RNA–Protein interactions for RNA: ENST00000573169.1

NUP88-206, Transcript of nucleoporin 88, humanhuman

TSL 1 (best)

Gene NUP88, Length 1,195 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-206ENST00000573169 PROM2Q8N271 834 aa10.03□□□□□ -0.8
NUP88-206ENST00000573169 SAMD9LQ8IVG5 1584 aa10.02□□□□□ -0.81
NUP88-206ENST00000573169 FBXO41Q8TF61 875 aa10.01□□□□□ -0.81
NUP88-206ENST00000573169 SYCP2Q9BX26 1530 aa10.01□□□□□ -0.81
NUP88-206ENST00000573169 KIDINS220Q9ULH0 1771 aa10.01□□□□□ -0.81
NUP88-206ENST00000573169 CFDP1Q9UEE9 299 aaPredicted RBP10□□□□□ -0.81
NUP88-206ENST00000573169 ZNF644Q9H582 1327 aaPredicted RBP10□□□□□ -0.81
NUP88-206ENST00000573169 REREQ9P2R6 1566 aa10□□□□□ -0.81
NUP88-206ENST00000573169 MTUS2Q5JR59 1369 aa10□□□□□ -0.81
NUP88-206ENST00000573169 CCNB3Q8WWL7 1395 aa10□□□□□ -0.81
NUP88-206ENST00000573169 PIP4P2Q8N4L2 257 aa9.99□□□□□ -0.81
NUP88-206ENST00000573169 SPAG9O60271 1321 aaKnown RBP9.99□□□□□ -0.81
NUP88-206ENST00000573169 ACIN1Q9UKV3 1341 aaKnown RBP9.99□□□□□ -0.81
NUP88-206ENST00000573169 CEP162Q5TB80 1403 aa9.99□□□□□ -0.81
NUP88-206ENST00000573169 AGLP35573 1532 aa9.98□□□□□ -0.81
NUP88-206ENST00000573169 SSUH2Q9Y2M2 353 aa9.98□□□□□ -0.81
NUP88-206ENST00000573169 PREX1Q8TCU6 1659 aa9.97□□□□□ -0.81
NUP88-206ENST00000573169 ESF1Q9H501 851 aaKnown RBP9.97□□□□□ -0.81
NUP88-206ENST00000573169 C3P01024 1663 aa9.96□□□□□ -0.81
NUP88-206ENST00000573169 UHRF1BP1Q6BDS2 1440 aa9.95□□□□□ -0.82
NUP88-206ENST00000573169 KIAA1107Q9UPP5 1409 aa9.95□□□□□ -0.82
NUP88-206ENST00000573169 ATP7AQ04656 1500 aa9.95□□□□□ -0.82
NUP88-206ENST00000573169 TIAM1Q13009 1591 aa9.95□□□□□ -0.82
NUP88-206ENST00000573169 SUPT6HQ7KZ85 1726 aaKnown RBP9.95□□□□□ -0.82
NUP88-206ENST00000573169 CERKQ8TCT0 537 aa9.94□□□□□ -0.82
NUP88-206ENST00000573169 STRCQ7RTU9 1775 aa9.93□□□□□ -0.82
NUP88-206ENST00000573169 INO80Q9ULG1 1556 aaPredicted RBP9.93□□□□□ -0.82
NUP88-206ENST00000573169 EHBP1L1Q8N3D4 1523 aa9.93□□□□□ -0.82
NUP88-206ENST00000573169 A2MP01023 1474 aa9.93□□□□□ -0.82
NUP88-206ENST00000573169 PLEKHH2Q8IVE3 1493 aa9.93□□□□□ -0.82
NUP88-206ENST00000573169 GGT6Q6P531 493 aa9.93□□□□□ -0.82
NUP88-206ENST00000573169 MBD5Q9P267 1494 aa9.92□□□□□ -0.82
NUP88-206ENST00000573169 CNTLNQ9NXG0 1405 aa9.91□□□□□ -0.82
NUP88-206ENST00000573169 ZMYM3Q14202 1370 aa9.91□□□□□ -0.82
NUP88-206ENST00000573169 PLXNC1O60486 1568 aa9.91□□□□□ -0.82
NUP88-206ENST00000573169 NCOA2Q15596 1464 aa9.91□□□□□ -0.82
NUP88-206ENST00000573169 CLTCQ00610 1675 aaKnown RBP9.9□□□□□ -0.82
NUP88-206ENST00000573169 EVX2Q03828 476 aa9.9□□□□□ -0.82
NUP88-206ENST00000573169 STAG3Q9UJ98 1225 aa9.9□□□□□ -0.82
NUP88-206ENST00000573169 SETD1BQ9UPS6 1966 aaKnown RBP9.89□□□□□ -0.83
NUP88-206ENST00000573169 AMER1Q5JTC6 1135 aaPredicted RBP9.89□□□□□ -0.83
NUP88-206ENST00000573169 NCKAP5LQ9HCH0 1330 aa9.88□□□□□ -0.83
NUP88-206ENST00000573169 MROH2AA6NES4 1674 aa9.88□□□□□ -0.83
NUP88-206ENST00000573169 CAMSAP2Q08AD1 1489 aa9.88□□□□□ -0.83
NUP88-206ENST00000573169 CENPBP07199 599 aaPredicted RBP9.88□□□□□ -0.83
NUP88-206ENST00000573169 NEUROD1Q13562 356 aa9.87□□□□□ -0.83
NUP88-206ENST00000573169 KANK4Q5T7N3 995 aaPredicted RBP9.87□□□□□ -0.83
NUP88-206ENST00000573169 LHX8Q68G74 356 aa9.87□□□□□ -0.83
NUP88-206ENST00000573169 PTPRKQ15262 1439 aa9.87□□□□□ -0.83
NUP88-206ENST00000573169 NCOA1Q15788 1441 aa9.87□□□□□ -0.83
NUP88-206ENST00000573169 DHX29Q7Z478 1369 aaKnown RBP9.87□□□□□ -0.83
NUP88-206ENST00000573169 ADGBQ8N7X0 1667 aa9.87□□□□□ -0.83
NUP88-206ENST00000573169 CAMSAP1Q5T5Y3 1602 aa9.86□□□□□ -0.83
NUP88-206ENST00000573169 RTEL1-TNFRSF6BF6WH68 1400 aa9.86□□□□□ -0.83
NUP88-206ENST00000573169 PTPRTO14522 1441 aa9.86□□□□□ -0.83
NUP88-206ENST00000573169 KIF3BO15066 747 aa9.86□□□□□ -0.83
NUP88-206ENST00000573169 VASPP50552 380 aaPredicted RBP9.86□□□□□ -0.83
NUP88-206ENST00000573169 NPATQ14207 1427 aa9.86□□□□□ -0.83
NUP88-206ENST00000573169 VPS8Q8N3P4 1428 aa9.86□□□□□ -0.83
NUP88-206ENST00000573169 AKT1S1Q96B36 256 aa9.86□□□□□ -0.83
NUP88-206ENST00000573169 CCDC141Q6ZP82 1450 aa9.85□□□□□ -0.83
NUP88-206ENST00000573169 LRRC9Q6ZRR7 1453 aa9.85□□□□□ -0.83
NUP88-206ENST00000573169 FBXO31Q5XUX0 539 aaPredicted RBP9.85□□□□□ -0.83
NUP88-206ENST00000573169 RTN4Q9NQC3 1192 aaKnown RBP9.84□□□□□ -0.83
NUP88-206ENST00000573169 MYO3AQ8NEV4 1616 aa9.84□□□□□ -0.83
NUP88-206ENST00000573169 DIEXFQ68CQ4 756 aaKnown RBP9.83□□□□□ -0.84
NUP88-206ENST00000573169 LTBP4Q8N2S1 1624 aa9.82□□□□□ -0.84
NUP88-206ENST00000573169 TSPY4P0CV99 314 aa9.82□□□□□ -0.84
NUP88-206ENST00000573169 TSPY10P0CW01 314 aa9.82□□□□□ -0.84
NUP88-206ENST00000573169 RSPH4AQ5TD94 716 aa9.82□□□□□ -0.84
NUP88-206ENST00000573169 CCER1Q8TC90 406 aaPredicted RBP9.82□□□□□ -0.84
NUP88-206ENST00000573169 CEP170BQ9Y4F5 1589 aaPredicted RBP9.82□□□□□ -0.84
NUP88-206ENST00000573169 ZNF335Q9H4Z2 1342 aaPredicted RBP9.82□□□□□ -0.84
NUP88-206ENST00000573169 ARHGEF5Q12774 1597 aa9.81□□□□□ -0.84
NUP88-206ENST00000573169 WASHC2CQ9Y4E1 1318 aa9.81□□□□□ -0.84
NUP88-206ENST00000573169 ZNF142P52746 1687 aaPredicted RBP9.8□□□□□ -0.84
NUP88-206ENST00000573169 TNRQ92752 1358 aa9.79□□□□□ -0.84
NUP88-206ENST00000573169 PLEKHG5O94827 1062 aa9.79□□□□□ -0.84
NUP88-206ENST00000573169 A2ML1A8K2U0 1454 aa9.79□□□□□ -0.84
NUP88-206ENST00000573169 TCOF1Q13428 1488 aaKnown RBP9.79□□□□□ -0.84
NUP88-206ENST00000573169 DNMT1P26358 1616 aaKnown RBP9.78□□□□□ -0.84
NUP88-206ENST00000573169 KDM5DQ9BY66 1539 aa9.78□□□□□ -0.84
NUP88-206ENST00000573169 PKD2Q13563 968 aa9.78□□□□□ -0.84
NUP88-206ENST00000573169 SPDYE1Q8NFV5 336 aaPredicted RBP9.78□□□□□ -0.84
NUP88-206ENST00000573169 GTF3C3Q9Y5Q9 886 aa9.78□□□□□ -0.84
NUP88-206ENST00000573169 MYOM3Q5VTT5 1437 aa9.78□□□□□ -0.84
NUP88-206ENST00000573169 PZPP20742 1482 aa9.78□□□□□ -0.84
NUP88-206ENST00000573169 PLA2R1Q13018 1463 aa9.78□□□□□ -0.84
NUP88-206ENST00000573169 MAP3K1Q13233 1512 aa9.77□□□□□ -0.84
NUP88-206ENST00000573169 MAST1Q9Y2H9 1570 aa9.76□□□□□ -0.85
NUP88-206ENST00000573169 ZNF316A6NFI3 1004 aaPredicted RBP9.76□□□□□ -0.85
NUP88-206ENST00000573169 FXR2P51116 673 aaKnown RBP eCLIP9.76□□□□□ -0.85
NUP88-206ENST00000573169 REM2Q8IYK8 340 aaPredicted RBP9.76□□□□□ -0.85
NUP88-206ENST00000573169 PLCD3Q8N3E9 789 aa9.76□□□□□ -0.85
NUP88-206ENST00000573169 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.75□□□□□ -0.85
NUP88-206ENST00000573169 MIA2Q96PC5 1412 aa9.75□□□□□ -0.85
NUP88-206ENST00000573169 ABCC3O15438 1527 aa9.75□□□□□ -0.85
NUP88-206ENST00000573169 UBAP1LF5GYI3 381 aa9.74□□□□□ -0.85
NUP88-206ENST00000573169 RRP7BPQ9NSQ0 103 aa9.74□□□□□ -0.85
NUP88-206ENST00000573169 NEURL4Q96JN8 1562 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms