RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 KDM6BO15054 1643 aa9.09□□□□□ -0.95
LIG3-206ENST00000586058 MBD5Q9P267 1494 aa9.08□□□□□ -0.96
LIG3-206ENST00000586058 ZNF644Q9H582 1327 aaPredicted RBP9.08□□□□□ -0.96
LIG3-206ENST00000586058 PPRC1Q5VV67 1664 aaKnown RBP9.08□□□□□ -0.96
LIG3-206ENST00000586058 DHX57Q6P158 1386 aaKnown RBP9.08□□□□□ -0.96
LIG3-206ENST00000586058 KIDINS220Q9ULH0 1771 aa9.07□□□□□ -0.96
LIG3-206ENST00000586058 RBM42Q9BTD8 480 aaKnown RBP9.07□□□□□ -0.96
LIG3-206ENST00000586058 RRP7BPQ9NSQ0 103 aa9.07□□□□□ -0.96
LIG3-206ENST00000586058 ATF5Q9Y2D1 282 aaPredicted RBP9.07□□□□□ -0.96
LIG3-206ENST00000586058 KDM5CP41229 1560 aa9.07□□□□□ -0.96
LIG3-206ENST00000586058 NCOA1Q15788 1441 aa9.06□□□□□ -0.96
LIG3-206ENST00000586058 ERBINQ96RT1 1412 aa9.06□□□□□ -0.96
LIG3-206ENST00000586058 IQGAP3Q86VI3 1631 aa9.06□□□□□ -0.96
LIG3-206ENST00000586058 MYT1LQ9UL68 1186 aa9.06□□□□□ -0.96
LIG3-206ENST00000586058 KIF15Q9NS87 1388 aa9.06□□□□□ -0.96
LIG3-206ENST00000586058 RTEL1-TNFRSF6BF6WH68 1400 aa9.05□□□□□ -0.96
LIG3-206ENST00000586058 ANKRD50Q9ULJ7 1429 aa9.05□□□□□ -0.96
LIG3-206ENST00000586058 HNRNPMP52272 730 aaKnown RBP eCLIP9.05□□□□□ -0.96
LIG3-206ENST00000586058 DEPDC5O75140 1603 aa9.05□□□□□ -0.96
LIG3-206ENST00000586058 KDM5DQ9BY66 1539 aa9.05□□□□□ -0.96
LIG3-206ENST00000586058 POGZQ7Z3K3 1410 aa9.05□□□□□ -0.96
LIG3-206ENST00000586058 SCAPERQ9BY12 1400 aa9.05□□□□□ -0.96
LIG3-206ENST00000586058 TRIM52Q96A61 297 aa9.04□□□□□ -0.96
LIG3-206ENST00000586058 BCORL1Q5H9F3 1711 aa9.04□□□□□ -0.96
LIG3-206ENST00000586058 SPAG9O60271 1321 aaKnown RBP9.04□□□□□ -0.96
LIG3-206ENST00000586058 ZC3H13Q5T200 1668 aaKnown RBP9.04□□□□□ -0.96
LIG3-206ENST00000586058 DENND4BO75064 1496 aaPredicted RBP9.03□□□□□ -0.96
LIG3-206ENST00000586058 ABCA6Q8N139 1617 aa9.03□□□□□ -0.96
LIG3-206ENST00000586058 ARHGEF12Q9NZN5 1544 aa9.03□□□□□ -0.96
LIG3-206ENST00000586058 ZMYM4Q5VZL5 1548 aa9.02□□□□□ -0.97
LIG3-206ENST00000586058 TET3O43151 1660 aa9.02□□□□□ -0.97
LIG3-206ENST00000586058 TRAPPC8Q9Y2L5 1435 aa9.02□□□□□ -0.97
LIG3-206ENST00000586058 CEP152O94986 1710 aa9.02□□□□□ -0.97
LIG3-206ENST00000586058 RNF17Q9BXT8 1623 aaKnown RBP9.02□□□□□ -0.97
LIG3-206ENST00000586058 ZBTB22O15209 634 aa9.01□□□□□ -0.97
LIG3-206ENST00000586058 SPHKAPQ2M3C7 1700 aa9.01□□□□□ -0.97
LIG3-206ENST00000586058 FAM69CQ0P6D2 419 aa9□□□□□ -0.97
LIG3-206ENST00000586058 FAM135AQ9P2D6 1515 aa9□□□□□ -0.97
LIG3-206ENST00000586058 FRMPD1Q5SYB0 1578 aa8.99□□□□□ -0.97
LIG3-206ENST00000586058 DIP2CQ9Y2E4 1556 aa8.99□□□□□ -0.97
LIG3-206ENST00000586058 MAGI2Q86UL8 1455 aa8.99□□□□□ -0.97
LIG3-206ENST00000586058 MLH3Q9UHC1 1453 aa8.99□□□□□ -0.97
LIG3-206ENST00000586058 PRDM15P57071 1507 aaPredicted RBP8.99□□□□□ -0.97
LIG3-206ENST00000586058 KANK1Q14678 1352 aa8.99□□□□□ -0.97
LIG3-206ENST00000586058 KIF1BO60333 1816 aa8.98□□□□□ -0.97
LIG3-206ENST00000586058 ARHGEF40Q8TER5 1519 aa8.98□□□□□ -0.97
LIG3-206ENST00000586058 TONSLQ96HA7 1378 aa8.98□□□□□ -0.97
LIG3-206ENST00000586058 E9PCH4 1651 aa8.97□□□□□ -0.97
LIG3-206ENST00000586058 A2MP01023 1474 aa8.96□□□□□ -0.97
LIG3-206ENST00000586058 PZPP20742 1482 aa8.96□□□□□ -0.97
LIG3-206ENST00000586058 REREQ9P2R6 1566 aa8.96□□□□□ -0.97
LIG3-206ENST00000586058 CAMSAP1Q5T5Y3 1602 aa8.96□□□□□ -0.98
LIG3-206ENST00000586058 NUP155O75694 1391 aa8.96□□□□□ -0.98
LIG3-206ENST00000586058 AFAP1Q8N556 730 aa8.93□□□□□ -0.98
LIG3-206ENST00000586058 MPHOSPH9Q99550 1183 aa8.93□□□□□ -0.98
LIG3-206ENST00000586058 TIMELESSQ9UNS1 1208 aa8.93□□□□□ -0.98
LIG3-206ENST00000586058 EFCAB6Q5THR3 1501 aa8.93□□□□□ -0.98
LIG3-206ENST00000586058 MROH1Q8NDA8 1641 aa8.93□□□□□ -0.98
LIG3-206ENST00000586058 CFAP65Q6ZU64 1925 aaKnown RBP8.92□□□□□ -0.98
LIG3-206ENST00000586058 DHX29Q7Z478 1369 aaKnown RBP8.92□□□□□ -0.98
LIG3-206ENST00000586058 CHRDL2Q6WN34 429 aa8.92□□□□□ -0.98
LIG3-206ENST00000586058 VWDEQ8N2E2 1590 aa8.91□□□□□ -0.98
LIG3-206ENST00000586058 RPRD2Q5VT52 1461 aaKnown RBP8.91□□□□□ -0.98
LIG3-206ENST00000586058 NEUROD1Q13562 356 aa8.91□□□□□ -0.98
LIG3-206ENST00000586058 ZBTB12Q9Y330 459 aaPredicted RBP8.91□□□□□ -0.98
LIG3-206ENST00000586058 CLTCQ00610 1675 aaKnown RBP8.91□□□□□ -0.98
LIG3-206ENST00000586058 TRPM2O94759 1503 aa8.9□□□□□ -0.98
LIG3-206ENST00000586058 SLC24A1O60721 1099 aa8.9□□□□□ -0.98
LIG3-206ENST00000586058 POLR1AO95602 1720 aaPredicted RBP8.9□□□□□ -0.98
LIG3-206ENST00000586058 CCDC144AA2RUR9 1427 aa8.89□□□□□ -0.99
LIG3-206ENST00000586058 PREX1Q8TCU6 1659 aa8.89□□□□□ -0.99
LIG3-206ENST00000586058 LMTK2Q8IWU2 1503 aa8.89□□□□□ -0.99
LIG3-206ENST00000586058 ATP10AO60312 1499 aa8.89□□□□□ -0.99
LIG3-206ENST00000586058 FER1L4A9Z1Z3 1794 aa8.89□□□□□ -0.99
LIG3-206ENST00000586058 MROH2AA6NES4 1674 aa8.88□□□□□ -0.99
LIG3-206ENST00000586058 KIF3BO15066 747 aa8.88□□□□□ -0.99
LIG3-206ENST00000586058 PKD2Q13563 968 aa8.88□□□□□ -0.99
LIG3-206ENST00000586058 DNAJC5Q9H3Z4 198 aa8.88□□□□□ -0.99
LIG3-206ENST00000586058 AGLP35573 1532 aa8.88□□□□□ -0.99
LIG3-206ENST00000586058 RAPGEF3O95398 923 aa8.87□□□□□ -0.99
LIG3-206ENST00000586058 CLTCL1P53675 1640 aa8.87□□□□□ -0.99
LIG3-206ENST00000586058 ANKRD30BQ9BXX2 1392 aa8.86□□□□□ -0.99
LIG3-206ENST00000586058 ABCC3O15438 1527 aa8.86□□□□□ -0.99
LIG3-206ENST00000586058 IFT172Q9UG01 1749 aa8.86□□□□□ -0.99
LIG3-206ENST00000586058 AKT1S1Q96B36 256 aa8.86□□□□□ -0.99
LIG3-206ENST00000586058 YEATS2Q9ULM3 1422 aa8.86□□□□□ -0.99
LIG3-206ENST00000586058 SIN3AQ96ST3 1273 aa8.85□□□□□ -0.99
LIG3-206ENST00000586058 NEURL4Q96JN8 1562 aa8.85□□□□□ -0.99
LIG3-206ENST00000586058 MYO5BQ9ULV0 1848 aa8.84□□□□□ -0.99
LIG3-206ENST00000586058 SIGLEC1Q9BZZ2 1709 aa8.83□□□□□ -1
LIG3-206ENST00000586058 ATXN8OSP0DMR3 200 aa8.83□□□□□ -1
LIG3-206ENST00000586058 ESF1Q9H501 851 aaKnown RBP8.83□□□□□ -1
LIG3-206ENST00000586058 PPLO60437 1756 aa8.83□□□□□ -1
LIG3-206ENST00000586058 TRPM1Q7Z4N2 1603 aa8.83□□□□□ -1
LIG3-206ENST00000586058 GGT6Q6P531 493 aa8.82□□□□□ -1
LIG3-206ENST00000586058 PIK3C2BO00750 1634 aa8.82□□□□□ -1
LIG3-206ENST00000586058 KIAA1210Q9ULL0 1709 aa8.82□□□□□ -1
LIG3-206ENST00000586058 WASHC2CQ9Y4E1 1318 aa8.81□□□□□ -1
LIG3-206ENST00000586058 CNTLNQ9NXG0 1405 aa8.81□□□□□ -1
LIG3-206ENST00000586058 LAMC1P11047 1609 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms