RNA–Protein interactions for RNA: ENST00000575338.1

SMG6-217, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-217ENST00000575338 TRAPPC8Q9Y2L5 1435 aa9.51□□□□□ -0.89
SMG6-217ENST00000575338 CCER2I3L3R5 266 aa9.51□□□□□ -0.89
SMG6-217ENST00000575338 STAC3Q96MF2 364 aa9.51□□□□□ -0.89
SMG6-217ENST00000575338 LAMC1P11047 1609 aa9.51□□□□□ -0.89
SMG6-217ENST00000575338 RALGAPBQ86X10 1494 aa9.51□□□□□ -0.89
SMG6-217ENST00000575338 ARID4BQ4LE39 1312 aaPredicted RBP9.51□□□□□ -0.89
SMG6-217ENST00000575338 DDX10Q13206 875 aaKnown RBP9.5□□□□□ -0.89
SMG6-217ENST00000575338 NEO1Q92859 1461 aa9.5□□□□□ -0.89
SMG6-217ENST00000575338 BCORL1Q5H9F3 1711 aa9.5□□□□□ -0.89
SMG6-217ENST00000575338 SCAPERQ9BY12 1400 aa9.49□□□□□ -0.89
SMG6-217ENST00000575338 PRDM15P57071 1507 aaPredicted RBP9.49□□□□□ -0.89
SMG6-217ENST00000575338 KIDINS220Q9ULH0 1771 aa9.49□□□□□ -0.89
SMG6-217ENST00000575338 KDM5CP41229 1560 aa9.49□□□□□ -0.89
SMG6-217ENST00000575338 NEURL4Q96JN8 1562 aa9.49□□□□□ -0.89
SMG6-217ENST00000575338 HECW2Q9P2P5 1572 aa9.49□□□□□ -0.89
SMG6-217ENST00000575338 E9PCH4 1651 aa9.48□□□□□ -0.89
SMG6-217ENST00000575338 CD109Q6YHK3 1445 aa9.48□□□□□ -0.89
SMG6-217ENST00000575338 HSPA5P11021 654 aaKnown RBP9.48□□□□□ -0.89
SMG6-217ENST00000575338 TRPM1Q7Z4N2 1603 aa9.48□□□□□ -0.89
SMG6-217ENST00000575338 RNF17Q9BXT8 1623 aaKnown RBP9.48□□□□□ -0.89
SMG6-217ENST00000575338 KIF1BO60333 1816 aa9.47□□□□□ -0.89
SMG6-217ENST00000575338 TRPM2O94759 1503 aa9.47□□□□□ -0.89
SMG6-217ENST00000575338 GLI2P10070 1586 aa9.47□□□□□ -0.89
SMG6-217ENST00000575338 ROCK2O75116 1388 aaKnown RBP9.47□□□□□ -0.89
SMG6-217ENST00000575338 DHX29Q7Z478 1369 aaKnown RBP9.47□□□□□ -0.89
SMG6-217ENST00000575338 CNTLNQ9NXG0 1405 aa9.47□□□□□ -0.89
SMG6-217ENST00000575338 MLH3Q9UHC1 1453 aa9.47□□□□□ -0.89
SMG6-217ENST00000575338 VWDEQ8N2E2 1590 aa9.46□□□□□ -0.89
SMG6-217ENST00000575338 MAP3K4Q9Y6R4 1608 aa9.46□□□□□ -0.89
SMG6-217ENST00000575338 YTHDC1Q96MU7 727 aaKnown RBP9.46□□□□□ -0.9
SMG6-217ENST00000575338 MYT1LQ9UL68 1186 aa9.46□□□□□ -0.9
SMG6-217ENST00000575338 SPATA31E1Q6ZUB1 1445 aa9.46□□□□□ -0.9
SMG6-217ENST00000575338 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.45□□□□□ -0.9
SMG6-217ENST00000575338 USP47Q96K76 1375 aa9.45□□□□□ -0.9
SMG6-217ENST00000575338 POGZQ7Z3K3 1410 aa9.45□□□□□ -0.9
SMG6-217ENST00000575338 ZC3H13Q5T200 1668 aaKnown RBP9.45□□□□□ -0.9
SMG6-217ENST00000575338 KIAA1210Q9ULL0 1709 aa9.45□□□□□ -0.9
SMG6-217ENST00000575338 NBPF8Q3BBV2 869 aa9.44□□□□□ -0.9
SMG6-217ENST00000575338 CCDC7Q96M83 1385 aa9.44□□□□□ -0.9
SMG6-217ENST00000575338 LMTK2Q8IWU2 1503 aa9.44□□□□□ -0.9
SMG6-217ENST00000575338 A2MP01023 1474 aa9.43□□□□□ -0.9
SMG6-217ENST00000575338 AFAP1Q8N556 730 aa9.43□□□□□ -0.9
SMG6-217ENST00000575338 RICTORQ6R327 1708 aa9.42□□□□□ -0.9
SMG6-217ENST00000575338 EFCAB6Q5THR3 1501 aa9.42□□□□□ -0.9
SMG6-217ENST00000575338 PRAG1Q86YV5 1406 aa9.42□□□□□ -0.9
SMG6-217ENST00000575338 WASHC2AQ641Q2 1341 aa9.42□□□□□ -0.9
SMG6-217ENST00000575338 DCAF11Q8TEB1 546 aa9.42□□□□□ -0.9
SMG6-217ENST00000575338 HIRIP3Q9BW71 556 aaPredicted RBP9.42□□□□□ -0.9
SMG6-217ENST00000575338 PTPRTO14522 1441 aa9.41□□□□□ -0.9
SMG6-217ENST00000575338 SLC24A1O60721 1099 aa9.41□□□□□ -0.9
SMG6-217ENST00000575338 ZNF326Q5BKZ1 582 aaKnown RBP9.41□□□□□ -0.9
SMG6-217ENST00000575338 CARD11Q9BXL7 1154 aa9.41□□□□□ -0.9
SMG6-217ENST00000575338 MROH1Q8NDA8 1641 aa9.41□□□□□ -0.9
SMG6-217ENST00000575338 PLA2R1Q13018 1463 aa9.4□□□□□ -0.91
SMG6-217ENST00000575338 GPRASP1Q5JY77 1395 aa9.39□□□□□ -0.91
SMG6-217ENST00000575338 KTN1Q86UP2 1357 aaKnown RBP9.39□□□□□ -0.91
SMG6-217ENST00000575338 CLTCL1P53675 1640 aa9.39□□□□□ -0.91
SMG6-217ENST00000575338 ABCA6Q8N139 1617 aa9.39□□□□□ -0.91
SMG6-217ENST00000575338 KIF3BO15066 747 aa9.39□□□□□ -0.91
SMG6-217ENST00000575338 MADDQ8WXG6 1647 aa9.38□□□□□ -0.91
SMG6-217ENST00000575338 SCAF1Q9H7N4 1312 aaKnown RBP9.38□□□□□ -0.91
SMG6-217ENST00000575338 IFT172Q9UG01 1749 aa9.38□□□□□ -0.91
SMG6-217ENST00000575338 PPRC1Q5VV67 1664 aaKnown RBP9.38□□□□□ -0.91
SMG6-217ENST00000575338 DIP2BQ9P265 1576 aa9.37□□□□□ -0.91
SMG6-217ENST00000575338 KIF7Q2M1P5 1343 aa9.37□□□□□ -0.91
SMG6-217ENST00000575338 ZMYM4Q5VZL5 1548 aa9.37□□□□□ -0.91
SMG6-217ENST00000575338 IQGAP1P46940 1657 aa9.37□□□□□ -0.91
SMG6-217ENST00000575338 KDM2AQ9Y2K7 1162 aa9.37□□□□□ -0.91
SMG6-217ENST00000575338 GTF3C3Q9Y5Q9 886 aa9.37□□□□□ -0.91
SMG6-217ENST00000575338 CAMSAP1Q5T5Y3 1602 aa9.37□□□□□ -0.91
SMG6-217ENST00000575338 DIP2CQ9Y2E4 1556 aa9.37□□□□□ -0.91
SMG6-217ENST00000575338 MYOM2P54296 1465 aa9.36□□□□□ -0.91
SMG6-217ENST00000575338 EIF3AQ14152 1382 aaKnown RBP9.36□□□□□ -0.91
SMG6-217ENST00000575338 FRMPD1Q5SYB0 1578 aa9.35□□□□□ -0.91
SMG6-217ENST00000575338 REREQ9P2R6 1566 aa9.35□□□□□ -0.91
SMG6-217ENST00000575338 RGL3Q3MIN7 710 aa9.34□□□□□ -0.91
SMG6-217ENST00000575338 CDCA8Q53HL2 280 aa9.34□□□□□ -0.91
SMG6-217ENST00000575338 PPLO60437 1756 aa9.33□□□□□ -0.92
SMG6-217ENST00000575338 CYB5RLQ6IPT4 315 aa9.33□□□□□ -0.92
SMG6-217ENST00000575338 PRKRIP1Q9H875 184 aaPredicted RBP9.33□□□□□ -0.92
SMG6-217ENST00000575338 TSPOAP1O95153 1857 aa9.32□□□□□ -0.92
SMG6-217ENST00000575338 ABCC3O15438 1527 aa9.32□□□□□ -0.92
SMG6-217ENST00000575338 PELP1Q8IZL8 1130 aaKnown RBP9.32□□□□□ -0.92
SMG6-217ENST00000575338 COL17A1Q9UMD9 1497 aaPredicted RBP9.32□□□□□ -0.92
SMG6-217ENST00000575338 WASHC2CQ9Y4E1 1318 aa9.31□□□□□ -0.92
SMG6-217ENST00000575338 ARHGAP31Q2M1Z3 1444 aa9.31□□□□□ -0.92
SMG6-217ENST00000575338 ADGRB3O60242 1522 aa9.31□□□□□ -0.92
SMG6-217ENST00000575338 ST20-MTHFSA0A0A6YYL1 179 aa9.31□□□□□ -0.92
SMG6-217ENST00000575338 TMF1P82094 1093 aa9.31□□□□□ -0.92
SMG6-217ENST00000575338 SCAF11Q99590 1463 aaKnown RBP9.31□□□□□ -0.92
SMG6-217ENST00000575338 SETBP1Q9Y6X0 1596 aa9.31□□□□□ -0.92
SMG6-217ENST00000575338 CFAP65Q6ZU64 1925 aaKnown RBP9.31□□□□□ -0.92
SMG6-217ENST00000575338 PIK3C2BO00750 1634 aa9.31□□□□□ -0.92
SMG6-217ENST00000575338 RPGRIP1LQ68CZ1 1315 aa9.31□□□□□ -0.92
SMG6-217ENST00000575338 MROH2AA6NES4 1674 aa9.3□□□□□ -0.92
SMG6-217ENST00000575338 KDM5AP29375 1690 aaKnown RBP9.3□□□□□ -0.92
SMG6-217ENST00000575338 PPP6R1Q9UPN7 881 aa9.3□□□□□ -0.92
SMG6-217ENST00000575338 KIF13AQ9H1H9 1805 aa9.3□□□□□ -0.92
SMG6-217ENST00000575338 MYO3AQ8NEV4 1616 aa9.3□□□□□ -0.92
SMG6-217ENST00000575338 C11orf95C9JLR9 678 aaPredicted RBP9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms