RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 PPP1R3GB7ZBB8 358 aa11.9□□□□□ -0.5
SMCHD1-208ENST00000583344 TSHZ2Q9NRE2 1034 aa11.89□□□□□ -0.51
SMCHD1-208ENST00000583344 BHMG1C9JSJ3 638 aaPredicted RBP11.88□□□□□ -0.51
SMCHD1-208ENST00000583344 PROX2Q3B8N5 592 aa11.88□□□□□ -0.51
SMCHD1-208ENST00000583344 RBM33Q96EV2 1170 aaKnown RBP11.88□□□□□ -0.51
SMCHD1-208ENST00000583344 EPAS1Q99814 870 aa11.88□□□□□ -0.51
SMCHD1-208ENST00000583344 HCSTQ9UBK5 93 aa11.87□□□□□ -0.51
SMCHD1-208ENST00000583344 NBR1Q14596 966 aa11.85□□□□□ -0.51
SMCHD1-208ENST00000583344 C6orf132Q5T0Z8 1188 aa11.85□□□□□ -0.51
SMCHD1-208ENST00000583344 SPDYE16A6NNV3 312 aaPredicted RBP11.84□□□□□ -0.51
SMCHD1-208ENST00000583344 MRPL50Q8N5N7 158 aaKnown RBP11.83□□□□□ -0.52
SMCHD1-208ENST00000583344 NBPF3Q9H094 633 aa11.82□□□□□ -0.52
SMCHD1-208ENST00000583344 ARIH1Q9Y4X5 557 aaPredicted RBP11.82□□□□□ -0.52
SMCHD1-208ENST00000583344 PTPN5P54829 565 aa11.8□□□□□ -0.52
SMCHD1-208ENST00000583344 EN1Q05925 392 aaPredicted RBP11.8□□□□□ -0.52
SMCHD1-208ENST00000583344 TSR1Q2NL82 804 aaKnown RBP11.8□□□□□ -0.52
SMCHD1-208ENST00000583344 RABGEF1Q9UJ41 708 aa11.8□□□□□ -0.52
SMCHD1-208ENST00000583344 GRXCR2A6NFK2 248 aa11.79□□□□□ -0.52
SMCHD1-208ENST00000583344 GOLGA8CPA6NN73 597 aa11.79□□□□□ -0.52
SMCHD1-208ENST00000583344 MAP3K7O43318 606 aa11.79□□□□□ -0.52
SMCHD1-208ENST00000583344 PRIM1P49642 420 aaKnown RBP11.79□□□□□ -0.52
SMCHD1-208ENST00000583344 WNT2BQ93097 391 aa11.78□□□□□ -0.52
SMCHD1-208ENST00000583344 THSD4Q6ZMP0 1018 aa11.77□□□□□ -0.53
SMCHD1-208ENST00000583344 PLA2G2EQ9NZK7 142 aa11.76□□□□□ -0.53
SMCHD1-208ENST00000583344 KIAA1468Q9P260 1216 aa11.76□□□□□ -0.53
SMCHD1-208ENST00000583344 SEPT9Q9UHD8 586 aaPredicted RBP11.74□□□□□ -0.53
SMCHD1-208ENST00000583344 TRIM6-TRIM34B2RNG4 842 aa11.73□□□□□ -0.53
SMCHD1-208ENST00000583344 KCNV2Q8TDN2 545 aa11.72□□□□□ -0.53
SMCHD1-208ENST00000583344 ONECUT3O60422 494 aaPredicted RBP11.7□□□□□ -0.54
SMCHD1-208ENST00000583344 OSBPP22059 807 aa11.7□□□□□ -0.54
SMCHD1-208ENST00000583344 ANKK1Q8NFD2 765 aa11.69□□□□□ -0.54
SMCHD1-208ENST00000583344 CDHR5Q9HBB8 845 aa11.69□□□□□ -0.54
SMCHD1-208ENST00000583344 TSKSQ9UJT2 592 aa11.69□□□□□ -0.54
SMCHD1-208ENST00000583344 BCAMP50895 628 aa11.68□□□□□ -0.54
SMCHD1-208ENST00000583344 LAPTM4BQ86VI4 370 aa11.68□□□□□ -0.54
SMCHD1-208ENST00000583344 ZFRQ96KR1 1074 aaKnown RBP11.67□□□□□ -0.54
SMCHD1-208ENST00000583344 PLCB2Q00722 1185 aa11.66□□□□□ -0.54
SMCHD1-208ENST00000583344 ARHGEF1Q92888 912 aaKnown RBP11.65□□□□□ -0.54
SMCHD1-208ENST00000583344 CDCA7LQ96GN5 454 aa11.65□□□□□ -0.54
SMCHD1-208ENST00000583344 FAM198AQ9UFP1 575 aa11.65□□□□□ -0.54
SMCHD1-208ENST00000583344 MLLT3P42568 568 aaPredicted RBP11.64□□□□□ -0.55
SMCHD1-208ENST00000583344 PRSS12P56730 875 aa11.63□□□□□ -0.55
SMCHD1-208ENST00000583344 FAM98CQ17RN3 349 aaKnown RBP11.63□□□□□ -0.55
SMCHD1-208ENST00000583344 SOWAHBA6NEL2 793 aa11.62□□□□□ -0.55
SMCHD1-208ENST00000583344 SMAPO00193 183 aa11.62□□□□□ -0.55
SMCHD1-208ENST00000583344 PACS2Q86VP3 889 aa11.62□□□□□ -0.55
SMCHD1-208ENST00000583344 C3orf80F5H4A9 247 aa11.61□□□□□ -0.55
SMCHD1-208ENST00000583344 CERKQ8TCT0 537 aa11.61□□□□□ -0.55
SMCHD1-208ENST00000583344 NPDC1Q9NQX5 325 aaPredicted RBP11.57□□□□□ -0.56
SMCHD1-208ENST00000583344 WBP1LQ9NX94 342 aa11.57□□□□□ -0.56
SMCHD1-208ENST00000583344 LRCH3Q96II8 777 aa11.56□□□□□ -0.56
SMCHD1-208ENST00000583344 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.56□□□□□ -0.56
SMCHD1-208ENST00000583344 P3H3Q8IVL6 736 aa11.55□□□□□ -0.56
SMCHD1-208ENST00000583344 TATDN2Q93075 761 aa11.55□□□□□ -0.56
SMCHD1-208ENST00000583344 PNMA3Q9UL41 463 aa11.55□□□□□ -0.56
SMCHD1-208ENST00000583344 NBPF26B4DH59 902 aa11.54□□□□□ -0.56
SMCHD1-208ENST00000583344 PADI6Q6TGC4 694 aa11.54□□□□□ -0.56
SMCHD1-208ENST00000583344 HPS5Q9UPZ3 1129 aa11.54□□□□□ -0.56
SMCHD1-208ENST00000583344 NUDT18Q6ZVK8 323 aa11.52□□□□□ -0.57
SMCHD1-208ENST00000583344 SAMD7Q7Z3H4 446 aa11.52□□□□□ -0.57
SMCHD1-208ENST00000583344 RBM27Q9P2N5 1060 aaKnown RBP11.52□□□□□ -0.57
SMCHD1-208ENST00000583344 SEMA3EO15041 775 aa11.51□□□□□ -0.57
SMCHD1-208ENST00000583344 HAP1P54257 671 aaPredicted RBP11.51□□□□□ -0.57
SMCHD1-208ENST00000583344 TSR3Q9UJK0 312 aaKnown RBP11.51□□□□□ -0.57
SMCHD1-208ENST00000583344 TTC13Q8NBP0 860 aa11.5□□□□□ -0.57
SMCHD1-208ENST00000583344 IFFO2Q5TF58 517 aa11.49□□□□□ -0.57
SMCHD1-208ENST00000583344 NYAP1Q6ZVC0 841 aa11.48□□□□□ -0.57
SMCHD1-208ENST00000583344 ITGBL1O95965 494 aaPredicted RBP11.47□□□□□ -0.57
SMCHD1-208ENST00000583344 PTGDRQ13258 359 aa11.46□□□□□ -0.57
SMCHD1-208ENST00000583344 A0A0G2JS52 829 aa11.45□□□□□ -0.58
SMCHD1-208ENST00000583344 PPP4CP60510 307 aa11.45□□□□□ -0.58
SMCHD1-208ENST00000583344 NUTM2FA1L443 756 aa11.44□□□□□ -0.58
SMCHD1-208ENST00000583344 RNF40O75150 1001 aa11.44□□□□□ -0.58
SMCHD1-208ENST00000583344 KDM2AQ9Y2K7 1162 aa11.41□□□□□ -0.58
SMCHD1-208ENST00000583344 SWT1Q5T5J6 900 aaKnown RBP11.4□□□□□ -0.58
SMCHD1-208ENST00000583344 EYA1Q99502 592 aa11.4□□□□□ -0.58
SMCHD1-208ENST00000583344 KCNC4Q03721 635 aa11.39□□□□□ -0.59
SMCHD1-208ENST00000583344 TESPA1A2RU30 521 aaPredicted RBP11.38□□□□□ -0.59
SMCHD1-208ENST00000583344 HDGFP51858 240 aaKnown RBP11.38□□□□□ -0.59
SMCHD1-208ENST00000583344 FAM161AQ3B820 660 aa11.38□□□□□ -0.59
SMCHD1-208ENST00000583344 RBM26Q5T8P6 1007 aaKnown RBP11.37□□□□□ -0.59
SMCHD1-208ENST00000583344 FCHSD2O94868 740 aa11.35□□□□□ -0.59
SMCHD1-208ENST00000583344 ADGRG1Q9Y653 693 aa11.35□□□□□ -0.59
SMCHD1-208ENST00000583344 APLP1P51693 650 aa11.34□□□□□ -0.59
SMCHD1-208ENST00000583344 TJAP1Q5JTD0 557 aa11.33□□□□□ -0.6
SMCHD1-208ENST00000583344 SLF2Q8IX21 1173 aa11.33□□□□□ -0.6
SMCHD1-208ENST00000583344 MTRQ99707 1265 aa11.32□□□□□ -0.6
SMCHD1-208ENST00000583344 RBM46Q8TBY0 533 aaKnown RBP11.31□□□□□ -0.6
SMCHD1-208ENST00000583344 RGS20O76081 388 aa11.3□□□□□ -0.6
SMCHD1-208ENST00000583344 DNAJB2P25686 324 aa11.3□□□□□ -0.6
SMCHD1-208ENST00000583344 SMYD5Q6GMV2 418 aa11.29□□□□□ -0.6
SMCHD1-208ENST00000583344 RCCD1A6NED2 376 aa11.28□□□□□ -0.6
SMCHD1-208ENST00000583344 ZNF516Q92618 1163 aa11.28□□□□□ -0.6
SMCHD1-208ENST00000583344 TMEM134Q9H6X4 195 aa11.28□□□□□ -0.6
SMCHD1-208ENST00000583344 IL21Q9HBE4 155 aa11.28□□□□□ -0.6
SMCHD1-208ENST00000583344 GPR37O15354 613 aa11.27□□□□□ -0.61
SMCHD1-208ENST00000583344 FECHP22830 423 aa11.26□□□□□ -0.61
SMCHD1-208ENST00000583344 SLC4A3P48751 1232 aa11.26□□□□□ -0.61
SMCHD1-208ENST00000583344 HIC1Q14526 733 aa11.26□□□□□ -0.61
SMCHD1-208ENST00000583344 NECTIN2Q92692 538 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms