RNA–Protein interactions for RNA: ENST00000583697.1

CDK5RAP3-229, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 3

Gene CDK5RAP3, Length 852 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-229	ENST00000583697	RNF17	Q9BXT8	1623 aa	Known RBP	13.79	□□□□□ -0.2
CDK5RAP3-229	ENST00000583697	CROCC2	H7BZ55	1655 aa		13.79	□□□□□ -0.2
CDK5RAP3-229	ENST00000583697	LTBP4	Q8N2S1	1624 aa		13.79	□□□□□ -0.2
CDK5RAP3-229	ENST00000583697	PZP	P20742	1482 aa		13.78	□□□□□ -0.2
CDK5RAP3-229	ENST00000583697	IQSEC2	Q5JU85	1478 aa		13.78	□□□□□ -0.2
CDK5RAP3-229	ENST00000583697	DNMT1	P26358	1616 aa	Known RBP	13.78	□□□□□ -0.2
CDK5RAP3-229	ENST00000583697	A2ML1	A8K2U0	1454 aa		13.77	□□□□□ -0.21
CDK5RAP3-229	ENST00000583697	KIF3B	O15066	747 aa		13.77	□□□□□ -0.21
CDK5RAP3-229	ENST00000583697	MYOM3	Q5VTT5	1437 aa		13.77	□□□□□ -0.21
CDK5RAP3-229	ENST00000583697	TCOF1	Q13428	1488 aa	Known RBP	13.76	□□□□□ -0.21
CDK5RAP3-229	ENST00000583697	MIA2	Q96PC5	1412 aa		13.76	□□□□□ -0.21
CDK5RAP3-229	ENST00000583697	LOC105371045	A0A1W2PR82	267 aa		13.76	□□□□□ -0.21
CDK5RAP3-229	ENST00000583697	TSPY4	P0CV99	314 aa		13.76	□□□□□ -0.21
CDK5RAP3-229	ENST00000583697	TSPY10	P0CW01	314 aa		13.76	□□□□□ -0.21
CDK5RAP3-229	ENST00000583697	CEP152	O94986	1710 aa		13.74	□□□□□ -0.21
CDK5RAP3-229	ENST00000583697	TNR	Q92752	1358 aa		13.73	□□□□□ -0.21
CDK5RAP3-229	ENST00000583697	PTPN23	Q9H3S7	1636 aa		13.73	□□□□□ -0.21
CDK5RAP3-229	ENST00000583697	NCKAP5L	Q9HCH0	1330 aa		13.72	□□□□□ -0.21
CDK5RAP3-229	ENST00000583697	WASHC2C	Q9Y4E1	1318 aa		13.72	□□□□□ -0.21
CDK5RAP3-229	ENST00000583697	PKD2	Q13563	968 aa		13.72	□□□□□ -0.21
CDK5RAP3-229	ENST00000583697	ABCC3	O15438	1527 aa		13.72	□□□□□ -0.21
CDK5RAP3-229	ENST00000583697	NLRP1	Q9C000	1473 aa		13.72	□□□□□ -0.21
CDK5RAP3-229	ENST00000583697	DUOX2	Q9NRD8	1548 aa		13.71	□□□□□ -0.21
CDK5RAP3-229	ENST00000583697	SHANK2	Q9UPX8	1470 aa		13.71	□□□□□ -0.21
CDK5RAP3-229	ENST00000583697	MROH1	Q8NDA8	1641 aa		13.71	□□□□□ -0.22
CDK5RAP3-229	ENST00000583697	NEURL4	Q96JN8	1562 aa		13.71	□□□□□ -0.22
CDK5RAP3-229	ENST00000583697	UGGT1	Q9NYU2	1555 aa		13.71	□□□□□ -0.22
CDK5RAP3-229	ENST00000583697	APLP2	Q06481	763 aa		13.7	□□□□□ -0.22
CDK5RAP3-229	ENST00000583697	KANK4	Q5T7N3	995 aa	Predicted RBP	13.7	□□□□□ -0.22
CDK5RAP3-229	ENST00000583697	SPATA31D1	Q6ZQQ2	1576 aa		13.7	□□□□□ -0.22
CDK5RAP3-229	ENST00000583697	PRDM15	P57071	1507 aa	Predicted RBP	13.69	□□□□□ -0.22
CDK5RAP3-229	ENST00000583697	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	13.68	□□□□□ -0.22
CDK5RAP3-229	ENST00000583697	ERBIN	Q96RT1	1412 aa		13.67	□□□□□ -0.22
CDK5RAP3-229	ENST00000583697	DEPDC5	O75140	1603 aa		13.67	□□□□□ -0.22
CDK5RAP3-229	ENST00000583697	IQGAP1	P46940	1657 aa		13.66	□□□□□ -0.22
CDK5RAP3-229	ENST00000583697	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.66	□□□□□ -0.22
CDK5RAP3-229	ENST00000583697	ERVK-7	P63135	1459 aa		13.66	□□□□□ -0.22
CDK5RAP3-229	ENST00000583697	CPS1	P31327	1500 aa		13.65	□□□□□ -0.22
CDK5RAP3-229	ENST00000583697	KIF15	Q9NS87	1388 aa		13.65	□□□□□ -0.22
CDK5RAP3-229	ENST00000583697	DAPK1	P53355	1430 aa		13.64	□□□□□ -0.23
CDK5RAP3-229	ENST00000583697	FGD6	Q6ZV73	1430 aa		13.64	□□□□□ -0.23
CDK5RAP3-229	ENST00000583697	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.64	□□□□□ -0.23
CDK5RAP3-229	ENST00000583697	UBR1	Q8IWV7	1749 aa		13.64	□□□□□ -0.23
CDK5RAP3-229	ENST00000583697	ABCC5	O15440	1437 aa		13.63	□□□□□ -0.23
CDK5RAP3-229	ENST00000583697	SYNM	O15061	1565 aa		13.62	□□□□□ -0.23
CDK5RAP3-229	ENST00000583697	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.61	□□□□□ -0.23
CDK5RAP3-229	ENST00000583697	NPHP4	O75161	1426 aa	Predicted RBP	13.61	□□□□□ -0.23
CDK5RAP3-229	ENST00000583697	MED14	O60244	1454 aa		13.61	□□□□□ -0.23
CDK5RAP3-229	ENST00000583697	DISP3	Q9P2K9	1392 aa		13.6	□□□□□ -0.23
CDK5RAP3-229	ENST00000583697	ANKLE2	Q86XL3	938 aa		13.6	□□□□□ -0.23
CDK5RAP3-229	ENST00000583697	VWDE	Q8N2E2	1590 aa		13.6	□□□□□ -0.23
CDK5RAP3-229	ENST00000583697	KANK1	Q14678	1352 aa		13.58	□□□□□ -0.23
CDK5RAP3-229	ENST00000583697	UBAP1L	F5GYI3	381 aa		13.58	□□□□□ -0.24
CDK5RAP3-229	ENST00000583697	CFAP65	Q6ZU64	1925 aa	Known RBP	13.58	□□□□□ -0.24
CDK5RAP3-229	ENST00000583697	ANKRD30A	Q9BXX3	1397 aa		13.58	□□□□□ -0.24
CDK5RAP3-229	ENST00000583697	PIK3C2B	O00750	1634 aa		13.57	□□□□□ -0.24
CDK5RAP3-229	ENST00000583697	ARHGAP31	Q2M1Z3	1444 aa		13.57	□□□□□ -0.24
CDK5RAP3-229	ENST00000583697	RRP7BP	Q9NSQ0	103 aa		13.57	□□□□□ -0.24
CDK5RAP3-229	ENST00000583697	KDM5A	P29375	1690 aa	Known RBP	13.56	□□□□□ -0.24
CDK5RAP3-229	ENST00000583697	ADGRL2	O95490	1459 aa		13.55	□□□□□ -0.24
CDK5RAP3-229	ENST00000583697	SCAF11	Q99590	1463 aa	Known RBP	13.55	□□□□□ -0.24
CDK5RAP3-229	ENST00000583697	EFCAB6	Q5THR3	1501 aa		13.55	□□□□□ -0.24
CDK5RAP3-229	ENST00000583697	LMTK2	Q8IWU2	1503 aa		13.55	□□□□□ -0.24
CDK5RAP3-229	ENST00000583697	SLIT1	O75093	1534 aa		13.54	□□□□□ -0.24
CDK5RAP3-229	ENST00000583697	SCAF1	Q9H7N4	1312 aa	Known RBP	13.54	□□□□□ -0.24
CDK5RAP3-229	ENST00000583697	STRCP1	A6NGW2	1772 aa		13.53	□□□□□ -0.24
CDK5RAP3-229	ENST00000583697	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.53	□□□□□ -0.24	5e-7	■□□□□ 10.7
CDK5RAP3-229	ENST00000583697	CHIC2	Q9UKJ5	165 aa		13.52	□□□□□ -0.25
CDK5RAP3-229	ENST00000583697	ARHGAP23	Q9P227	1491 aa		13.52	□□□□□ -0.25
CDK5RAP3-229	ENST00000583697	ADGRB3	O60242	1522 aa		13.51	□□□□□ -0.25
CDK5RAP3-229	ENST00000583697	TOM1	O60784	492 aa		13.5	□□□□□ -0.25
CDK5RAP3-229	ENST00000583697	FAM50A	Q14320	339 aa	Known RBP	13.5	□□□□□ -0.25
CDK5RAP3-229	ENST00000583697	TET3	O43151	1660 aa		13.5	□□□□□ -0.25
CDK5RAP3-229	ENST00000583697	GCC2	Q8IWJ2	1684 aa		13.5	□□□□□ -0.25
CDK5RAP3-229	ENST00000583697	UNC13B	O14795	1591 aa		13.49	□□□□□ -0.25
CDK5RAP3-229	ENST00000583697	PIP4K2B	P78356	416 aa		13.49	□□□□□ -0.25
CDK5RAP3-229	ENST00000583697	LRRC7	Q96NW7	1537 aa		13.49	□□□□□ -0.25
CDK5RAP3-229	ENST00000583697	STAG3	Q9UJ98	1225 aa		13.48	□□□□□ -0.25
CDK5RAP3-229	ENST00000583697	RPRD2	Q5VT52	1461 aa	Known RBP	13.48	□□□□□ -0.25
CDK5RAP3-229	ENST00000583697	ANKRD50	Q9ULJ7	1429 aa		13.47	□□□□□ -0.25
CDK5RAP3-229	ENST00000583697	EID1	Q9Y6B2	187 aa		13.47	□□□□□ -0.25
CDK5RAP3-229	ENST00000583697	MED1	Q15648	1581 aa	Predicted RBP	13.46	□□□□□ -0.25
CDK5RAP3-229	ENST00000583697	ALK	Q9UM73	1620 aa		13.46	□□□□□ -0.26
CDK5RAP3-229	ENST00000583697	TMEM2	Q9UHN6	1383 aa		13.45	□□□□□ -0.26
CDK5RAP3-229	ENST00000583697	TXNDC2	Q86VQ3	553 aa		13.45	□□□□□ -0.26
CDK5RAP3-229	ENST00000583697	NOS1	P29475	1434 aa		13.45	□□□□□ -0.26
CDK5RAP3-229	ENST00000583697	XIRP1	Q702N8	1843 aa	Known RBP	13.44	□□□□□ -0.26
CDK5RAP3-229	ENST00000583697	IQGAP3	Q86VI3	1631 aa		13.43	□□□□□ -0.26
CDK5RAP3-229	ENST00000583697	ILDR2	Q71H61	639 aa		13.43	□□□□□ -0.26
CDK5RAP3-229	ENST00000583697	MYO5B	Q9ULV0	1848 aa		13.43	□□□□□ -0.26
CDK5RAP3-229	ENST00000583697	LTK	P29376	864 aa		13.42	□□□□□ -0.26
CDK5RAP3-229	ENST00000583697	HSPA1L	P34931	641 aa		13.42	□□□□□ -0.26
CDK5RAP3-229	ENST00000583697		E9PCH4	1651 aa		13.42	□□□□□ -0.26
CDK5RAP3-229	ENST00000583697	NWD1	Q149M9	1564 aa		13.41	□□□□□ -0.26
CDK5RAP3-229	ENST00000583697	TMEM131L	A2VDJ0	1609 aa		13.39	□□□□□ -0.27
CDK5RAP3-229	ENST00000583697	IDI1	Q13907	227 aa		13.39	□□□□□ -0.27
CDK5RAP3-229	ENST00000583697	ROCK1	Q13464	1354 aa		13.39	□□□□□ -0.27
CDK5RAP3-229	ENST00000583697	NKTR	P30414	1462 aa	Known RBP	13.39	□□□□□ -0.27
CDK5RAP3-229	ENST00000583697	SOCS7	O14512	581 aa		13.38	□□□□□ -0.27
CDK5RAP3-229	ENST00000583697	SLC52A1	Q9NWF4	448 aa		13.38	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms