RNA–Protein interactions for RNA: ENST00000585799.5

SMARCA4-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 3,842 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-208ENST00000585799 B4GALNT3Q6L9W6 998 aa16.66■□□□□ 0.26
SMARCA4-208ENST00000585799 PZPP20742 1482 aa16.66■□□□□ 0.26
SMARCA4-208ENST00000585799 ERCC6L2Q5T890 1561 aa16.66■□□□□ 0.26
SMARCA4-208ENST00000585799 FAM69CQ0P6D2 419 aa16.65■□□□□ 0.26
SMARCA4-208ENST00000585799 CDCA8Q53HL2 280 aa16.64■□□□□ 0.25
SMARCA4-208ENST00000585799 CFAP70Q5T0N1 1121 aa16.64■□□□□ 0.25
SMARCA4-208ENST00000585799 KTN1Q86UP2 1357 aaKnown RBP16.64■□□□□ 0.25
SMARCA4-208ENST00000585799 CCDC136Q96JN2 1154 aa16.63■□□□□ 0.25
SMARCA4-208ENST00000585799 TRAPPC8Q9Y2L5 1435 aa16.63■□□□□ 0.25
SMARCA4-208ENST00000585799 ITSN2Q9NZM3 1697 aa16.62■□□□□ 0.25
SMARCA4-208ENST00000585799 NEUROD2Q15784 382 aa16.62■□□□□ 0.25
SMARCA4-208ENST00000585799 ABCA8O94911 1581 aa16.61■□□□□ 0.25
SMARCA4-208ENST00000585799 TMEM132EQ6IEE7 984 aa16.61■□□□□ 0.25
SMARCA4-208ENST00000585799 ABCC10Q5T3U5 1492 aa16.59■□□□□ 0.25
SMARCA4-208ENST00000585799 RALBP1Q15311 655 aa16.59■□□□□ 0.25
SMARCA4-208ENST00000585799 POGKQ9P215 609 aa16.59■□□□□ 0.25
SMARCA4-208ENST00000585799 PLCH2O75038 1416 aa16.59■□□□□ 0.25
SMARCA4-208ENST00000585799 CHD1O14646 1710 aa16.58■□□□□ 0.24
SMARCA4-208ENST00000585799 NLRP13Q86W25 1043 aa16.57■□□□□ 0.24
SMARCA4-208ENST00000585799 ABCC2Q92887 1545 aa16.56■□□□□ 0.24
SMARCA4-208ENST00000585799 DENND4BO75064 1496 aaPredicted RBP16.56■□□□□ 0.24
SMARCA4-208ENST00000585799 FANCAO15360 1455 aa16.55■□□□□ 0.24
SMARCA4-208ENST00000585799 CANXP27824 592 aaKnown RBP16.55■□□□□ 0.24
SMARCA4-208ENST00000585799 MYBBP1AQ9BQG0 1328 aaKnown RBP16.55■□□□□ 0.24
SMARCA4-208ENST00000585799 ADGRL1O94910 1474 aa16.55■□□□□ 0.24
SMARCA4-208ENST00000585799 SRPK2P78362 688 aaKnown RBP16.55■□□□□ 0.24
SMARCA4-208ENST00000585799 PPM1GO15355 546 aaPredicted RBP16.54■□□□□ 0.24
SMARCA4-208ENST00000585799 ASXL2Q76L83 1435 aa16.53■□□□□ 0.24
SMARCA4-208ENST00000585799 MBD5Q9P267 1494 aa16.53■□□□□ 0.24
SMARCA4-208ENST00000585799 GCC2Q8IWJ2 1684 aa16.53■□□□□ 0.24
SMARCA4-208ENST00000585799 CD109Q6YHK3 1445 aa16.53■□□□□ 0.24
SMARCA4-208ENST00000585799 CCDC146Q8IYE0 955 aa16.53■□□□□ 0.24
SMARCA4-208ENST00000585799 TRHP20396 242 aaPredicted RBP16.52■□□□□ 0.24
SMARCA4-208ENST00000585799 ADGRL2O95490 1459 aa16.52■□□□□ 0.23
SMARCA4-208ENST00000585799 PPP4R2Q9NY27 417 aa16.51■□□□□ 0.23
SMARCA4-208ENST00000585799 TEX14Q8IWB6 1497 aa16.51■□□□□ 0.23
SMARCA4-208ENST00000585799 FAM135AQ9P2D6 1515 aa16.5■□□□□ 0.23
SMARCA4-208ENST00000585799 TSHZ2Q9NRE2 1034 aa16.5■□□□□ 0.23
SMARCA4-208ENST00000585799 ZBED9Q6R2W3 1325 aa16.5■□□□□ 0.23
SMARCA4-208ENST00000585799 MORC1Q86VD1 984 aa16.5■□□□□ 0.23
SMARCA4-208ENST00000585799 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.5■□□□□ 0.234e-7■■□□□ 14.3
SMARCA4-208ENST00000585799 BCL11AQ9H165 835 aa16.49■□□□□ 0.23
SMARCA4-208ENST00000585799 NPM2Q86SE8 214 aaKnown RBP16.49■□□□□ 0.23
SMARCA4-208ENST00000585799 NUDCQ9Y266 331 aa16.49■□□□□ 0.23
SMARCA4-208ENST00000585799 PLEKHG5O94827 1062 aa16.47■□□□□ 0.23
SMARCA4-208ENST00000585799 SHANK2Q9UPX8 1470 aa16.47■□□□□ 0.23
SMARCA4-208ENST00000585799 WDR7Q9Y4E6 1490 aa16.47■□□□□ 0.23
SMARCA4-208ENST00000585799 ADGRF5Q8IZF2 1346 aa16.47■□□□□ 0.23
SMARCA4-208ENST00000585799 TTC37Q6PGP7 1564 aa16.46■□□□□ 0.23
SMARCA4-208ENST00000585799 PNISRQ8TF01 805 aaKnown RBP16.46■□□□□ 0.23
SMARCA4-208ENST00000585799 EIF3AQ14152 1382 aaKnown RBP16.45■□□□□ 0.22
SMARCA4-208ENST00000585799 SAMD9LQ8IVG5 1584 aa16.45■□□□□ 0.22
SMARCA4-208ENST00000585799 U2SURPO15042 1029 aaKnown RBP16.44■□□□□ 0.22
SMARCA4-208ENST00000585799 MINK1Q8N4C8 1332 aaPredicted RBP16.44■□□□□ 0.22
SMARCA4-208ENST00000585799 ERBINQ96RT1 1412 aa16.43■□□□□ 0.22
SMARCA4-208ENST00000585799 CDC42BPAQ5VT25 1732 aa16.42■□□□□ 0.22
SMARCA4-208ENST00000585799 VGFO15240 615 aaPredicted RBP16.42■□□□□ 0.22
SMARCA4-208ENST00000585799 RCAN3Q9UKA8 241 aa16.42■□□□□ 0.22
SMARCA4-208ENST00000585799 CDCA7LQ96GN5 454 aa16.42■□□□□ 0.22
SMARCA4-208ENST00000585799 DISP3Q9P2K9 1392 aa16.42■□□□□ 0.22
SMARCA4-208ENST00000585799 NUTM2FA1L443 756 aa16.42■□□□□ 0.22
SMARCA4-208ENST00000585799 PLIN1O60240 522 aa16.42■□□□□ 0.22
SMARCA4-208ENST00000585799 CENPJQ9HC77 1338 aaPredicted RBP16.42■□□□□ 0.22
SMARCA4-208ENST00000585799 DHX29Q7Z478 1369 aaKnown RBP16.42■□□□□ 0.22
SMARCA4-208ENST00000585799 ARHGEF12Q9NZN5 1544 aa16.41■□□□□ 0.22
SMARCA4-208ENST00000585799 NEFMP07197 916 aa16.4■□□□□ 0.22
SMARCA4-208ENST00000585799 SLC12A5Q9H2X9 1139 aa16.4■□□□□ 0.22
SMARCA4-208ENST00000585799 DUOX2Q9NRD8 1548 aa16.4■□□□□ 0.22
SMARCA4-208ENST00000585799 SOX12O15370 315 aa16.4■□□□□ 0.22
SMARCA4-208ENST00000585799 RRP7AQ9Y3A4 280 aaKnown RBP16.4■□□□□ 0.22
SMARCA4-208ENST00000585799 FBXO31Q5XUX0 539 aaPredicted RBP16.39■□□□□ 0.21
SMARCA4-208ENST00000585799 CFAP53Q96M91 514 aa16.39■□□□□ 0.21
SMARCA4-208ENST00000585799 CABP2Q9NPB3 220 aa16.39■□□□□ 0.21
SMARCA4-208ENST00000585799 ADAMTS8Q9UP79 889 aa16.39■□□□□ 0.21
SMARCA4-208ENST00000585799 PRAG1Q86YV5 1406 aa16.39■□□□□ 0.21
SMARCA4-208ENST00000585799 RBM19Q9Y4C8 960 aaKnown RBP16.38■□□□□ 0.21
SMARCA4-208ENST00000585799 RALGAPBQ86X10 1494 aa16.37■□□□□ 0.21
SMARCA4-208ENST00000585799 SLC24A1O60721 1099 aa16.37■□□□□ 0.21
SMARCA4-208ENST00000585799 KDM5BQ9UGL1 1544 aa16.36■□□□□ 0.21
SMARCA4-208ENST00000585799 ADGBQ8N7X0 1667 aa16.36■□□□□ 0.21
SMARCA4-208ENST00000585799 APAF1O14727 1248 aa16.36■□□□□ 0.21
SMARCA4-208ENST00000585799 TESK2Q96S53 571 aa16.36■□□□□ 0.21
SMARCA4-208ENST00000585799 U2AF1L5P0DN76 240 aaPredicted RBP16.35■□□□□ 0.21
SMARCA4-208ENST00000585799 U2AF1Q01081 240 aaKnown RBP eCLIP16.35■□□□□ 0.21
SMARCA4-208ENST00000585799 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.35■□□□□ 0.213e-7■■■■□ 26.2
SMARCA4-208ENST00000585799 FRAT1Q92837 279 aaPredicted RBP16.35■□□□□ 0.21
SMARCA4-208ENST00000585799 PPP2R1AP30153 589 aa16.35■□□□□ 0.21
SMARCA4-208ENST00000585799 IDI1Q13907 227 aa16.35■□□□□ 0.21
SMARCA4-208ENST00000585799 SPATA31E1Q6ZUB1 1445 aa16.35■□□□□ 0.21
SMARCA4-208ENST00000585799 BRD4O60885 1362 aaPredicted RBP16.34■□□□□ 0.21
SMARCA4-208ENST00000585799 A2MP01023 1474 aa16.34■□□□□ 0.21
SMARCA4-208ENST00000585799 ARHGEF5Q12774 1597 aa16.33■□□□□ 0.2
SMARCA4-208ENST00000585799 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.33■□□□□ 0.2
SMARCA4-208ENST00000585799 STAC3Q96MF2 364 aa16.33■□□□□ 0.2
SMARCA4-208ENST00000585799 EXOC6Q8TAG9 804 aa16.32■□□□□ 0.2
SMARCA4-208ENST00000585799 ZCCHC11Q5TAX3 1644 aaKnown RBP16.32■□□□□ 0.2
SMARCA4-208ENST00000585799 DAXXQ9UER7 740 aaPredicted RBP16.31■□□□□ 0.2
SMARCA4-208ENST00000585799 LAS1LQ9Y4W2 734 aaKnown RBP16.31■□□□□ 0.2
SMARCA4-208ENST00000585799 PREX2Q70Z35 1606 aa16.31■□□□□ 0.2
SMARCA4-208ENST00000585799 ADCY10Q96PN6 1610 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms