RNA–Protein interactions for RNA: ENST00000587259.5

VMP1-204, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 606 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-204ENST00000587259 MYO3AQ8NEV4 1616 aa12.46□□□□□ -0.41
VMP1-204ENST00000587259 PLXNC1O60486 1568 aa12.46□□□□□ -0.42
VMP1-204ENST00000587259 MTUS2Q5JR59 1369 aa12.44□□□□□ -0.42
VMP1-204ENST00000587259 UBAP1LF5GYI3 381 aa12.44□□□□□ -0.42
VMP1-204ENST00000587259 KIAA1107Q9UPP5 1409 aa12.44□□□□□ -0.42
VMP1-204ENST00000587259 TIAM1Q13009 1591 aa12.43□□□□□ -0.42
VMP1-204ENST00000587259 CEP170BQ9Y4F5 1589 aaPredicted RBP12.43□□□□□ -0.42
VMP1-204ENST00000587259 SLC4A2P04920 1241 aa12.43□□□□□ -0.42
VMP1-204ENST00000587259 FBXO31Q5XUX0 539 aaPredicted RBP12.43□□□□□ -0.42
VMP1-204ENST00000587259 ZNF142P52746 1687 aaPredicted RBP12.42□□□□□ -0.42
VMP1-204ENST00000587259 MBD5Q9P267 1494 aa12.41□□□□□ -0.42
VMP1-204ENST00000587259 TCOF1Q13428 1488 aaKnown RBP12.4□□□□□ -0.42
VMP1-204ENST00000587259 PLEKHH2Q8IVE3 1493 aa12.4□□□□□ -0.42
VMP1-204ENST00000587259 IQSEC2Q5JU85 1478 aa12.4□□□□□ -0.43
VMP1-204ENST00000587259 KIF3BO15066 747 aa12.39□□□□□ -0.43
VMP1-204ENST00000587259 PKD2Q13563 968 aa12.39□□□□□ -0.43
VMP1-204ENST00000587259 PLA2R1Q13018 1463 aa12.39□□□□□ -0.43
VMP1-204ENST00000587259 PIP4K2BP78356 416 aa12.38□□□□□ -0.43
VMP1-204ENST00000587259 ADGBQ8N7X0 1667 aa12.38□□□□□ -0.43
VMP1-204ENST00000587259 DNMT1P26358 1616 aaKnown RBP12.37□□□□□ -0.43
VMP1-204ENST00000587259 A2ML1A8K2U0 1454 aa12.37□□□□□ -0.43
VMP1-204ENST00000587259 DHX29Q7Z478 1369 aaKnown RBP12.36□□□□□ -0.43
VMP1-204ENST00000587259 EHBP1L1Q8N3D4 1523 aa12.36□□□□□ -0.43
VMP1-204ENST00000587259 TNRQ92752 1358 aa12.35□□□□□ -0.43
VMP1-204ENST00000587259 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.35□□□□□ -0.43
VMP1-204ENST00000587259 HSPA1LP34931 641 aa12.35□□□□□ -0.43
VMP1-204ENST00000587259 CEP162Q5TB80 1403 aa12.35□□□□□ -0.43
VMP1-204ENST00000587259 NEURL4Q96JN8 1562 aa12.35□□□□□ -0.43
VMP1-204ENST00000587259 CAMSAP2Q08AD1 1489 aa12.34□□□□□ -0.43
VMP1-204ENST00000587259 NCOA2Q15596 1464 aa12.34□□□□□ -0.43
VMP1-204ENST00000587259 RTEL1-TNFRSF6BF6WH68 1400 aa12.33□□□□□ -0.44
VMP1-204ENST00000587259 WASHC2CQ9Y4E1 1318 aa12.33□□□□□ -0.44
VMP1-204ENST00000587259 CCDC141Q6ZP82 1450 aa12.33□□□□□ -0.44
VMP1-204ENST00000587259 SPINK5Q9NQ38 1064 aaPredicted RBP12.32□□□□□ -0.44
VMP1-204ENST00000587259 KDM5DQ9BY66 1539 aa12.32□□□□□ -0.44
VMP1-204ENST00000587259 PZPP20742 1482 aa12.31□□□□□ -0.44
VMP1-204ENST00000587259 SHANK2Q9UPX8 1470 aa12.3□□□□□ -0.44
VMP1-204ENST00000587259 POLR1AO95602 1720 aaPredicted RBP12.3□□□□□ -0.44
VMP1-204ENST00000587259 MIA2Q96PC5 1412 aa12.28□□□□□ -0.44
VMP1-204ENST00000587259 VWDEQ8N2E2 1590 aa12.28□□□□□ -0.44
VMP1-204ENST00000587259 CAPN15O75808 1086 aa12.28□□□□□ -0.44
VMP1-204ENST00000587259 ANKLE2Q86XL3 938 aa12.28□□□□□ -0.44
VMP1-204ENST00000587259 ALKQ9UM73 1620 aa12.28□□□□□ -0.44
VMP1-204ENST00000587259 MED1Q15648 1581 aaPredicted RBP12.27□□□□□ -0.44
VMP1-204ENST00000587259 UGGT1Q9NYU2 1555 aa12.27□□□□□ -0.44
VMP1-204ENST00000587259 LOC105371045A0A1W2PR82 267 aa12.27□□□□□ -0.45
VMP1-204ENST00000587259 NPHP4O75161 1426 aaPredicted RBP12.27□□□□□ -0.45
VMP1-204ENST00000587259 TOM1O60784 492 aa12.26□□□□□ -0.45
VMP1-204ENST00000587259 KANK4Q5T7N3 995 aaPredicted RBP12.26□□□□□ -0.45
VMP1-204ENST00000587259 CPS1P31327 1500 aa12.26□□□□□ -0.45
VMP1-204ENST00000587259 THEMISQ8N1K5 641 aaPredicted RBP12.25□□□□□ -0.45
VMP1-204ENST00000587259 STRCP1A6NGW2 1772 aa12.24□□□□□ -0.45
VMP1-204ENST00000587259 ABCC3O15438 1527 aa12.24□□□□□ -0.45
VMP1-204ENST00000587259 TSPY4P0CV99 314 aa12.24□□□□□ -0.45
VMP1-204ENST00000587259 TSPY10P0CW01 314 aa12.24□□□□□ -0.45
VMP1-204ENST00000587259 FAM135AQ9P2D6 1515 aa12.24□□□□□ -0.45
VMP1-204ENST00000587259 ARHGEF5Q12774 1597 aa12.23□□□□□ -0.45
VMP1-204ENST00000587259 NLRP1Q9C000 1473 aa12.23□□□□□ -0.45
VMP1-204ENST00000587259 IQGAP1P46940 1657 aa12.22□□□□□ -0.45
VMP1-204ENST00000587259 MROH1Q8NDA8 1641 aa12.22□□□□□ -0.45
VMP1-204ENST00000587259 MED14O60244 1454 aa12.21□□□□□ -0.45
VMP1-204ENST00000587259 ERVK-7P63135 1459 aa12.21□□□□□ -0.45
VMP1-204ENST00000587259 LRRC9Q6ZRR7 1453 aa12.21□□□□□ -0.45
VMP1-204ENST00000587259 CFAP65Q6ZU64 1925 aaKnown RBP12.21□□□□□ -0.45
VMP1-204ENST00000587259 RSPH4AQ5TD94 716 aa12.21□□□□□ -0.45
VMP1-204ENST00000587259 LRRC7Q96NW7 1537 aa12.21□□□□□ -0.46
VMP1-204ENST00000587259 CEP152O94986 1710 aa12.2□□□□□ -0.46
VMP1-204ENST00000587259 DEPDC5O75140 1603 aa12.2□□□□□ -0.46
VMP1-204ENST00000587259 RNF17Q9BXT8 1623 aaKnown RBP12.2□□□□□ -0.46
VMP1-204ENST00000587259 LTKP29376 864 aa12.2□□□□□ -0.46
VMP1-204ENST00000587259 VPS8Q8N3P4 1428 aa12.19□□□□□ -0.46
VMP1-204ENST00000587259 RRP7BPQ9NSQ0 103 aa12.18□□□□□ -0.46
VMP1-204ENST00000587259 MAST1Q9Y2H9 1570 aa12.18□□□□□ -0.46
VMP1-204ENST00000587259 RBM33Q96EV2 1170 aaKnown RBP12.17□□□□□ -0.46
VMP1-204ENST00000587259 SLC4A1APQ9BWU0 796 aaKnown RBP12.16□□□□□ -0.46
VMP1-204ENST00000587259 MYOM3Q5VTT5 1437 aa12.16□□□□□ -0.46
VMP1-204ENST00000587259 UBR1Q8IWV7 1749 aa12.16□□□□□ -0.46
VMP1-204ENST00000587259 ZC3H13Q5T200 1668 aaKnown RBP12.16□□□□□ -0.46
VMP1-204ENST00000587259 SCAF11Q99590 1463 aaKnown RBP12.15□□□□□ -0.46
VMP1-204ENST00000587259 DSG3P32926 999 aa12.15□□□□□ -0.46
VMP1-204ENST00000587259 TXNDC2Q86VQ3 553 aa12.15□□□□□ -0.46
VMP1-204ENST00000587259 KIF15Q9NS87 1388 aa12.14□□□□□ -0.47
VMP1-204ENST00000587259 EIF2AK4Q9P2K8 1649 aaKnown RBP12.14□□□□□ -0.47
VMP1-204ENST00000587259 ABCC5O15440 1437 aa12.13□□□□□ -0.47
VMP1-204ENST00000587259 RGS17Q9UGC6 210 aaPredicted RBP12.13□□□□□ -0.47
VMP1-204ENST00000587259 CHIC2Q9UKJ5 165 aa12.13□□□□□ -0.47
VMP1-204ENST00000587259 DUOX2Q9NRD8 1548 aa12.12□□□□□ -0.47
VMP1-204ENST00000587259 PIK3C2BO00750 1634 aa12.11□□□□□ -0.47
VMP1-204ENST00000587259 XIRP1Q702N8 1843 aaKnown RBP12.11□□□□□ -0.47
VMP1-204ENST00000587259 SYNMO15061 1565 aa12.11□□□□□ -0.47
VMP1-204ENST00000587259 ARHGAP23Q9P227 1491 aa12.11□□□□□ -0.47
VMP1-204ENST00000587259 SLC26A8Q96RN1 970 aa12.1□□□□□ -0.47
VMP1-204ENST00000587259 SLIT1O75093 1534 aa12.1□□□□□ -0.47
VMP1-204ENST00000587259 PRDM15P57071 1507 aaPredicted RBP12.1□□□□□ -0.47
VMP1-204ENST00000587259 STAG3Q9UJ98 1225 aa12.09□□□□□ -0.47
VMP1-204ENST00000587259 CROCC2H7BZ55 1655 aa12.09□□□□□ -0.47
VMP1-204ENST00000587259 PTPN23Q9H3S7 1636 aa12.08□□□□□ -0.48
VMP1-204ENST00000587259 TMEM2Q9UHN6 1383 aa12.08□□□□□ -0.48
VMP1-204ENST00000587259 IDI1Q13907 227 aa12.08□□□□□ -0.48
VMP1-204ENST00000587259 EID1Q9Y6B2 187 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms