RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 SHANK2Q9UPX8 1470 aa16.59■□□□□ 0.25
CLIP3-203ENST00000586457 DUOX2Q9NRD8 1548 aa16.59■□□□□ 0.25
CLIP3-203ENST00000586457 DNMT1P26358 1616 aaKnown RBP16.58■□□□□ 0.24
CLIP3-203ENST00000586457 SETD1BQ9UPS6 1966 aaKnown RBP16.58■□□□□ 0.24
CLIP3-203ENST00000586457 MROH2AA6NES4 1674 aa16.57■□□□□ 0.24
CLIP3-203ENST00000586457 PREX1Q8TCU6 1659 aa16.57■□□□□ 0.24
CLIP3-203ENST00000586457 KANK1Q14678 1352 aa16.57■□□□□ 0.24
CLIP3-203ENST00000586457 DMRT2Q9Y5R5 561 aa16.57■□□□□ 0.24
CLIP3-203ENST00000586457 NPATQ14207 1427 aa16.55■□□□□ 0.24
CLIP3-203ENST00000586457 CROCC2H7BZ55 1655 aa16.54■□□□□ 0.24
CLIP3-203ENST00000586457 KDM5DQ9BY66 1539 aa16.54■□□□□ 0.24
CLIP3-203ENST00000586457 ERBINQ96RT1 1412 aa16.53■□□□□ 0.24
CLIP3-203ENST00000586457 NCOA1Q15788 1441 aa16.52■□□□□ 0.23
CLIP3-203ENST00000586457 EIF2AK4Q9P2K8 1649 aaKnown RBP16.52■□□□□ 0.23
CLIP3-203ENST00000586457 FAM135AQ9P2D6 1515 aa16.51■□□□□ 0.23
CLIP3-203ENST00000586457 FBXO31Q5XUX0 539 aaPredicted RBP16.51■□□□□ 0.23
CLIP3-203ENST00000586457 PTPRKQ15262 1439 aa16.5■□□□□ 0.23
CLIP3-203ENST00000586457 TNRQ92752 1358 aa16.49■□□□□ 0.23
CLIP3-203ENST00000586457 RNF17Q9BXT8 1623 aaKnown RBP16.47■□□□□ 0.23
CLIP3-203ENST00000586457 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.47■□□□□ 0.23
CLIP3-203ENST00000586457 PZPP20742 1482 aa16.47■□□□□ 0.23
CLIP3-203ENST00000586457 ANKRD50Q9ULJ7 1429 aa16.46■□□□□ 0.23
CLIP3-203ENST00000586457 ADGRL2O95490 1459 aa16.46■□□□□ 0.23
CLIP3-203ENST00000586457 THEMISQ8N1K5 641 aaPredicted RBP16.45■□□□□ 0.22
CLIP3-203ENST00000586457 ZC3H13Q5T200 1668 aaKnown RBP16.44■□□□□ 0.22
CLIP3-203ENST00000586457 STAG3Q9UJ98 1225 aa16.44■□□□□ 0.22
CLIP3-203ENST00000586457 ABCC3O15438 1527 aa16.44■□□□□ 0.22
CLIP3-203ENST00000586457 ROCK1Q13464 1354 aa16.43■□□□□ 0.22
CLIP3-203ENST00000586457 PKD2Q13563 968 aa16.42■□□□□ 0.22
CLIP3-203ENST00000586457 NCKAP5LQ9HCH0 1330 aa16.41■□□□□ 0.22
CLIP3-203ENST00000586457 MYO3AQ8NEV4 1616 aa16.41■□□□□ 0.22
CLIP3-203ENST00000586457 CEP170BQ9Y4F5 1589 aaPredicted RBP16.4■□□□□ 0.22
CLIP3-203ENST00000586457 CAMSAP1Q5T5Y3 1602 aa16.4■□□□□ 0.22
CLIP3-203ENST00000586457 A2ML1A8K2U0 1454 aa16.4■□□□□ 0.22
CLIP3-203ENST00000586457 ANKLE2Q86XL3 938 aa16.39■□□□□ 0.21
CLIP3-203ENST00000586457 NLRP1Q9C000 1473 aa16.39■□□□□ 0.21
CLIP3-203ENST00000586457 PRDM15P57071 1507 aaPredicted RBP16.39■□□□□ 0.21
CLIP3-203ENST00000586457 CEP152O94986 1710 aa16.39■□□□□ 0.21
CLIP3-203ENST00000586457 RRBP1Q9P2E9 1410 aaKnown RBP16.38■□□□□ 0.21
CLIP3-203ENST00000586457 MROH1Q8NDA8 1641 aa16.37■□□□□ 0.21
CLIP3-203ENST00000586457 CFAP65Q6ZU64 1925 aaKnown RBP16.37■□□□□ 0.21
CLIP3-203ENST00000586457 ARHGAP31Q2M1Z3 1444 aa16.36■□□□□ 0.21
CLIP3-203ENST00000586457 ERVK-7P63135 1459 aa16.35■□□□□ 0.21
CLIP3-203ENST00000586457 DEPDC5O75140 1603 aa16.35■□□□□ 0.21
CLIP3-203ENST00000586457 NUP155O75694 1391 aa16.35■□□□□ 0.21
CLIP3-203ENST00000586457 PTPRTO14522 1441 aa16.35■□□□□ 0.21
CLIP3-203ENST00000586457 UGGT1Q9NYU2 1555 aa16.34■□□□□ 0.21
CLIP3-203ENST00000586457 ZNF142P52746 1687 aaPredicted RBP16.34■□□□□ 0.21
CLIP3-203ENST00000586457 EID1Q9Y6B2 187 aa16.34■□□□□ 0.21
CLIP3-203ENST00000586457 STRCQ7RTU9 1775 aa16.33■□□□□ 0.21
CLIP3-203ENST00000586457 TRIM52Q96A61 297 aa16.33■□□□□ 0.2
CLIP3-203ENST00000586457 PLA2R1Q13018 1463 aa16.33■□□□□ 0.2
CLIP3-203ENST00000586457 SPATA31D1Q6ZQQ2 1576 aa16.32■□□□□ 0.2
CLIP3-203ENST00000586457 CERKQ8TCT0 537 aa16.32■□□□□ 0.2
CLIP3-203ENST00000586457 SLC52A1Q9NWF4 448 aa16.32■□□□□ 0.2
CLIP3-203ENST00000586457 LMTK2Q8IWU2 1503 aa16.31■□□□□ 0.2
CLIP3-203ENST00000586457 ILDR1Q86SU0 546 aaPredicted RBP16.3■□□□□ 0.2
CLIP3-203ENST00000586457 CHGAP10645 457 aaKnown RBP16.29■□□□□ 0.2
CLIP3-203ENST00000586457 HDGFP51858 240 aaKnown RBP16.29■□□□□ 0.2
CLIP3-203ENST00000586457 IDI1Q13907 227 aa16.28■□□□□ 0.2
CLIP3-203ENST00000586457 TXNDC2Q86VQ3 553 aa16.28■□□□□ 0.2
CLIP3-203ENST00000586457 FBXO41Q8TF61 875 aa16.28■□□□□ 0.2
CLIP3-203ENST00000586457 BCANQ96GW7 911 aa16.28■□□□□ 0.2
CLIP3-203ENST00000586457 VWDEQ8N2E2 1590 aa16.27■□□□□ 0.2
CLIP3-203ENST00000586457 EFCAB6Q5THR3 1501 aa16.27■□□□□ 0.2
CLIP3-203ENST00000586457 RPRD2Q5VT52 1461 aaKnown RBP16.27■□□□□ 0.19
CLIP3-203ENST00000586457 UNC13BO14795 1591 aa16.26■□□□□ 0.19
CLIP3-203ENST00000586457 TET3O43151 1660 aa16.24■□□□□ 0.19
CLIP3-203ENST00000586457 NAIPQ13075 1403 aa16.24■□□□□ 0.19
CLIP3-203ENST00000586457 PPP1R15AO75807 674 aaPredicted RBP16.23■□□□□ 0.19
CLIP3-203ENST00000586457 ZNF335Q9H4Z2 1342 aaPredicted RBP16.22■□□□□ 0.19
CLIP3-203ENST00000586457 NPHP4O75161 1426 aaPredicted RBP16.22■□□□□ 0.19
CLIP3-203ENST00000586457 ACIN1Q9UKV3 1341 aaKnown RBP16.21■□□□□ 0.19
CLIP3-203ENST00000586457 GCC2Q8IWJ2 1684 aa16.21■□□□□ 0.19
CLIP3-203ENST00000586457 HFM1A2PYH4 1435 aa16.21■□□□□ 0.19
CLIP3-203ENST00000586457 NOS1P29475 1434 aa16.21■□□□□ 0.19
CLIP3-203ENST00000586457 IQGAP3Q86VI3 1631 aa16.21■□□□□ 0.19
CLIP3-203ENST00000586457 SLC4A1APQ9BWU0 796 aaKnown RBP16.21■□□□□ 0.19
CLIP3-203ENST00000586457 POLR1AO95602 1720 aaPredicted RBP16.21■□□□□ 0.19
CLIP3-203ENST00000586457 UBR1Q8IWV7 1749 aa16.2■□□□□ 0.18
CLIP3-203ENST00000586457 PIK3C2BO00750 1634 aa16.19■□□□□ 0.18
CLIP3-203ENST00000586457 SCAF11Q99590 1463 aaKnown RBP16.19■□□□□ 0.18
CLIP3-203ENST00000586457 TMEM2Q9UHN6 1383 aa16.19■□□□□ 0.18
CLIP3-203ENST00000586457 LTKP29376 864 aa16.18■□□□□ 0.18
CLIP3-203ENST00000586457 ZNF326Q5BKZ1 582 aaKnown RBP16.18■□□□□ 0.18
CLIP3-203ENST00000586457 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.18■□□□□ 0.18
CLIP3-203ENST00000586457 SYNMO15061 1565 aa16.17■□□□□ 0.18
CLIP3-203ENST00000586457 E9PCH4 1651 aa16.16■□□□□ 0.18
CLIP3-203ENST00000586457 MED14O60244 1454 aa16.16■□□□□ 0.18
CLIP3-203ENST00000586457 SENP3Q9H4L4 574 aaPredicted RBP16.15■□□□□ 0.18
CLIP3-203ENST00000586457 IQGAP1P46940 1657 aa16.14■□□□□ 0.18
CLIP3-203ENST00000586457 SLIT1O75093 1534 aa16.14■□□□□ 0.18
CLIP3-203ENST00000586457 KDM5AP29375 1690 aaKnown RBP16.14■□□□□ 0.17
CLIP3-203ENST00000586457 ADGRB3O60242 1522 aa16.14■□□□□ 0.17
CLIP3-203ENST00000586457 NEURL4Q96JN8 1562 aa16.13■□□□□ 0.17
CLIP3-203ENST00000586457 ARHGAP23Q9P227 1491 aa16.13■□□□□ 0.17
CLIP3-203ENST00000586457 UBAP1LF5GYI3 381 aa16.12■□□□□ 0.17
CLIP3-203ENST00000586457 SLC26A8Q96RN1 970 aa16.12■□□□□ 0.17
CLIP3-203ENST00000586457 SETD5Q9C0A6 1442 aa16.11■□□□□ 0.17
CLIP3-203ENST00000586457 NUTM2DQ5VT03 806 aaPredicted RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms