RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 DNMT1P26358 1616 aaKnown RBP16.84■□□□□ 0.29
CHD3-216ENST00000573936 ADGBQ8N7X0 1667 aa16.82■□□□□ 0.28
CHD3-216ENST00000573936 CLTCQ00610 1675 aaKnown RBP16.81■□□□□ 0.28
CHD3-216ENST00000573936 RRBP1Q9P2E9 1410 aaKnown RBP16.8■□□□□ 0.28
CHD3-216ENST00000573936 ANKRD30AQ9BXX3 1397 aa16.8■□□□□ 0.28
CHD3-216ENST00000573936 CHIC2Q9UKJ5 165 aa16.79■□□□□ 0.28
CHD3-216ENST00000573936 PTPRTO14522 1441 aa16.79■□□□□ 0.28
CHD3-216ENST00000573936 CROCC2H7BZ55 1655 aa16.78■□□□□ 0.28
CHD3-216ENST00000573936 PPP6R1Q9UPN7 881 aa16.78■□□□□ 0.28
CHD3-216ENST00000573936 NPATQ14207 1427 aa16.78■□□□□ 0.28
CHD3-216ENST00000573936 RRP7BPQ9NSQ0 103 aa16.77■□□□□ 0.28
CHD3-216ENST00000573936 NCOA1Q15788 1441 aa16.77■□□□□ 0.27
CHD3-216ENST00000573936 MYO3AQ8NEV4 1616 aa16.77■□□□□ 0.27
CHD3-216ENST00000573936 KIF15Q9NS87 1388 aa16.77■□□□□ 0.27
CHD3-216ENST00000573936 KIF3BO15066 747 aa16.76■□□□□ 0.27
CHD3-216ENST00000573936 ZMYM3Q14202 1370 aa16.76■□□□□ 0.27
CHD3-216ENST00000573936 DUOX2Q9NRD8 1548 aa16.75■□□□□ 0.27
CHD3-216ENST00000573936 ADGRL2O95490 1459 aa16.75■□□□□ 0.27
CHD3-216ENST00000573936 CAMSAP1Q5T5Y3 1602 aa16.75■□□□□ 0.27
CHD3-216ENST00000573936 GGT6Q6P531 493 aa16.75■□□□□ 0.27
CHD3-216ENST00000573936 ZNF142P52746 1687 aaPredicted RBP16.75■□□□□ 0.27
CHD3-216ENST00000573936 ITGAEP38570 1179 aa16.73■□□□□ 0.27
CHD3-216ENST00000573936 ROCK1Q13464 1354 aa16.72■□□□□ 0.27
CHD3-216ENST00000573936 CEP170BQ9Y4F5 1589 aaPredicted RBP16.72■□□□□ 0.27
CHD3-216ENST00000573936 PTPRKQ15262 1439 aa16.71■□□□□ 0.27
CHD3-216ENST00000573936 ERBINQ96RT1 1412 aa16.71■□□□□ 0.27
CHD3-216ENST00000573936 SPATA31D1Q6ZQQ2 1576 aa16.7■□□□□ 0.26
CHD3-216ENST00000573936 LTBP4Q8N2S1 1624 aa16.7■□□□□ 0.26
CHD3-216ENST00000573936 EIF2AK4Q9P2K8 1649 aaKnown RBP16.7■□□□□ 0.26
CHD3-216ENST00000573936 IQSEC2Q5JU85 1478 aa16.67■□□□□ 0.26
CHD3-216ENST00000573936 FAM135AQ9P2D6 1515 aa16.66■□□□□ 0.26
CHD3-216ENST00000573936 UBAP1LF5GYI3 381 aa16.66■□□□□ 0.26
CHD3-216ENST00000573936 PLA2R1Q13018 1463 aa16.66■□□□□ 0.26
CHD3-216ENST00000573936 NCKAP5LQ9HCH0 1330 aa16.66■□□□□ 0.26
CHD3-216ENST00000573936 WASHC2CQ9Y4E1 1318 aa16.66■□□□□ 0.26
CHD3-216ENST00000573936 ANKRD50Q9ULJ7 1429 aa16.65■□□□□ 0.26
CHD3-216ENST00000573936 KDM5DQ9BY66 1539 aa16.65■□□□□ 0.26
CHD3-216ENST00000573936 RNF17Q9BXT8 1623 aaKnown RBP16.63■□□□□ 0.25
CHD3-216ENST00000573936 PKD2Q13563 968 aa16.63■□□□□ 0.25
CHD3-216ENST00000573936 KANK1Q14678 1352 aa16.63■□□□□ 0.25
CHD3-216ENST00000573936 A2ML1A8K2U0 1454 aa16.62■□□□□ 0.25
CHD3-216ENST00000573936 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.61■□□□□ 0.25
CHD3-216ENST00000573936 ZNF335Q9H4Z2 1342 aaPredicted RBP16.61■□□□□ 0.25
CHD3-216ENST00000573936 PZPP20742 1482 aa16.6■□□□□ 0.25
CHD3-216ENST00000573936 TNRQ92752 1358 aa16.59■□□□□ 0.25
CHD3-216ENST00000573936 POLR1AO95602 1720 aaPredicted RBP16.59■□□□□ 0.25
CHD3-216ENST00000573936 PRDM15P57071 1507 aaPredicted RBP16.57■□□□□ 0.24
CHD3-216ENST00000573936 SCAF1Q9H7N4 1312 aaKnown RBP16.57■□□□□ 0.24
CHD3-216ENST00000573936 ZC3H13Q5T200 1668 aaKnown RBP16.56■□□□□ 0.24
CHD3-216ENST00000573936 DEPDC5O75140 1603 aa16.56■□□□□ 0.24
CHD3-216ENST00000573936 MROH1Q8NDA8 1641 aa16.56■□□□□ 0.24
CHD3-216ENST00000573936 FBXO31Q5XUX0 539 aaPredicted RBP16.56■□□□□ 0.24
CHD3-216ENST00000573936 ABCC3O15438 1527 aa16.55■□□□□ 0.24
CHD3-216ENST00000573936 HFM1A2PYH4 1435 aa16.55■□□□□ 0.24
CHD3-216ENST00000573936 NAIPQ13075 1403 aa16.55■□□□□ 0.24
CHD3-216ENST00000573936 NEURL4Q96JN8 1562 aa16.55■□□□□ 0.24
CHD3-216ENST00000573936 LMTK2Q8IWU2 1503 aa16.52■□□□□ 0.24
CHD3-216ENST00000573936 ARHGAP31Q2M1Z3 1444 aa16.52■□□□□ 0.23
CHD3-216ENST00000573936 VWDEQ8N2E2 1590 aa16.51■□□□□ 0.23
CHD3-216ENST00000573936 ACIN1Q9UKV3 1341 aaKnown RBP16.51■□□□□ 0.23
CHD3-216ENST00000573936 NLRP1Q9C000 1473 aa16.51■□□□□ 0.23
CHD3-216ENST00000573936 TOM1O60784 492 aa16.51■□□□□ 0.23
CHD3-216ENST00000573936 PIP4K2BP78356 416 aa16.51■□□□□ 0.23
CHD3-216ENST00000573936 GCC2Q8IWJ2 1684 aa16.5■□□□□ 0.23
CHD3-216ENST00000573936 UNC13BO14795 1591 aa16.5■□□□□ 0.23
CHD3-216ENST00000573936 UGGT1Q9NYU2 1555 aa16.5■□□□□ 0.23
CHD3-216ENST00000573936 CEP152O94986 1710 aa16.5■□□□□ 0.23
CHD3-216ENST00000573936 NUP155O75694 1391 aa16.5■□□□□ 0.23
CHD3-216ENST00000573936 TRIM52Q96A61 297 aa16.46■□□□□ 0.23
CHD3-216ENST00000573936 ERVK-7P63135 1459 aa16.46■□□□□ 0.23
CHD3-216ENST00000573936 SETD5Q9C0A6 1442 aa16.45■□□□□ 0.22
CHD3-216ENST00000573936 HSPA1LP34931 641 aa16.45■□□□□ 0.22
CHD3-216ENST00000573936 ANKLE2Q86XL3 938 aa16.45■□□□□ 0.22
CHD3-216ENST00000573936 CPS1P31327 1500 aa16.45■□□□□ 0.22
CHD3-216ENST00000573936 IQGAP1P46940 1657 aa16.44■□□□□ 0.22
CHD3-216ENST00000573936 RPRD2Q5VT52 1461 aaKnown RBP16.44■□□□□ 0.22
CHD3-216ENST00000573936 THEMISQ8N1K5 641 aaPredicted RBP16.44■□□□□ 0.22
CHD3-216ENST00000573936 IQGAP3Q86VI3 1631 aa16.44■□□□□ 0.22
CHD3-216ENST00000573936 EFCAB6Q5THR3 1501 aa16.44■□□□□ 0.22
CHD3-216ENST00000573936 NPHP4O75161 1426 aaPredicted RBP16.43■□□□□ 0.22
CHD3-216ENST00000573936 TET3O43151 1660 aa16.43■□□□□ 0.22
CHD3-216ENST00000573936 CFAP65Q6ZU64 1925 aaKnown RBP16.43■□□□□ 0.22
CHD3-216ENST00000573936 PHF23Q9BUL5 403 aaPredicted RBP16.42■□□□□ 0.22
CHD3-216ENST00000573936 MED14O60244 1454 aa16.42■□□□□ 0.22
CHD3-216ENST00000573936 UBR1Q8IWV7 1749 aa16.4■□□□□ 0.22
CHD3-216ENST00000573936 HRCP23327 699 aa16.4■□□□□ 0.22
CHD3-216ENST00000573936 SLC52A1Q9NWF4 448 aa16.39■□□□□ 0.21
CHD3-216ENST00000573936 NOS1P29475 1434 aa16.38■□□□□ 0.21
CHD3-216ENST00000573936 SLC4A1APQ9BWU0 796 aaKnown RBP16.38■□□□□ 0.21
CHD3-216ENST00000573936 TRIM26Q12899 539 aaPredicted RBP16.37■□□□□ 0.21
CHD3-216ENST00000573936 RAB3GAP2Q9H2M9 1393 aa16.37■□□□□ 0.21
CHD3-216ENST00000573936 STRCP1A6NGW2 1772 aa16.36■□□□□ 0.21
CHD3-216ENST00000573936 SYNMO15061 1565 aa16.35■□□□□ 0.21
CHD3-216ENST00000573936 MED1Q15648 1581 aaPredicted RBP16.35■□□□□ 0.21
CHD3-216ENST00000573936 E9PCH4 1651 aa16.34■□□□□ 0.21
CHD3-216ENST00000573936 IDI1Q13907 227 aa16.34■□□□□ 0.21
CHD3-216ENST00000573936 SENP3Q9H4L4 574 aaPredicted RBP16.34■□□□□ 0.21
CHD3-216ENST00000573936 STAG3Q9UJ98 1225 aa16.34■□□□□ 0.21
CHD3-216ENST00000573936 SCAF11Q99590 1463 aaKnown RBP16.34■□□□□ 0.21
CHD3-216ENST00000573936 MPHOSPH9Q99550 1183 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms