RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 L3MBTL2Q969R5 705 aa28.43■■■□□ 2.14
TRIM47-204ENST00000587339 HECW2Q9P2P5 1572 aa28.42■■■□□ 2.14
TRIM47-204ENST00000587339 RAPGEF3O95398 923 aa28.41■■■□□ 2.14
TRIM47-204ENST00000587339 EIF2AK4Q9P2K8 1649 aaKnown RBP28.39■■■□□ 2.14
TRIM47-204ENST00000587339 TEX14Q8IWB6 1497 aa28.39■■■□□ 2.13
TRIM47-204ENST00000587339 KIF3BO15066 747 aa28.37■■■□□ 2.13
TRIM47-204ENST00000587339 DEPDC5O75140 1603 aa28.37■■■□□ 2.13
TRIM47-204ENST00000587339 A2MP01023 1474 aa28.36■■■□□ 2.13
TRIM47-204ENST00000587339 RICTORQ6R327 1708 aa28.34■■■□□ 2.13
TRIM47-204ENST00000587339 KANK1Q14678 1352 aa28.33■■■□□ 2.12
TRIM47-204ENST00000587339 TSPOAP1O95153 1857 aa28.32■■■□□ 2.12
TRIM47-204ENST00000587339 PPRC1Q5VV67 1664 aaKnown RBP28.31■■■□□ 2.12
TRIM47-204ENST00000587339 ABCA6Q8N139 1617 aa28.29■■■□□ 2.12
TRIM47-204ENST00000587339 PRDM15P57071 1507 aaPredicted RBP28.29■■■□□ 2.12
TRIM47-204ENST00000587339 CCDC144AA2RUR9 1427 aa28.28■■■□□ 2.12
TRIM47-204ENST00000587339 KIF13AQ9H1H9 1805 aa28.27■■■□□ 2.12
TRIM47-204ENST00000587339 VWDEQ8N2E2 1590 aa28.27■■■□□ 2.12
TRIM47-204ENST00000587339 FRMPD1Q5SYB0 1578 aa28.26■■■□□ 2.11
TRIM47-204ENST00000587339 PLA2R1Q13018 1463 aa28.26■■■□□ 2.11
TRIM47-204ENST00000587339 MROH1Q8NDA8 1641 aa28.25■■■□□ 2.11
TRIM47-204ENST00000587339 ATP10AO60312 1499 aa28.25■■■□□ 2.11
TRIM47-204ENST00000587339 DIP2CQ9Y2E4 1556 aa28.22■■■□□ 2.11
TRIM47-204ENST00000587339 TET3O43151 1660 aa28.22■■■□□ 2.11
TRIM47-204ENST00000587339 E9PCH4 1651 aa28.21■■■□□ 2.11
TRIM47-204ENST00000587339 RNF17Q9BXT8 1623 aaKnown RBP28.21■■■□□ 2.11
TRIM47-204ENST00000587339 ZMYM4Q5VZL5 1548 aa28.2■■■□□ 2.1
TRIM47-204ENST00000587339 NBPF8Q3BBV2 869 aa28.19■■■□□ 2.1
TRIM47-204ENST00000587339 YEATS2Q9ULM3 1422 aa28.18■■■□□ 2.1
TRIM47-204ENST00000587339 BCORL1Q5H9F3 1711 aa28.17■■■□□ 2.1
TRIM47-204ENST00000587339 GGT6Q6P531 493 aa28.15■■■□□ 2.1
TRIM47-204ENST00000587339 HIRIP3Q9BW71 556 aaPredicted RBP28.14■■■□□ 2.09
TRIM47-204ENST00000587339 LMTK2Q8IWU2 1503 aa28.13■■■□□ 2.09
TRIM47-204ENST00000587339 PTPRTO14522 1441 aa28.12■■■□□ 2.09
TRIM47-204ENST00000587339 TRPM2O94759 1503 aa28.11■■■□□ 2.09
TRIM47-204ENST00000587339 EFCAB6Q5THR3 1501 aa28.1■■■□□ 2.09
TRIM47-204ENST00000587339 DCAF11Q8TEB1 546 aa28.1■■■□□ 2.09
TRIM47-204ENST00000587339 SPHKAPQ2M3C7 1700 aa28.1■■■□□ 2.09
TRIM47-204ENST00000587339 ZNF326Q5BKZ1 582 aaKnown RBP28.1■■■□□ 2.09
TRIM47-204ENST00000587339 UHRF1BP1Q6BDS2 1440 aa28.09■■■□□ 2.09
TRIM47-204ENST00000587339 EIF4G2P78344 907 aaKnown RBP eCLIP28.08■■■□□ 2.09
TRIM47-204ENST00000587339 RGL3Q3MIN7 710 aa28.08■■■□□ 2.09
TRIM47-204ENST00000587339 CEP152O94986 1710 aa28.07■■■□□ 2.08
TRIM47-204ENST00000587339 KDM2AQ9Y2K7 1162 aa28.07■■■□□ 2.08
TRIM47-204ENST00000587339 WASHC2CQ9Y4E1 1318 aa28.06■■■□□ 2.08
TRIM47-204ENST00000587339 HSPA5P11021 654 aaKnown RBP28.04■■■□□ 2.08
TRIM47-204ENST00000587339 COL17A1Q9UMD9 1497 aaPredicted RBP28.04■■■□□ 2.08
TRIM47-204ENST00000587339 ABCC3O15438 1527 aa28.01■■■□□ 2.08
TRIM47-204ENST00000587339 SPATA31E1Q6ZUB1 1445 aa28■■■□□ 2.07
TRIM47-204ENST00000587339 CLTCL1P53675 1640 aa28■■■□□ 2.07
TRIM47-204ENST00000587339 NPATQ14207 1427 aa27.98■■■□□ 2.07
TRIM47-204ENST00000587339 RALGAPBQ86X10 1494 aa27.98■■■□□ 2.07
TRIM47-204ENST00000587339 REREQ9P2R6 1566 aa27.98■■■□□ 2.07
TRIM47-204ENST00000587339 MIER1Q8N108 512 aa27.96■■■□□ 2.07
TRIM47-204ENST00000587339 PRAG1Q86YV5 1406 aa27.94■■■□□ 2.06
TRIM47-204ENST00000587339 CAMSAP1Q5T5Y3 1602 aa27.94■■■□□ 2.06
TRIM47-204ENST00000587339 ZC3H13Q5T200 1668 aaKnown RBP27.94■■■□□ 2.06
TRIM47-204ENST00000587339 DDX10Q13206 875 aaKnown RBP27.93■■■□□ 2.06
TRIM47-204ENST00000587339 AGLP35573 1532 aa27.92■■■□□ 2.06
TRIM47-204ENST00000587339 ARHGEF40Q8TER5 1519 aa27.91■■■□□ 2.06
TRIM47-204ENST00000587339 UGGT1Q9NYU2 1555 aa27.9■■■□□ 2.06
TRIM47-204ENST00000587339 CARD11Q9BXL7 1154 aa27.89■■■□□ 2.06
TRIM47-204ENST00000587339 CNTLNQ9NXG0 1405 aa27.89■■■□□ 2.06
TRIM47-204ENST00000587339 NEURL4Q96JN8 1562 aa27.89■■■□□ 2.05
TRIM47-204ENST00000587339 USP47Q96K76 1375 aa27.88■■■□□ 2.05
TRIM47-204ENST00000587339 TRHP20396 242 aaPredicted RBP27.88■■■□□ 2.05
TRIM47-204ENST00000587339 ARHGAP31Q2M1Z3 1444 aa27.88■■■□□ 2.05
TRIM47-204ENST00000587339 DNAJC5Q9H3Z4 198 aa27.87■■■□□ 2.05
TRIM47-204ENST00000587339 ROCK2O75116 1388 aaKnown RBP27.86■■■□□ 2.05
TRIM47-204ENST00000587339 STAC3Q96MF2 364 aa27.86■■■□□ 2.05
TRIM47-204ENST00000587339 TRPM1Q7Z4N2 1603 aa27.85■■■□□ 2.05
TRIM47-204ENST00000587339 PPP6R1Q9UPN7 881 aa27.83■■■□□ 2.05
TRIM47-204ENST00000587339 NOS1P29475 1434 aa27.83■■■□□ 2.05
TRIM47-204ENST00000587339 KIF1BO60333 1816 aa27.83■■■□□ 2.05
TRIM47-204ENST00000587339 WASHC2AQ641Q2 1341 aa27.83■■■□□ 2.05
TRIM47-204ENST00000587339 CFAP65Q6ZU64 1925 aaKnown RBP27.81■■■□□ 2.04
TRIM47-204ENST00000587339 SIGLEC1Q9BZZ2 1709 aa27.8■■■□□ 2.04
TRIM47-204ENST00000587339 GPRASP1Q5JY77 1395 aa27.77■■■□□ 2.04
TRIM47-204ENST00000587339 NBPF1Q3BBV0 1214 aa27.77■■■□□ 2.04
TRIM47-204ENST00000587339 MADDQ8WXG6 1647 aa27.76■■■□□ 2.03
TRIM47-204ENST00000587339 ADGRB3O60242 1522 aa27.76■■■□□ 2.03
TRIM47-204ENST00000587339 C11orf95C9JLR9 678 aaPredicted RBP27.76■■■□□ 2.03
TRIM47-204ENST00000587339 CHGAP10645 457 aaKnown RBP27.75■■■□□ 2.03
TRIM47-204ENST00000587339 MLECQ14165 292 aa27.75■■■□□ 2.03
TRIM47-204ENST00000587339 CCDC7Q96M83 1385 aa27.74■■■□□ 2.03
TRIM47-204ENST00000587339 SYNMO15061 1565 aa27.74■■■□□ 2.03
TRIM47-204ENST00000587339 MROH2AA6NES4 1674 aa27.74■■■□□ 2.03
TRIM47-204ENST00000587339 PIK3C2BO00750 1634 aa27.72■■■□□ 2.03
TRIM47-204ENST00000587339 LAMC1P11047 1609 aa27.72■■■□□ 2.03
TRIM47-204ENST00000587339 MYOM2P54296 1465 aa27.71■■■□□ 2.03
TRIM47-204ENST00000587339 ST20-MTHFSA0A0A6YYL1 179 aa27.7■■■□□ 2.02
TRIM47-204ENST00000587339 PREX1Q8TCU6 1659 aa27.7■■■□□ 2.02
TRIM47-204ENST00000587339 SLC52A1Q9NWF4 448 aa27.7■■■□□ 2.02
TRIM47-204ENST00000587339 KIF7Q2M1P5 1343 aa27.69■■■□□ 2.02
TRIM47-204ENST00000587339 POLR1AO95602 1720 aaPredicted RBP27.69■■■□□ 2.02
TRIM47-204ENST00000587339 CLTCQ00610 1675 aaKnown RBP27.69■■■□□ 2.02
TRIM47-204ENST00000587339 IFT172Q9UG01 1749 aa27.67■■■□□ 2.02
TRIM47-204ENST00000587339 ARID4BQ4LE39 1312 aaPredicted RBP27.67■■■□□ 2.02
TRIM47-204ENST00000587339 IDI1Q13907 227 aa27.66■■■□□ 2.02
TRIM47-204ENST00000587339 ESF1Q9H501 851 aaKnown RBP27.65■■■□□ 2.02
TRIM47-204ENST00000587339 FBXO31Q5XUX0 539 aaPredicted RBP27.65■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms