RNA–Protein interactions for RNA: ENST00000579716.2

COPS3-216, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 419 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-216ENST00000579716 RABGEF1Q9UJ41 708 aa11.72□□□□□ -0.53
COPS3-216ENST00000579716 PHF14O94880 888 aa11.71□□□□□ -0.53
COPS3-216ENST00000579716 TYW1BQ6NUM6 668 aa11.69□□□□□ -0.54
COPS3-216ENST00000579716 A0A0G2JS52 829 aa11.68□□□□□ -0.54
COPS3-216ENST00000579716 GOLGA8CPA6NN73 597 aa11.68□□□□□ -0.54
COPS3-216ENST00000579716 NBPF3Q9H094 633 aa11.68□□□□□ -0.54
COPS3-216ENST00000579716 DPYSL4O14531 572 aa11.67□□□□□ -0.54
COPS3-216ENST00000579716 C6orf132Q5T0Z8 1188 aa11.67□□□□□ -0.54
COPS3-216ENST00000579716 KIAA1468Q9P260 1216 aa11.67□□□□□ -0.54
COPS3-216ENST00000579716 BCAMP50895 628 aa11.66□□□□□ -0.54
COPS3-216ENST00000579716 FBXW7Q969H0 707 aa11.65□□□□□ -0.54
COPS3-216ENST00000579716 RGS20O76081 388 aa11.63□□□□□ -0.55
COPS3-216ENST00000579716 DCAF8L2P0C7V8 631 aa11.63□□□□□ -0.55
COPS3-216ENST00000579716 SOWAHBA6NEL2 793 aa11.62□□□□□ -0.55
COPS3-216ENST00000579716 ERICH6Q7L0X2 663 aa11.62□□□□□ -0.55
COPS3-216ENST00000579716 ONECUT3O60422 494 aaPredicted RBP11.61□□□□□ -0.55
COPS3-216ENST00000579716 ITGBL1O95965 494 aaPredicted RBP11.61□□□□□ -0.55
COPS3-216ENST00000579716 LAPTM4BQ86VI4 370 aa11.61□□□□□ -0.55
COPS3-216ENST00000579716 ZFRQ96KR1 1074 aaKnown RBP11.61□□□□□ -0.55
COPS3-216ENST00000579716 ARXQ96QS3 562 aa11.61□□□□□ -0.55
COPS3-216ENST00000579716 EPAS1Q99814 870 aa11.6□□□□□ -0.55
COPS3-216ENST00000579716 SEPT9Q9UHD8 586 aaPredicted RBP11.6□□□□□ -0.55
COPS3-216ENST00000579716 ANKK1Q8NFD2 765 aa11.59□□□□□ -0.55
COPS3-216ENST00000579716 DDX12PQ92771 950 aa11.59□□□□□ -0.55
COPS3-216ENST00000579716 WBP1LQ9NX94 342 aa11.59□□□□□ -0.55
COPS3-216ENST00000579716 TRIM6-TRIM34B2RNG4 842 aa11.57□□□□□ -0.56
COPS3-216ENST00000579716 PRIM1P49642 420 aaKnown RBP11.57□□□□□ -0.56
COPS3-216ENST00000579716 RBM33Q96EV2 1170 aaKnown RBP11.57□□□□□ -0.56
COPS3-216ENST00000579716 TSR1Q2NL82 804 aaKnown RBP11.55□□□□□ -0.56
COPS3-216ENST00000579716 TSKSQ9UJT2 592 aa11.55□□□□□ -0.56
COPS3-216ENST00000579716 C3orf80F5H4A9 247 aa11.54□□□□□ -0.56
COPS3-216ENST00000579716 FAM198AQ9UFP1 575 aa11.53□□□□□ -0.56
COPS3-216ENST00000579716 IRX2Q9BZI1 471 aaPredicted RBP11.51□□□□□ -0.57
COPS3-216ENST00000579716 EN1Q05925 392 aaPredicted RBP11.5□□□□□ -0.57
COPS3-216ENST00000579716 PDIA6Q15084 440 aa11.5□□□□□ -0.57
COPS3-216ENST00000579716 FAM98CQ17RN3 349 aaKnown RBP11.5□□□□□ -0.57
COPS3-216ENST00000579716 BBXQ8WY36 941 aaPredicted RBP11.5□□□□□ -0.57
COPS3-216ENST00000579716 NBR1Q14596 966 aa11.46□□□□□ -0.57
COPS3-216ENST00000579716 NYAP1Q6ZVC0 841 aa11.46□□□□□ -0.57
COPS3-216ENST00000579716 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.44□□□□□ -0.58
COPS3-216ENST00000579716 TSR3Q9UJK0 312 aaKnown RBP11.44□□□□□ -0.58
COPS3-216ENST00000579716 HPS5Q9UPZ3 1129 aa11.44□□□□□ -0.58
COPS3-216ENST00000579716 SMAPO00193 183 aa11.43□□□□□ -0.58
COPS3-216ENST00000579716 KCNC4Q03721 635 aa11.43□□□□□ -0.58
COPS3-216ENST00000579716 MAP3K7O43318 606 aa11.42□□□□□ -0.58
COPS3-216ENST00000579716 ARIH1Q9Y4X5 557 aaPredicted RBP11.42□□□□□ -0.58
COPS3-216ENST00000579716 CDCA7LQ96GN5 454 aa11.41□□□□□ -0.58
COPS3-216ENST00000579716 LCE2BO14633 110 aa11.4□□□□□ -0.58
COPS3-216ENST00000579716 LRCH3Q96II8 777 aa11.4□□□□□ -0.58
COPS3-216ENST00000579716 SPDYE16A6NNV3 312 aaPredicted RBP11.39□□□□□ -0.59
COPS3-216ENST00000579716 PRSS12P56730 875 aa11.39□□□□□ -0.59
COPS3-216ENST00000579716 TJAP1Q5JTD0 557 aa11.39□□□□□ -0.59
COPS3-216ENST00000579716 PACS2Q86VP3 889 aa11.39□□□□□ -0.59
COPS3-216ENST00000579716 OSBPP22059 807 aa11.38□□□□□ -0.59
COPS3-216ENST00000579716 SAMD7Q7Z3H4 446 aa11.37□□□□□ -0.59
COPS3-216ENST00000579716 RANGAP1P46060 587 aaPredicted RBP11.36□□□□□ -0.59
COPS3-216ENST00000579716 E2F4Q16254 413 aa11.36□□□□□ -0.59
COPS3-216ENST00000579716 SPRYD3Q8NCJ5 442 aa11.36□□□□□ -0.59
COPS3-216ENST00000579716 CDHR5Q9HBB8 845 aa11.36□□□□□ -0.59
COPS3-216ENST00000579716 GRXCR2A6NFK2 248 aa11.34□□□□□ -0.59
COPS3-216ENST00000579716 TATDN2Q93075 761 aa11.34□□□□□ -0.59
COPS3-216ENST00000579716 NPDC1Q9NQX5 325 aaPredicted RBP11.33□□□□□ -0.6
COPS3-216ENST00000579716 PRKCSHP14314 528 aaPredicted RBP11.32□□□□□ -0.6
COPS3-216ENST00000579716 PPP4CP60510 307 aa11.32□□□□□ -0.6
COPS3-216ENST00000579716 TTC13Q8NBP0 860 aa11.31□□□□□ -0.6
COPS3-216ENST00000579716 ZNF516Q92618 1163 aa11.3□□□□□ -0.6
COPS3-216ENST00000579716 PNMA3Q9UL41 463 aa11.29□□□□□ -0.6
COPS3-216ENST00000579716 NUDT18Q6ZVK8 323 aa11.28□□□□□ -0.6
COPS3-216ENST00000579716 MTRQ99707 1265 aa11.28□□□□□ -0.6
COPS3-216ENST00000579716 CERKQ8TCT0 537 aa11.27□□□□□ -0.61
COPS3-216ENST00000579716 APLP1P51693 650 aa11.26□□□□□ -0.61
COPS3-216ENST00000579716 Q6ZNB5 142 aa11.26□□□□□ -0.61
COPS3-216ENST00000579716 PAXIP1Q6ZW49 1069 aaPredicted RBP11.25□□□□□ -0.61
COPS3-216ENST00000579716 PPP1R18Q6NYC8 613 aa11.24□□□□□ -0.61
COPS3-216ENST00000579716 NKX2-3Q8TAU0 364 aa11.24□□□□□ -0.61
COPS3-216ENST00000579716 CFAP44Q96MT7 982 aa11.22□□□□□ -0.61
COPS3-216ENST00000579716 RBM27Q9P2N5 1060 aaKnown RBP11.22□□□□□ -0.61
COPS3-216ENST00000579716 NBPF26B4DH59 902 aa11.21□□□□□ -0.61
COPS3-216ENST00000579716 HOMEZQ8IX15 550 aa11.21□□□□□ -0.61
COPS3-216ENST00000579716 PRKD2Q9BZL6 878 aa11.21□□□□□ -0.61
COPS3-216ENST00000579716 IL21Q9HBE4 155 aa11.21□□□□□ -0.61
COPS3-216ENST00000579716 PADI6Q6TGC4 694 aa11.2□□□□□ -0.62
COPS3-216ENST00000579716 EYA1Q99502 592 aa11.2□□□□□ -0.62
COPS3-216ENST00000579716 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.2□□□□□ -0.62
COPS3-216ENST00000579716 GFRA3O60609 400 aa11.19□□□□□ -0.62
COPS3-216ENST00000579716 SWT1Q5T5J6 900 aaKnown RBP11.18□□□□□ -0.62
COPS3-216ENST00000579716 TIMELESSQ9UNS1 1208 aa11.18□□□□□ -0.62
COPS3-216ENST00000579716 WDR70Q9NW82 654 aa11.17□□□□□ -0.62
COPS3-216ENST00000579716 MLLT3P42568 568 aaPredicted RBP11.16□□□□□ -0.62
COPS3-216ENST00000579716 BCANQ96GW7 911 aa11.15□□□□□ -0.62
COPS3-216ENST00000579716 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.15□□□□□ -0.62
COPS3-216ENST00000579716 TRAF7Q6Q0C0 670 aa11.14□□□□□ -0.63
COPS3-216ENST00000579716 LAPTM4AQ15012 233 aa11.13□□□□□ -0.63
COPS3-216ENST00000579716 EMID1Q96A84 441 aaPredicted RBP11.13□□□□□ -0.63
COPS3-216ENST00000579716 V9GY48 417 aaPredicted RBP11.12□□□□□ -0.63
COPS3-216ENST00000579716 RNF40O75150 1001 aa11.11□□□□□ -0.63
COPS3-216ENST00000579716 COPS2P61201 443 aa11.1□□□□□ -0.63
COPS3-216ENST00000579716 NRG2O14511 850 aaPredicted RBP11.09□□□□□ -0.63
COPS3-216ENST00000579716 TSHZ2Q9NRE2 1034 aa11.08□□□□□ -0.64
COPS3-216ENST00000579716 TULP1O00294 542 aaPredicted RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms