RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 EIF3AQ14152 1382 aaKnown RBP13.59□□□□□ -0.23
SMG6-213ENST00000573166 SLC52A1Q9NWF4 448 aa13.59□□□□□ -0.23
SMG6-213ENST00000573166 NUTM2FA1L443 756 aa13.59□□□□□ -0.23
SMG6-213ENST00000573166 CC2D1BQ5T0F9 858 aaKnown RBP13.58□□□□□ -0.24
SMG6-213ENST00000573166 ST20-MTHFSA0A0A6YYL1 179 aa13.58□□□□□ -0.24
SMG6-213ENST00000573166 KIAA1107Q9UPP5 1409 aa13.57□□□□□ -0.24
SMG6-213ENST00000573166 TXNDC2Q86VQ3 553 aa13.57□□□□□ -0.24
SMG6-213ENST00000573166 SOX12O15370 315 aa13.56□□□□□ -0.24
SMG6-213ENST00000573166 CFAP53Q96M91 514 aa13.56□□□□□ -0.24
SMG6-213ENST00000573166 STAC3Q96MF2 364 aa13.56□□□□□ -0.24
SMG6-213ENST00000573166 TRAPPC8Q9Y2L5 1435 aa13.56□□□□□ -0.24
SMG6-213ENST00000573166 DHX29Q7Z478 1369 aaKnown RBP13.56□□□□□ -0.24
SMG6-213ENST00000573166 HDGFL2Q7Z4V5 671 aaPredicted RBP13.55□□□□□ -0.24
SMG6-213ENST00000573166 THEMISQ8N1K5 641 aaPredicted RBP13.55□□□□□ -0.24
SMG6-213ENST00000573166 SYCP2Q9BX26 1530 aa13.55□□□□□ -0.24
SMG6-213ENST00000573166 ERCC6L2Q5T890 1561 aa13.55□□□□□ -0.24
SMG6-213ENST00000573166 CEBPAP49715 358 aaPredicted RBP13.54□□□□□ -0.24
SMG6-213ENST00000573166 ZNF518AQ6AHZ1 1483 aa13.54□□□□□ -0.24
SMG6-213ENST00000573166 PAK3O75914 559 aaPredicted RBP13.54□□□□□ -0.24
SMG6-213ENST00000573166 DNAJC5Q9H3Z4 198 aa13.53□□□□□ -0.24
SMG6-213ENST00000573166 CANXP27824 592 aaKnown RBP13.53□□□□□ -0.24
SMG6-213ENST00000573166 TMEM132EQ6IEE7 984 aa13.53□□□□□ -0.24
SMG6-213ENST00000573166 MINK1Q8N4C8 1332 aaPredicted RBP13.52□□□□□ -0.25
SMG6-213ENST00000573166 FBXO31Q5XUX0 539 aaPredicted RBP13.52□□□□□ -0.25
SMG6-213ENST00000573166 A0A0G2JS52 829 aa13.52□□□□□ -0.25
SMG6-213ENST00000573166 CFAP70Q5T0N1 1121 aa13.52□□□□□ -0.25
SMG6-213ENST00000573166 UHRF1BP1LA0JNW5 1464 aa13.52□□□□□ -0.25
SMG6-213ENST00000573166 ITSN2Q9NZM3 1697 aa13.51□□□□□ -0.25
SMG6-213ENST00000573166 NGDNQ8NEJ9 315 aaKnown RBP13.51□□□□□ -0.25
SMG6-213ENST00000573166 ABCA8O94911 1581 aa13.51□□□□□ -0.25
SMG6-213ENST00000573166 PTPRKQ15262 1439 aa13.5□□□□□ -0.25
SMG6-213ENST00000573166 MORC1Q86VD1 984 aa13.5□□□□□ -0.25
SMG6-213ENST00000573166 KDM5BQ9UGL1 1544 aa13.5□□□□□ -0.25
SMG6-213ENST00000573166 CFAP43Q8NDM7 1665 aa13.5□□□□□ -0.25
SMG6-213ENST00000573166 TERF2IPQ9NYB0 399 aa13.49□□□□□ -0.25
SMG6-213ENST00000573166 ABCC10Q5T3U5 1492 aa13.49□□□□□ -0.25
SMG6-213ENST00000573166 USP47Q96K76 1375 aa13.49□□□□□ -0.25
SMG6-213ENST00000573166 SENP3-EIF4A1A0A087X0R7 540 aa13.48□□□□□ -0.25
SMG6-213ENST00000573166 PPP6R1Q9UPN7 881 aa13.48□□□□□ -0.25
SMG6-213ENST00000573166 A2MP01023 1474 aa13.48□□□□□ -0.25
SMG6-213ENST00000573166 NUDCQ9Y266 331 aa13.48□□□□□ -0.25
SMG6-213ENST00000573166 ANKLE2Q86XL3 938 aa13.47□□□□□ -0.25
SMG6-213ENST00000573166 EVC2Q86UK5 1308 aa13.47□□□□□ -0.25
SMG6-213ENST00000573166 IDI1Q13907 227 aa13.46□□□□□ -0.25
SMG6-213ENST00000573166 SLC26A8Q96RN1 970 aa13.46□□□□□ -0.25
SMG6-213ENST00000573166 U2SURPO15042 1029 aaKnown RBP13.46□□□□□ -0.26
SMG6-213ENST00000573166 CENPJQ9HC77 1338 aaPredicted RBP13.45□□□□□ -0.26
SMG6-213ENST00000573166 MAGI3Q5TCQ9 1506 aa13.45□□□□□ -0.26
SMG6-213ENST00000573166 ERBINQ96RT1 1412 aa13.44□□□□□ -0.26
SMG6-213ENST00000573166 NBPF1Q3BBV0 1214 aa13.44□□□□□ -0.26
SMG6-213ENST00000573166 TCOF1Q13428 1488 aaKnown RBP13.43□□□□□ -0.26
SMG6-213ENST00000573166 NEUROD2Q15784 382 aa13.43□□□□□ -0.26
SMG6-213ENST00000573166 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.43□□□□□ -0.26
SMG6-213ENST00000573166 RPGRIP1LQ68CZ1 1315 aa13.42□□□□□ -0.26
SMG6-213ENST00000573166 DUOX2Q9NRD8 1548 aa13.42□□□□□ -0.26
SMG6-213ENST00000573166 ANKRD30BQ9BXX2 1392 aa13.41□□□□□ -0.26
SMG6-213ENST00000573166 NBPF8Q3BBV2 869 aa13.41□□□□□ -0.26
SMG6-213ENST00000573166 KTN1Q86UP2 1357 aaKnown RBP13.41□□□□□ -0.26
SMG6-213ENST00000573166 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.41□□□□□ -0.26
SMG6-213ENST00000573166 CLASP1Q7Z460 1538 aa13.41□□□□□ -0.26
SMG6-213ENST00000573166 MAPK8IP3Q9UPT6 1336 aa13.4□□□□□ -0.26
SMG6-213ENST00000573166 PROSER2Q86WR7 435 aaPredicted RBP13.4□□□□□ -0.26
SMG6-213ENST00000573166 PANK3Q9H999 370 aa13.4□□□□□ -0.26
SMG6-213ENST00000573166 RTEL1-TNFRSF6BF6WH68 1400 aa13.4□□□□□ -0.27
SMG6-213ENST00000573166 NEO1Q92859 1461 aa13.4□□□□□ -0.27
SMG6-213ENST00000573166 BCL11AQ9H165 835 aa13.38□□□□□ -0.27
SMG6-213ENST00000573166 ATF3P18847 181 aa13.38□□□□□ -0.27
SMG6-213ENST00000573166 PRAM1Q96QH2 718 aa13.38□□□□□ -0.27
SMG6-213ENST00000573166 ZCCHC11Q5TAX3 1644 aaKnown RBP13.38□□□□□ -0.27
SMG6-213ENST00000573166 ZBTB47Q9UFB7 747 aaPredicted RBP13.36□□□□□ -0.27
SMG6-213ENST00000573166 SHANK2Q9UPX8 1470 aa13.36□□□□□ -0.27
SMG6-213ENST00000573166 CABP2Q9NPB3 220 aa13.35□□□□□ -0.27
SMG6-213ENST00000573166 TNRQ92752 1358 aa13.35□□□□□ -0.27
SMG6-213ENST00000573166 RALBP1Q15311 655 aa13.35□□□□□ -0.27
SMG6-213ENST00000573166 CSB-PGBD3P0DP91 1061 aa13.34□□□□□ -0.27
SMG6-213ENST00000573166 ATP10AO60312 1499 aa13.34□□□□□ -0.27
SMG6-213ENST00000573166 PSME1Q06323 249 aa13.34□□□□□ -0.27
SMG6-213ENST00000573166 NPM2Q86SE8 214 aaKnown RBP13.34□□□□□ -0.27
SMG6-213ENST00000573166 ATP7AQ04656 1500 aa13.33□□□□□ -0.28
SMG6-213ENST00000573166 U2AF1L5P0DN76 240 aaPredicted RBP13.32□□□□□ -0.28
SMG6-213ENST00000573166 U2AF1Q01081 240 aaKnown RBP eCLIP13.32□□□□□ -0.28
SMG6-213ENST00000573166 ADGRF5Q8IZF2 1346 aa13.32□□□□□ -0.28
SMG6-213ENST00000573166 AMPHP49418 695 aa13.32□□□□□ -0.28
SMG6-213ENST00000573166 PNNQ9H307 717 aaKnown RBP13.32□□□□□ -0.28
SMG6-213ENST00000573166 LAS1LQ9Y4W2 734 aaKnown RBP13.32□□□□□ -0.28
SMG6-213ENST00000573166 DNMT1P26358 1616 aaKnown RBP13.32□□□□□ -0.28
SMG6-213ENST00000573166 CGNL1Q0VF96 1302 aa13.31□□□□□ -0.28
SMG6-213ENST00000573166 TSPOAP1O95153 1857 aa13.31□□□□□ -0.28
SMG6-213ENST00000573166 MYO5CQ9NQX4 1742 aa13.31□□□□□ -0.28
SMG6-213ENST00000573166 COG3Q96JB2 828 aa13.31□□□□□ -0.28
SMG6-213ENST00000573166 TTC37Q6PGP7 1564 aa13.31□□□□□ -0.28
SMG6-213ENST00000573166 MAPKBP1O60336 1514 aa13.3□□□□□ -0.28
SMG6-213ENST00000573166 ZMYM3Q14202 1370 aa13.3□□□□□ -0.28
SMG6-213ENST00000573166 KIF7Q2M1P5 1343 aa13.3□□□□□ -0.28
SMG6-213ENST00000573166 FKBP8Q14318 412 aa13.3□□□□□ -0.28
SMG6-213ENST00000573166 YEATS2Q9ULM3 1422 aa13.3□□□□□ -0.28
SMG6-213ENST00000573166 MBD5Q9P267 1494 aa13.29□□□□□ -0.28
SMG6-213ENST00000573166 CCER2I3L3R5 266 aa13.29□□□□□ -0.28
SMG6-213ENST00000573166 LTV1Q96GA3 475 aaPredicted RBP13.29□□□□□ -0.28
SMG6-213ENST00000573166 NLRP13Q86W25 1043 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms