RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 PPP6R1Q9UPN7 881 aa10.78□□□□□ -0.68
VPS53-213ENST00000572334 MAST1Q9Y2H9 1570 aa10.77□□□□□ -0.68
VPS53-213ENST00000572334 KANK4Q5T7N3 995 aaPredicted RBP10.77□□□□□ -0.69
VPS53-213ENST00000572334 MAP3K1Q13233 1512 aa10.77□□□□□ -0.69
VPS53-213ENST00000572334 NCKAP5LQ9HCH0 1330 aa10.77□□□□□ -0.69
VPS53-213ENST00000572334 RNF17Q9BXT8 1623 aaKnown RBP10.76□□□□□ -0.69
VPS53-213ENST00000572334 A2ML1A8K2U0 1454 aa10.76□□□□□ -0.69
VPS53-213ENST00000572334 POLR1AO95602 1720 aaPredicted RBP10.76□□□□□ -0.69
VPS53-213ENST00000572334 KDM5DQ9BY66 1539 aa10.76□□□□□ -0.69
VPS53-213ENST00000572334 FAM135AQ9P2D6 1515 aa10.76□□□□□ -0.69
VPS53-213ENST00000572334 MROH1Q8NDA8 1641 aa10.76□□□□□ -0.69
VPS53-213ENST00000572334 PZPP20742 1482 aa10.75□□□□□ -0.69
VPS53-213ENST00000572334 IQSEC2Q5JU85 1478 aa10.75□□□□□ -0.69
VPS53-213ENST00000572334 NEURL4Q96JN8 1562 aa10.75□□□□□ -0.69
VPS53-213ENST00000572334 KIF3BO15066 747 aa10.75□□□□□ -0.69
VPS53-213ENST00000572334 RSPH4AQ5TD94 716 aa10.75□□□□□ -0.69
VPS53-213ENST00000572334 CFAP65Q6ZU64 1925 aaKnown RBP10.75□□□□□ -0.69
VPS53-213ENST00000572334 FBXO31Q5XUX0 539 aaPredicted RBP10.74□□□□□ -0.69
VPS53-213ENST00000572334 ZNF335Q9H4Z2 1342 aaPredicted RBP10.74□□□□□ -0.69
VPS53-213ENST00000572334 PKD2Q13563 968 aa10.73□□□□□ -0.69
VPS53-213ENST00000572334 EIF2AK4Q9P2K8 1649 aaKnown RBP10.73□□□□□ -0.69
VPS53-213ENST00000572334 CEP152O94986 1710 aa10.72□□□□□ -0.69
VPS53-213ENST00000572334 MYOM3Q5VTT5 1437 aa10.72□□□□□ -0.69
VPS53-213ENST00000572334 ABCC3O15438 1527 aa10.72□□□□□ -0.69
VPS53-213ENST00000572334 CROCC2H7BZ55 1655 aa10.72□□□□□ -0.69
VPS53-213ENST00000572334 ZC3H13Q5T200 1668 aaKnown RBP10.72□□□□□ -0.69
VPS53-213ENST00000572334 TNRQ92752 1358 aa10.71□□□□□ -0.69
VPS53-213ENST00000572334 MIA2Q96PC5 1412 aa10.71□□□□□ -0.69
VPS53-213ENST00000572334 SPATA31D1Q6ZQQ2 1576 aa10.7□□□□□ -0.7
VPS53-213ENST00000572334 WASHC2CQ9Y4E1 1318 aa10.69□□□□□ -0.7
VPS53-213ENST00000572334 TSPY4P0CV99 314 aa10.69□□□□□ -0.7
VPS53-213ENST00000572334 TSPY10P0CW01 314 aa10.69□□□□□ -0.7
VPS53-213ENST00000572334 STRCP1A6NGW2 1772 aa10.69□□□□□ -0.7
VPS53-213ENST00000572334 DEPDC5O75140 1603 aa10.68□□□□□ -0.7
VPS53-213ENST00000572334 PTPN23Q9H3S7 1636 aa10.68□□□□□ -0.7
VPS53-213ENST00000572334 VWDEQ8N2E2 1590 aa10.68□□□□□ -0.7
VPS53-213ENST00000572334 NLRP1Q9C000 1473 aa10.68□□□□□ -0.7
VPS53-213ENST00000572334 ABCC5O15440 1437 aa10.67□□□□□ -0.7
VPS53-213ENST00000572334 UGGT1Q9NYU2 1555 aa10.67□□□□□ -0.7
VPS53-213ENST00000572334 DUOX2Q9NRD8 1548 aa10.67□□□□□ -0.7
VPS53-213ENST00000572334 MED14O60244 1454 aa10.67□□□□□ -0.7
VPS53-213ENST00000572334 ERVK-7P63135 1459 aa10.67□□□□□ -0.7
VPS53-213ENST00000572334 UBR1Q8IWV7 1749 aa10.67□□□□□ -0.7
VPS53-213ENST00000572334 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.66□□□□□ -0.7
VPS53-213ENST00000572334 PRDM15P57071 1507 aaPredicted RBP10.66□□□□□ -0.7
VPS53-213ENST00000572334 SHANK2Q9UPX8 1470 aa10.66□□□□□ -0.7
VPS53-213ENST00000572334 ALKQ9UM73 1620 aa10.66□□□□□ -0.7
VPS53-213ENST00000572334 ILDR2Q71H61 639 aa10.65□□□□□ -0.7
VPS53-213ENST00000572334 IQGAP1P46940 1657 aa10.65□□□□□ -0.7
VPS53-213ENST00000572334 DAPK1P53355 1430 aa10.63□□□□□ -0.71
VPS53-213ENST00000572334 KIF15Q9NS87 1388 aa10.63□□□□□ -0.71
VPS53-213ENST00000572334 CPS1P31327 1500 aa10.63□□□□□ -0.71
VPS53-213ENST00000572334 NPHP4O75161 1426 aaPredicted RBP10.62□□□□□ -0.71
VPS53-213ENST00000572334 FGD6Q6ZV73 1430 aa10.62□□□□□ -0.71
VPS53-213ENST00000572334 ERBINQ96RT1 1412 aa10.62□□□□□ -0.71
VPS53-213ENST00000572334 THEMISQ8N1K5 641 aaPredicted RBP10.62□□□□□ -0.71
VPS53-213ENST00000572334 DISP3Q9P2K9 1392 aa10.62□□□□□ -0.71
VPS53-213ENST00000572334 XIRP1Q702N8 1843 aaKnown RBP10.61□□□□□ -0.71
VPS53-213ENST00000572334 ARHGAP31Q2M1Z3 1444 aa10.61□□□□□ -0.71
VPS53-213ENST00000572334 UBAP1LF5GYI3 381 aa10.61□□□□□ -0.71
VPS53-213ENST00000572334 ANKLE2Q86XL3 938 aa10.61□□□□□ -0.71
VPS53-213ENST00000572334 ARHGAP23Q9P227 1491 aa10.61□□□□□ -0.71
VPS53-213ENST00000572334 PIK3C2BO00750 1634 aa10.6□□□□□ -0.71
VPS53-213ENST00000572334 SLIT1O75093 1534 aa10.59□□□□□ -0.71
VPS53-213ENST00000572334 RRP7BPQ9NSQ0 103 aa10.59□□□□□ -0.71
VPS53-213ENST00000572334 LMTK2Q8IWU2 1503 aa10.58□□□□□ -0.72
VPS53-213ENST00000572334 SYNMO15061 1565 aa10.58□□□□□ -0.72
VPS53-213ENST00000572334 LRRC7Q96NW7 1537 aa10.58□□□□□ -0.72
VPS53-213ENST00000572334 KDM5AP29375 1690 aaKnown RBP10.57□□□□□ -0.72
VPS53-213ENST00000572334 ADGRL2O95490 1459 aa10.57□□□□□ -0.72
VPS53-213ENST00000572334 LTKP29376 864 aa10.57□□□□□ -0.72
VPS53-213ENST00000572334 MYO5BQ9ULV0 1848 aa10.56□□□□□ -0.72
VPS53-213ENST00000572334 SCAF11Q99590 1463 aaKnown RBP10.56□□□□□ -0.72
VPS53-213ENST00000572334 EFCAB6Q5THR3 1501 aa10.55□□□□□ -0.72
VPS53-213ENST00000572334 HSPA1LP34931 641 aa10.55□□□□□ -0.72
VPS53-213ENST00000572334 CHIC2Q9UKJ5 165 aa10.55□□□□□ -0.72
VPS53-213ENST00000572334 ANKRD30AQ9BXX3 1397 aa10.54□□□□□ -0.72
VPS53-213ENST00000572334 NOS1P29475 1434 aa10.54□□□□□ -0.72
VPS53-213ENST00000572334 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.54□□□□□ -0.72
VPS53-213ENST00000572334 SOCS7O14512 581 aa10.53□□□□□ -0.72
VPS53-213ENST00000572334 APLP2Q06481 763 aa10.53□□□□□ -0.72
VPS53-213ENST00000572334 TET3O43151 1660 aa10.53□□□□□ -0.72
VPS53-213ENST00000572334 MED1Q15648 1581 aaPredicted RBP10.52□□□□□ -0.72
VPS53-213ENST00000572334 TOM1O60784 492 aa10.52□□□□□ -0.73
VPS53-213ENST00000572334 PIP4K2BP78356 416 aa10.52□□□□□ -0.73
VPS53-213ENST00000572334 IDI1Q13907 227 aa10.52□□□□□ -0.73
VPS53-213ENST00000572334 TMEM2Q9UHN6 1383 aa10.52□□□□□ -0.73
VPS53-213ENST00000572334 TXNDC2Q86VQ3 553 aa10.51□□□□□ -0.73
VPS53-213ENST00000572334 ADGRB3O60242 1522 aa10.51□□□□□ -0.73
VPS53-213ENST00000572334 KANK1Q14678 1352 aa10.51□□□□□ -0.73
VPS53-213ENST00000572334 GCC2Q8IWJ2 1684 aa10.5□□□□□ -0.73
VPS53-213ENST00000572334 UNC13BO14795 1591 aa10.5□□□□□ -0.73
VPS53-213ENST00000572334 E9PCH4 1651 aa10.49□□□□□ -0.73
VPS53-213ENST00000572334 SCAF1Q9H7N4 1312 aaKnown RBP10.49□□□□□ -0.73
VPS53-213ENST00000572334 ANKRD50Q9ULJ7 1429 aa10.49□□□□□ -0.73
VPS53-213ENST00000572334 TMEM131LA2VDJ0 1609 aa10.48□□□□□ -0.73
VPS53-213ENST00000572334 RPRD2Q5VT52 1461 aaKnown RBP10.48□□□□□ -0.73
VPS53-213ENST00000572334 NWD1Q149M9 1564 aa10.48□□□□□ -0.73
VPS53-213ENST00000572334 CHD2O14647 1828 aaKnown RBP10.47□□□□□ -0.73
VPS53-213ENST00000572334 FAM50AQ14320 339 aaKnown RBP10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 135.1 ms