RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 MAST1Q9Y2H9 1570 aa28.47■■■□□ 2.15
CHD3-214ENST00000572579 MYO3AQ8NEV4 1616 aa28.47■■■□□ 2.15
CHD3-214ENST00000572579 ABCC5O15440 1437 aa28.46■■■□□ 2.15
CHD3-214ENST00000572579 CEP170BQ9Y4F5 1589 aaPredicted RBP28.45■■■□□ 2.15
CHD3-214ENST00000572579 KDM5DQ9BY66 1539 aa28.45■■■□□ 2.15
CHD3-214ENST00000572579 LTBP4Q8N2S1 1624 aa28.45■■■□□ 2.14
CHD3-214ENST00000572579 APLP2Q06481 763 aa28.45■■■□□ 2.14
CHD3-214ENST00000572579 PZPP20742 1482 aa28.45■■■□□ 2.14
CHD3-214ENST00000572579 TNRQ92752 1358 aa28.44■■■□□ 2.14
CHD3-214ENST00000572579 TCOF1Q13428 1488 aaKnown RBP28.43■■■□□ 2.14
CHD3-214ENST00000572579 A2ML1A8K2U0 1454 aa28.42■■■□□ 2.14
CHD3-214ENST00000572579 PLA2R1Q13018 1463 aa28.42■■■□□ 2.14
CHD3-214ENST00000572579 PKD2Q13563 968 aa28.42■■■□□ 2.14
CHD3-214ENST00000572579 ZNF142P52746 1687 aaPredicted RBP28.4■■■□□ 2.14
CHD3-214ENST00000572579 RRP7BPQ9NSQ0 103 aa28.39■■■□□ 2.14
CHD3-214ENST00000572579 ZNF335Q9H4Z2 1342 aaPredicted RBP28.39■■■□□ 2.13
CHD3-214ENST00000572579 FAM135AQ9P2D6 1515 aa28.38■■■□□ 2.13
CHD3-214ENST00000572579 FGD6Q6ZV73 1430 aa28.37■■■□□ 2.13
CHD3-214ENST00000572579 DNMT1P26358 1616 aaKnown RBP28.36■■■□□ 2.13
CHD3-214ENST00000572579 ABCC3O15438 1527 aa28.36■■■□□ 2.13
CHD3-214ENST00000572579 RNF17Q9BXT8 1623 aaKnown RBP28.35■■■□□ 2.13
CHD3-214ENST00000572579 MROH1Q8NDA8 1641 aa28.34■■■□□ 2.13
CHD3-214ENST00000572579 PTPN23Q9H3S7 1636 aa28.34■■■□□ 2.13
CHD3-214ENST00000572579 KIF15Q9NS87 1388 aa28.34■■■□□ 2.13
CHD3-214ENST00000572579 DAPK1P53355 1430 aa28.33■■■□□ 2.13
CHD3-214ENST00000572579 CHIC2Q9UKJ5 165 aa28.31■■■□□ 2.12
CHD3-214ENST00000572579 DUOX2Q9NRD8 1548 aa28.31■■■□□ 2.12
CHD3-214ENST00000572579 SHANK2Q9UPX8 1470 aa28.3■■■□□ 2.12
CHD3-214ENST00000572579 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.29■■■□□ 2.12
CHD3-214ENST00000572579 EIF2AK4Q9P2K8 1649 aaKnown RBP28.26■■■□□ 2.11
CHD3-214ENST00000572579 NLRP1Q9C000 1473 aa28.26■■■□□ 2.11
CHD3-214ENST00000572579 THEMISQ8N1K5 641 aaPredicted RBP28.25■■■□□ 2.11
CHD3-214ENST00000572579 ERVK-7P63135 1459 aa28.24■■■□□ 2.11
CHD3-214ENST00000572579 ERBINQ96RT1 1412 aa28.23■■■□□ 2.11
CHD3-214ENST00000572579 SPATA31D1Q6ZQQ2 1576 aa28.23■■■□□ 2.11
CHD3-214ENST00000572579 NEURL4Q96JN8 1562 aa28.23■■■□□ 2.11
CHD3-214ENST00000572579 ANKLE2Q86XL3 938 aa28.22■■■□□ 2.11
CHD3-214ENST00000572579 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.22■■■□□ 2.118e-6■■■□□ 19
CHD3-214ENST00000572579 CROCC2H7BZ55 1655 aa28.2■■■□□ 2.11
CHD3-214ENST00000572579 UGGT1Q9NYU2 1555 aa28.2■■■□□ 2.1
CHD3-214ENST00000572579 IQSEC2Q5JU85 1478 aa28.19■■■□□ 2.1
CHD3-214ENST00000572579 ANKRD30AQ9BXX3 1397 aa28.18■■■□□ 2.1
CHD3-214ENST00000572579 FAM50AQ14320 339 aaKnown RBP28.17■■■□□ 2.1
CHD3-214ENST00000572579 PRDM15P57071 1507 aaPredicted RBP28.17■■■□□ 2.1
CHD3-214ENST00000572579 ARHGAP31Q2M1Z3 1444 aa28.17■■■□□ 2.1
CHD3-214ENST00000572579 ZC3H13Q5T200 1668 aaKnown RBP28.16■■■□□ 2.1
CHD3-214ENST00000572579 CEP152O94986 1710 aa28.14■■■□□ 2.1
CHD3-214ENST00000572579 MED14O60244 1454 aa28.13■■■□□ 2.09
CHD3-214ENST00000572579 NPHP4O75161 1426 aaPredicted RBP28.11■■■□□ 2.09
CHD3-214ENST00000572579 ADGRL2O95490 1459 aa28.1■■■□□ 2.09
CHD3-214ENST00000572579 UBAP1LF5GYI3 381 aa28.09■■■□□ 2.09
CHD3-214ENST00000572579 LTKP29376 864 aa28.09■■■□□ 2.09
CHD3-214ENST00000572579 DEPDC5O75140 1603 aa28.08■■■□□ 2.09
CHD3-214ENST00000572579 VWDEQ8N2E2 1590 aa28.07■■■□□ 2.08
CHD3-214ENST00000572579 PPARGC1BQ86YN6 1023 aaKnown RBP28.06■■■□□ 2.08
CHD3-214ENST00000572579 POLR1AO95602 1720 aaPredicted RBP28.05■■■□□ 2.08
CHD3-214ENST00000572579 IDI1Q13907 227 aa28.05■■■□□ 2.08
CHD3-214ENST00000572579 CFAP65Q6ZU64 1925 aaKnown RBP28.05■■■□□ 2.08
CHD3-214ENST00000572579 LMTK2Q8IWU2 1503 aa28.04■■■□□ 2.08
CHD3-214ENST00000572579 KANK1Q14678 1352 aa28.04■■■□□ 2.08
CHD3-214ENST00000572579 ARHGAP23Q9P227 1491 aa28.01■■■□□ 2.07
CHD3-214ENST00000572579 ANKRD50Q9ULJ7 1429 aa28.01■■■□□ 2.07
CHD3-214ENST00000572579 TXNDC2Q86VQ3 553 aa28■■■□□ 2.07
CHD3-214ENST00000572579 UBR1Q8IWV7 1749 aa27.99■■■□□ 2.07
CHD3-214ENST00000572579 CPS1P31327 1500 aa27.97■■■□□ 2.07
CHD3-214ENST00000572579 NOS1P29475 1434 aa27.97■■■□□ 2.07
CHD3-214ENST00000572579 SLIT1O75093 1534 aa27.96■■■□□ 2.07
CHD3-214ENST00000572579 SCAF11Q99590 1463 aaKnown RBP27.95■■■□□ 2.07
CHD3-214ENST00000572579 TMEM2Q9UHN6 1383 aa27.95■■■□□ 2.06
CHD3-214ENST00000572579 IQGAP1P46940 1657 aa27.94■■■□□ 2.06
CHD3-214ENST00000572579 SYNMO15061 1565 aa27.92■■■□□ 2.06
CHD3-214ENST00000572579 PIK3C2BO00750 1634 aa27.91■■■□□ 2.06
CHD3-214ENST00000572579 EFCAB6Q5THR3 1501 aa27.91■■■□□ 2.06
CHD3-214ENST00000572579 ROCK1Q13464 1354 aa27.89■■■□□ 2.06
CHD3-214ENST00000572579 DISP3Q9P2K9 1392 aa27.89■■■□□ 2.06
CHD3-214ENST00000572579 STRCP1A6NGW2 1772 aa27.89■■■□□ 2.06
CHD3-214ENST00000572579 PIP4K2BP78356 416 aa27.89■■■□□ 2.06
CHD3-214ENST00000572579 ILDR2Q71H61 639 aa27.89■■■□□ 2.06
CHD3-214ENST00000572579 LRRC7Q96NW7 1537 aa27.88■■■□□ 2.05
CHD3-214ENST00000572579 STAG3Q9UJ98 1225 aa27.88■■■□□ 2.05
CHD3-214ENST00000572579 EID1Q9Y6B2 187 aa27.88■■■□□ 2.05
CHD3-214ENST00000572579 ALKQ9UM73 1620 aa27.88■■■□□ 2.05
CHD3-214ENST00000572579 TOM1O60784 492 aa27.87■■■□□ 2.05
CHD3-214ENST00000572579 ITGAEP38570 1179 aa27.87■■■□□ 2.05
CHD3-214ENST00000572579 HSPA1LP34931 641 aa27.86■■■□□ 2.05
CHD3-214ENST00000572579 SLC52A1Q9NWF4 448 aa27.86■■■□□ 2.05
CHD3-214ENST00000572579 SCAF1Q9H7N4 1312 aaKnown RBP27.82■■■□□ 2.04
CHD3-214ENST00000572579 RPRD2Q5VT52 1461 aaKnown RBP27.81■■■□□ 2.04
CHD3-214ENST00000572579 SLC26A8Q96RN1 970 aa27.79■■■□□ 2.04
CHD3-214ENST00000572579 TET3O43151 1660 aa27.77■■■□□ 2.04
CHD3-214ENST00000572579 UNC13BO14795 1591 aa27.77■■■□□ 2.04
CHD3-214ENST00000572579 ADGRB3O60242 1522 aa27.75■■■□□ 2.03
CHD3-214ENST00000572579 KDM5AP29375 1690 aaKnown RBP27.75■■■□□ 2.03
CHD3-214ENST00000572579 NUP155O75694 1391 aa27.74■■■□□ 2.03
CHD3-214ENST00000572579 SENP3Q9H4L4 574 aaPredicted RBP27.74■■■□□ 2.03
CHD3-214ENST00000572579 ZFYVE9O95405 1425 aa27.73■■■□□ 2.03
CHD3-214ENST00000572579 KCNA6P17658 529 aa27.72■■■□□ 2.03
CHD3-214ENST00000572579 RBM33Q96EV2 1170 aaKnown RBP27.7■■■□□ 2.02
CHD3-214ENST00000572579 RRBP1Q9P2E9 1410 aaKnown RBP27.68■■■□□ 2.02
CHD3-214ENST00000572579 RIMS2Q9UQ26 1411 aa27.67■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms