592244 CAMSAP1Q5T5Y3 1602 aa16.81■□□□□ 0.28
LIG3-214ENST00000592244 MYO3AQ8NEV4 1616 aa16.81■□□□□ 0.28
LIG3-214ENST00000592244 ABCC3O15438 1527 aa16.81■□□□□ 0.28
LIG3-214ENST00000592244 NLRP1Q9C000 1473 aa16.81■□□□□ 0.28
LIG3-214ENST00000592244 CERKQ8TCT0 537 aa16.81■□□□□ 0.28
LIG3-214ENST00000592244 ZC3H13Q5T200 1668 aaKnown RBP16.81■□□□□ 0.28
LIG3-214ENST00000592244 ADGRL2O95490 1459 aa16.79■□□□□ 0.28
LIG3-214ENST00000592244 ZNF142P52746 1687 aaPredicted RBP16.78■□□□□ 0.28
LIG3-214ENST00000592244 NCKAP5LQ9HCH0 1330 aa16.78■□□□□ 0.28
LIG3-214ENST00000592244 STRCQ7RTU9 1775 aa16.77■□□□□ 0.28
LIG3-214ENST00000592244 ANKLE2Q86XL3 938 aa16.77■□□□□ 0.28
LIG3-214ENST00000592244 PRDM15P57071 1507 aaPredicted RBP16.76■□□□□ 0.27
LIG3-214ENST00000592244 ARHGAP31Q2M1Z3 1444 aa16.76■□□□□ 0.27
LIG3-214ENST00000592244 ANKRD50Q9ULJ7 1429 aa16.76■□□□□ 0.27
LIG3-214ENST00000592244 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.76■□□□□ 0.27
LIG3-214ENST00000592244 ERVK-7P63135 1459 aa16.74■□□□□ 0.27
LIG3-214ENST00000592244 PPARGC1BQ86YN6 1023 aaKnown RBP16.74■□□□□ 0.27
LIG3-214ENST00000592244 ROCK1Q13464 1354 aa16.74■□□□□ 0.27
LIG3-214ENST00000592244 MROH1Q8NDA8 1641 aa16.74■□□□□ 0.27
LIG3-214ENST00000592244 SPATA31D1Q6ZQQ2 1576 aa16.72■□□□□ 0.27
LIG3-214ENST00000592244 UGGT1Q9NYU2 1555 aa16.72■□□□□ 0.27
LIG3-214ENST00000592244 ITGAEP38570 1179 aa16.71■□□□□ 0.27
LIG3-214ENST00000592244 STAG3Q9UJ98 1225 aa16.71■□□□□ 0.27
LIG3-214ENST00000592244 DEPDC5O75140 1603 aa16.7■□□□□ 0.26
LIG3-214ENST00000592244 LMTK2Q8IWU2 1503 aa16.7■□□□□ 0.26
LIG3-214ENST00000592244 EID1Q9Y6B2 187 aa16.67■□□□□ 0.26
LIG3-214ENST00000592244 CEP152O94986 1710 aa16.67■□□□□ 0.26
LIG3-214ENST00000592244 SLC52A1Q9NWF4 448 aa16.66■□□□□ 0.26
LIG3-214ENST00000592244 IQSEC2Q5JU85 1478 aa16.65■□□□□ 0.26
LIG3-214ENST00000592244 ZNF335Q9H4Z2 1342 aaPredicted RBP16.65■□□□□ 0.26
LIG3-214ENST00000592244 VWDEQ8N2E2 1590 aa16.64■□□□□ 0.25
LIG3-214ENST00000592244 RPRD2Q5VT52 1461 aaKnown RBP16.64■□□□□ 0.25
LIG3-214ENST00000592244 NPHP4O75161 1426 aaPredicted RBP16.63■□□□□ 0.25
LIG3-214ENST00000592244 RRBP1Q9P2E9 1410 aaKnown RBP16.62■□□□□ 0.25
LIG3-214ENST00000592244 EFCAB6Q5THR3 1501 aa16.62■□□□□ 0.25
LIG3-214ENST00000592244 MED14O60244 1454 aa16.61■□□□□ 0.25
LIG3-214ENST00000592244 LTBP4Q8N2S1 1624 aa16.61■□□□□ 0.25
LIG3-214ENST00000592244 TXNDC2Q86VQ3 553 aa16.61■□□□□ 0.25
LIG3-214ENST00000592244 HDGFP51858 240 aaKnown RBP16.6■□□□□ 0.25
LIG3-214ENST00000592244 IDI1Q13907 227 aa16.6■□□□□ 0.25
LIG3-214ENST00000592244 NUP155O75694 1391 aa16.6■□□□□ 0.25
LIG3-214ENST00000592244 NOS1P29475 1434 aa16.59■□□□□ 0.25
LIG3-214ENST00000592244 SCAF11Q99590 1463 aaKnown RBP16.59■□□□□ 0.25
LIG3-214ENST00000592244 POLR1AO95602 1720 aaPredicted RBP16.59■□□□□ 0.25
LIG3-214ENST00000592244 TMEM2Q9UHN6 1383 aa16.58■□□□□ 0.24
LIG3-214ENST00000592244 NEURL4Q96JN8 1562 aa16.57■□□□□ 0.24
LIG3-214ENST00000592244 CPS1P31327 1500 aa16.57■□□□□ 0.24
LIG3-214ENST00000592244 SLIT1O75093 1534 aa16.56■□□□□ 0.24
LIG3-214ENST00000592244 CFAP65Q6ZU64 1925 aaKnown RBP16.56■□□□□ 0.24
LIG3-214ENST00000592244 UNC13BO14795 1591 aa16.55■□□□□ 0.24
LIG3-214ENST00000592244 ARHGAP23Q9P227 1491 aa16.55■□□□□ 0.24
LIG3-214ENST00000592244 UBAP1LF5GYI3 381 aa16.55■□□□□ 0.24
LIG3-214ENST00000592244 TET3O43151 1660 aa16.55■□□□□ 0.24
LIG3-214ENST00000592244 UBR1Q8IWV7 1749 aa16.54■□□□□ 0.24
LIG3-214ENST00000592244 LTKP29376 864 aa16.54■□□□□ 0.24
LIG3-214ENST00000592244 TOM1O60784 492 aa16.52■□□□□ 0.24
LIG3-214ENST00000592244 BCANQ96GW7 911 aa16.52■□□□□ 0.24
LIG3-214ENST00000592244 KDM5AP29375 1690 aaKnown RBP16.52■□□□□ 0.23
LIG3-214ENST00000592244 IQGAP1P46940 1657 aa16.52■□□□□ 0.23
LIG3-214ENST00000592244 PIK3C2BO00750 1634 aa16.52■□□□□ 0.23
LIG3-214ENST00000592244 SYNMO15061 1565 aa16.51■□□□□ 0.23
LIG3-214ENST00000592244 PPP1R15AO75807 674 aaPredicted RBP16.51■□□□□ 0.23
LIG3-214ENST00000592244 CHGAP10645 457 aaKnown RBP16.51■□□□□ 0.23
LIG3-214ENST00000592244 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.51■□□□□ 0.23
LIG3-214ENST00000592244 ADGRB3O60242 1522 aa16.5■□□□□ 0.23
LIG3-214ENST00000592244 IQGAP3Q86VI3 1631 aa16.5■□□□□ 0.23
LIG3-214ENST00000592244 GCC2Q8IWJ2 1684 aa16.5■□□□□ 0.23
LIG3-214ENST00000592244 NAIPQ13075 1403 aa16.49■□□□□ 0.23
LIG3-214ENST00000592244 HFM1A2PYH4 1435 aa16.48■□□□□ 0.23
LIG3-214ENST00000592244 TRIM52Q96A61 297 aa16.48■□□□□ 0.23
LIG3-214ENST00000592244 ACIN1Q9UKV3 1341 aaKnown RBP16.46■□□□□ 0.23
LIG3-214ENST00000592244 SCAF1Q9H7N4 1312 aaKnown RBP16.45■□□□□ 0.22
LIG3-214ENST00000592244 RIMS2Q9UQ26 1411 aa16.44■□□□□ 0.22
LIG3-214ENST00000592244 KCNA6P17658 529 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms