RNA–Protein interactions for RNA: ENST00000585395.6

LSM7-202, Transcript of LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM7, Length 621 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM7-202ENST00000585395 TSPY10P0CW01 314 aa35.68■■■■□ 3.3
LSM7-202ENST00000585395 PKD2Q13563 968 aa35.68■■■■□ 3.3
LSM7-202ENST00000585395 ZNF142P52746 1687 aaPredicted RBP35.65■■■■□ 3.3
LSM7-202ENST00000585395 MYO3AQ8NEV4 1616 aa35.62■■■■□ 3.29
LSM7-202ENST00000585395 PLXNC1O60486 1568 aa35.62■■■■□ 3.29
LSM7-202ENST00000585395 TCOF1Q13428 1488 aaKnown RBP35.6■■■■□ 3.29
LSM7-202ENST00000585395 CLTCQ00610 1675 aaKnown RBP35.6■■■■□ 3.29
LSM7-202ENST00000585395 PTPN23Q9H3S7 1636 aa35.59■■■■□ 3.29
LSM7-202ENST00000585395 CEP170BQ9Y4F5 1589 aaPredicted RBP35.59■■■■□ 3.29
LSM7-202ENST00000585395 PTPRKQ15262 1439 aa35.57■■■■□ 3.29
LSM7-202ENST00000585395 GGT6Q6P531 493 aa35.55■■■■□ 3.28
LSM7-202ENST00000585395 FGD6Q6ZV73 1430 aa35.54■■■■□ 3.28
LSM7-202ENST00000585395 DHX29Q7Z478 1369 aaKnown RBP35.52■■■■□ 3.28
LSM7-202ENST00000585395 PPP6R1Q9UPN7 881 aa35.51■■■■□ 3.28
LSM7-202ENST00000585395 MAST1Q9Y2H9 1570 aa35.5■■■■□ 3.27
LSM7-202ENST00000585395 KIF3BO15066 747 aa35.46■■■■□ 3.27
LSM7-202ENST00000585395 CROCC2H7BZ55 1655 aa35.43■■■■□ 3.26
LSM7-202ENST00000585395 A2ML1A8K2U0 1454 aa35.41■■■■□ 3.26
LSM7-202ENST00000585395 PPARGC1BQ86YN6 1023 aaKnown RBP35.41■■■■□ 3.26
LSM7-202ENST00000585395 FAM50AQ14320 339 aaKnown RBP35.4■■■■□ 3.26
LSM7-202ENST00000585395 DNMT1P26358 1616 aaKnown RBP35.39■■■■□ 3.26
LSM7-202ENST00000585395 DAPK1P53355 1430 aa35.38■■■■□ 3.25
LSM7-202ENST00000585395 SHANK2Q9UPX8 1470 aa35.37■■■■□ 3.25
LSM7-202ENST00000585395 ABCC5O15440 1437 aa35.37■■■■□ 3.25
LSM7-202ENST00000585395 CPS1P31327 1500 aa35.37■■■■□ 3.25
LSM7-202ENST00000585395 TOM1O60784 492 aa35.36■■■■□ 3.25
LSM7-202ENST00000585395 HSPA1LP34931 641 aa35.36■■■■□ 3.25
LSM7-202ENST00000585395 MED1Q15648 1581 aaPredicted RBP35.36■■■■□ 3.25
LSM7-202ENST00000585395 SCAF1Q9H7N4 1312 aaKnown RBP35.33■■■■□ 3.25
LSM7-202ENST00000585395 PIP4K2BP78356 416 aa35.31■■■■□ 3.24
LSM7-202ENST00000585395 DUOX2Q9NRD8 1548 aa35.31■■■■□ 3.24
LSM7-202ENST00000585395 POLR1AO95602 1720 aaPredicted RBP35.3■■■■□ 3.24
LSM7-202ENST00000585395 KIF15Q9NS87 1388 aa35.29■■■■□ 3.24
LSM7-202ENST00000585395 EIF2AK4Q9P2K8 1649 aaKnown RBP35.28■■■■□ 3.24
LSM7-202ENST00000585395 RRP7BPQ9NSQ0 103 aa35.28■■■■□ 3.24
LSM7-202ENST00000585395 CHIC2Q9UKJ5 165 aa35.28■■■■□ 3.24
LSM7-202ENST00000585395 KDM5DQ9BY66 1539 aa35.27■■■■□ 3.24
LSM7-202ENST00000585395 WASHC2CQ9Y4E1 1318 aa35.27■■■■□ 3.24
LSM7-202ENST00000585395 NEURL4Q96JN8 1562 aa35.26■■■■□ 3.24
LSM7-202ENST00000585395 FAM135AQ9P2D6 1515 aa35.26■■■■□ 3.23
LSM7-202ENST00000585395 ANKRD30AQ9BXX3 1397 aa35.25■■■■□ 3.23
LSM7-202ENST00000585395 TNRQ92752 1358 aa35.24■■■■□ 3.23
LSM7-202ENST00000585395 RNF17Q9BXT8 1623 aaKnown RBP35.22■■■■□ 3.23
LSM7-202ENST00000585395 PZPP20742 1482 aa35.18■■■■□ 3.22
LSM7-202ENST00000585395 ERBINQ96RT1 1412 aa35.18■■■■□ 3.22
LSM7-202ENST00000585395 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP35.18■■■■□ 3.22
LSM7-202ENST00000585395 ANKLE2Q86XL3 938 aa35.18■■■■□ 3.22
LSM7-202ENST00000585395 FBXO31Q5XUX0 539 aaPredicted RBP35.17■■■■□ 3.22
LSM7-202ENST00000585395 ZC3H13Q5T200 1668 aaKnown RBP35.14■■■■□ 3.22
LSM7-202ENST00000585395 VWDEQ8N2E2 1590 aa35.14■■■■□ 3.22
LSM7-202ENST00000585395 THEMISQ8N1K5 641 aaPredicted RBP35.13■■■■□ 3.21
LSM7-202ENST00000585395 PHF23Q9BUL5 403 aaPredicted RBP35.13■■■■□ 3.21
LSM7-202ENST00000585395 RRBP1Q9P2E9 1410 aaKnown RBP35.12■■■■□ 3.21
LSM7-202ENST00000585395 MED14O60244 1454 aa35.09■■■■□ 3.21
LSM7-202ENST00000585395 NLRP1Q9C000 1473 aa35.09■■■■□ 3.21
LSM7-202ENST00000585395 GRWD1Q9BQ67 446 aaKnown RBP eCLIP35.09■■■■□ 3.216e-11■■■□□ 14.8
LSM7-202ENST00000585395 DEPDC5O75140 1603 aa35.09■■■■□ 3.21
LSM7-202ENST00000585395 CEP152O94986 1710 aa35.09■■■■□ 3.21
LSM7-202ENST00000585395 ADGRL2O95490 1459 aa35.09■■■■□ 3.21
LSM7-202ENST00000585395 ABCC3O15438 1527 aa35.08■■■■□ 3.21
LSM7-202ENST00000585395 NPHP4O75161 1426 aaPredicted RBP35.06■■■■□ 3.2
LSM7-202ENST00000585395 MROH1Q8NDA8 1641 aa35.06■■■■□ 3.2
LSM7-202ENST00000585395 KANK1Q14678 1352 aa35.06■■■■□ 3.2
LSM7-202ENST00000585395 ITGAEP38570 1179 aa35.06■■■■□ 3.2
LSM7-202ENST00000585395 ALKQ9UM73 1620 aa35.06■■■■□ 3.2
LSM7-202ENST00000585395 UGGT1Q9NYU2 1555 aa35.05■■■■□ 3.2
LSM7-202ENST00000585395 PRDM15P57071 1507 aaPredicted RBP35.02■■■■□ 3.2
LSM7-202ENST00000585395 IQGAP1P46940 1657 aa34.98■■■■□ 3.19
LSM7-202ENST00000585395 CFAP65Q6ZU64 1925 aaKnown RBP34.96■■■■□ 3.19
LSM7-202ENST00000585395 ANKRD50Q9ULJ7 1429 aa34.96■■■■□ 3.19
LSM7-202ENST00000585395 LRRC7Q96NW7 1537 aa34.92■■■■□ 3.18
LSM7-202ENST00000585395 SYNMO15061 1565 aa34.91■■■■□ 3.18
LSM7-202ENST00000585395 ROCK1Q13464 1354 aa34.89■■■■□ 3.18
LSM7-202ENST00000585395 STRCP1A6NGW2 1772 aa34.88■■■■□ 3.17
LSM7-202ENST00000585395 ERVK-7P63135 1459 aa34.88■■■■□ 3.17
LSM7-202ENST00000585395 ARHGAP31Q2M1Z3 1444 aa34.81■■■■□ 3.16
LSM7-202ENST00000585395 SENP3Q9H4L4 574 aaPredicted RBP34.81■■■■□ 3.16
LSM7-202ENST00000585395 LMTK2Q8IWU2 1503 aa34.79■■■■□ 3.16
LSM7-202ENST00000585395 EFCAB6Q5THR3 1501 aa34.74■■■■□ 3.15
LSM7-202ENST00000585395 UNC13BO14795 1591 aa34.74■■■■□ 3.15
LSM7-202ENST00000585395 RGS17Q9UGC6 210 aaPredicted RBP34.73■■■■□ 3.15
LSM7-202ENST00000585395 SCAF11Q99590 1463 aaKnown RBP34.71■■■■□ 3.15
LSM7-202ENST00000585395 UBR1Q8IWV7 1749 aa34.7■■■■□ 3.15
LSM7-202ENST00000585395 TET3O43151 1660 aa34.69■■■■□ 3.14
LSM7-202ENST00000585395 STAG3Q9UJ98 1225 aa34.68■■■■□ 3.14
LSM7-202ENST00000585395 GCC2Q8IWJ2 1684 aa34.66■■■■□ 3.14
LSM7-202ENST00000585395 SLIT1O75093 1534 aa34.63■■■■□ 3.13
LSM7-202ENST00000585395 ARHGAP23Q9P227 1491 aa34.63■■■■□ 3.13
LSM7-202ENST00000585395 NUP155O75694 1391 aa34.62■■■■□ 3.13
LSM7-202ENST00000585395 RPRD2Q5VT52 1461 aaKnown RBP34.61■■■■□ 3.13
LSM7-202ENST00000585395 TXNDC2Q86VQ3 553 aa34.61■■■■□ 3.13
LSM7-202ENST00000585395 IQGAP3Q86VI3 1631 aa34.61■■■■□ 3.13
LSM7-202ENST00000585395 XIRP1Q702N8 1843 aaKnown RBP34.6■■■■□ 3.13
LSM7-202ENST00000585395 LTKP29376 864 aa34.6■■■■□ 3.13
LSM7-202ENST00000585395 FAM135BQ49AJ0 1406 aa34.6■■■■□ 3.13
LSM7-202ENST00000585395 PIK3C2BO00750 1634 aa34.59■■■■□ 3.13
LSM7-202ENST00000585395 HFM1A2PYH4 1435 aa34.58■■■■□ 3.13
LSM7-202ENST00000585395 EID1Q9Y6B2 187 aa34.57■■■■□ 3.12
LSM7-202ENST00000585395 NOS1P29475 1434 aa34.55■■■■□ 3.12
LSM7-202ENST00000585395 NAIPQ13075 1403 aa34.55■■■■□ 3.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms