RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 POLR1AO95602 1720 aaPredicted RBP30.95■■■□□ 2.55
NUP88-203ENST00000572019 CAMSAP2Q08AD1 1489 aa30.95■■■□□ 2.55
NUP88-203ENST00000572019 UBAP1LF5GYI3 381 aa30.95■■■□□ 2.55
NUP88-203ENST00000572019 NCOA2Q15596 1464 aa30.95■■■□□ 2.54
NUP88-203ENST00000572019 CCDC141Q6ZP82 1450 aa30.93■■■□□ 2.54
NUP88-203ENST00000572019 KIF3BO15066 747 aa30.92■■■□□ 2.54
NUP88-203ENST00000572019 KDM5DQ9BY66 1539 aa30.9■■■□□ 2.54
NUP88-203ENST00000572019 TNRQ92752 1358 aa30.89■■■□□ 2.54
NUP88-203ENST00000572019 PZPP20742 1482 aa30.89■■■□□ 2.53
NUP88-203ENST00000572019 ARHGEF5Q12774 1597 aa30.82■■■□□ 2.52
NUP88-203ENST00000572019 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.79■■■□□ 2.52
NUP88-203ENST00000572019 FAM135AQ9P2D6 1515 aa30.79■■■□□ 2.52
NUP88-203ENST00000572019 WASHC2CQ9Y4E1 1318 aa30.78■■■□□ 2.52
NUP88-203ENST00000572019 VWDEQ8N2E2 1590 aa30.78■■■□□ 2.52
NUP88-203ENST00000572019 SHANK2Q9UPX8 1470 aa30.76■■■□□ 2.52
NUP88-203ENST00000572019 MIA2Q96PC5 1412 aa30.75■■■□□ 2.51
NUP88-203ENST00000572019 RNF17Q9BXT8 1623 aaKnown RBP30.75■■■□□ 2.51
NUP88-203ENST00000572019 CPS1P31327 1500 aa30.73■■■□□ 2.51
NUP88-203ENST00000572019 UGGT1Q9NYU2 1555 aa30.73■■■□□ 2.51
NUP88-203ENST00000572019 RSPH4AQ5TD94 716 aa30.72■■■□□ 2.51
NUP88-203ENST00000572019 ALKQ9UM73 1620 aa30.72■■■□□ 2.51
NUP88-203ENST00000572019 STRCP1A6NGW2 1772 aa30.71■■■□□ 2.51
NUP88-203ENST00000572019 CFAP65Q6ZU64 1925 aaKnown RBP30.71■■■□□ 2.51
NUP88-203ENST00000572019 HSPA1LP34931 641 aa30.71■■■□□ 2.51
NUP88-203ENST00000572019 ABCC3O15438 1527 aa30.71■■■□□ 2.51
NUP88-203ENST00000572019 LRRC9Q6ZRR7 1453 aa30.7■■■□□ 2.51
NUP88-203ENST00000572019 NLRP1Q9C000 1473 aa30.7■■■□□ 2.51
NUP88-203ENST00000572019 MROH1Q8NDA8 1641 aa30.7■■■□□ 2.51
NUP88-203ENST00000572019 PIP4K2BP78356 416 aa30.7■■■□□ 2.51
NUP88-203ENST00000572019 DEPDC5O75140 1603 aa30.69■■■□□ 2.5
NUP88-203ENST00000572019 MAST1Q9Y2H9 1570 aa30.69■■■□□ 2.5
NUP88-203ENST00000572019 SCAF1Q9H7N4 1312 aaKnown RBP30.69■■■□□ 2.5
NUP88-203ENST00000572019 CEP152O94986 1710 aa30.67■■■□□ 2.5
NUP88-203ENST00000572019 ANKLE2Q86XL3 938 aa30.67■■■□□ 2.5
NUP88-203ENST00000572019 MED14O60244 1454 aa30.67■■■□□ 2.5
NUP88-203ENST00000572019 IQGAP1P46940 1657 aa30.67■■■□□ 2.5
NUP88-203ENST00000572019 NPHP4O75161 1426 aaPredicted RBP30.66■■■□□ 2.5
NUP88-203ENST00000572019 MED1Q15648 1581 aaPredicted RBP30.66■■■□□ 2.5
NUP88-203ENST00000572019 ZC3H13Q5T200 1668 aaKnown RBP30.65■■■□□ 2.5
NUP88-203ENST00000572019 TSPY4P0CV99 314 aa30.65■■■□□ 2.5
NUP88-203ENST00000572019 TSPY10P0CW01 314 aa30.65■■■□□ 2.5
NUP88-203ENST00000572019 KANK4Q5T7N3 995 aaPredicted RBP30.64■■■□□ 2.5
NUP88-203ENST00000572019 THEMISQ8N1K5 641 aaPredicted RBP30.64■■■□□ 2.5
NUP88-203ENST00000572019 VPS8Q8N3P4 1428 aa30.64■■■□□ 2.49
NUP88-203ENST00000572019 EIF2AK4Q9P2K8 1649 aaKnown RBP30.62■■■□□ 2.49
NUP88-203ENST00000572019 ERVK-7P63135 1459 aa30.62■■■□□ 2.49
NUP88-203ENST00000572019 LOC105371045A0A1W2PR82 267 aa30.6■■■□□ 2.49
NUP88-203ENST00000572019 TOM1O60784 492 aa30.59■■■□□ 2.49
NUP88-203ENST00000572019 UBR1Q8IWV7 1749 aa30.58■■■□□ 2.49
NUP88-203ENST00000572019 MYOM3Q5VTT5 1437 aa30.53■■■□□ 2.48
NUP88-203ENST00000572019 LRRC7Q96NW7 1537 aa30.52■■■□□ 2.48
NUP88-203ENST00000572019 CROCC2H7BZ55 1655 aa30.49■■■□□ 2.47
NUP88-203ENST00000572019 MAP3K1Q13233 1512 aa30.48■■■□□ 2.47
NUP88-203ENST00000572019 DUOX2Q9NRD8 1548 aa30.48■■■□□ 2.47
NUP88-203ENST00000572019 SENP3Q9H4L4 574 aaPredicted RBP30.47■■■□□ 2.47
NUP88-203ENST00000572019 SYNMO15061 1565 aa30.46■■■□□ 2.47
NUP88-203ENST00000572019 XIRP1Q702N8 1843 aaKnown RBP30.46■■■□□ 2.47
NUP88-203ENST00000572019 PRDM15P57071 1507 aaPredicted RBP30.44■■■□□ 2.46
NUP88-203ENST00000572019 LTKP29376 864 aa30.43■■■□□ 2.46
NUP88-203ENST00000572019 SCAF11Q99590 1463 aaKnown RBP30.43■■■□□ 2.46
NUP88-203ENST00000572019 ARHGAP23Q9P227 1491 aa30.42■■■□□ 2.46
NUP88-203ENST00000572019 ABCC5O15440 1437 aa30.41■■■□□ 2.46
NUP88-203ENST00000572019 KIF15Q9NS87 1388 aa30.41■■■□□ 2.46
NUP88-203ENST00000572019 PIK3C2BO00750 1634 aa30.4■■■□□ 2.46
NUP88-203ENST00000572019 SLIT1O75093 1534 aa30.39■■■□□ 2.46
NUP88-203ENST00000572019 PTPN23Q9H3S7 1636 aa30.39■■■□□ 2.46
NUP88-203ENST00000572019 RRP7BPQ9NSQ0 103 aa30.37■■■□□ 2.45
NUP88-203ENST00000572019 ARHGAP31Q2M1Z3 1444 aa30.36■■■□□ 2.45
NUP88-203ENST00000572019 ERBINQ96RT1 1412 aa30.34■■■□□ 2.45
NUP88-203ENST00000572019 TXNDC2Q86VQ3 553 aa30.33■■■□□ 2.45
NUP88-203ENST00000572019 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.32■■■□□ 2.44
NUP88-203ENST00000572019 DAPK1P53355 1430 aa30.3■■■□□ 2.44
NUP88-203ENST00000572019 PHF23Q9BUL5 403 aaPredicted RBP30.26■■■□□ 2.43
NUP88-203ENST00000572019 TMEM2Q9UHN6 1383 aa30.25■■■□□ 2.43
NUP88-203ENST00000572019 FGD6Q6ZV73 1430 aa30.22■■■□□ 2.43
NUP88-203ENST00000572019 CHIC2Q9UKJ5 165 aa30.22■■■□□ 2.43
NUP88-203ENST00000572019 KDM5AP29375 1690 aaKnown RBP30.21■■■□□ 2.43
NUP88-203ENST00000572019 EFCAB6Q5THR3 1501 aa30.21■■■□□ 2.43
NUP88-203ENST00000572019 IDI1Q13907 227 aa30.2■■■□□ 2.43
NUP88-203ENST00000572019 LMTK2Q8IWU2 1503 aa30.2■■■□□ 2.42
NUP88-203ENST00000572019 RGS17Q9UGC6 210 aaPredicted RBP30.19■■■□□ 2.42
NUP88-203ENST00000572019 EID1Q9Y6B2 187 aa30.19■■■□□ 2.42
NUP88-203ENST00000572019 TET3O43151 1660 aa30.17■■■□□ 2.42
NUP88-203ENST00000572019 RBM33Q96EV2 1170 aaKnown RBP30.16■■■□□ 2.42
NUP88-203ENST00000572019 MYO5BQ9ULV0 1848 aa30.15■■■□□ 2.42
NUP88-203ENST00000572019 KANK1Q14678 1352 aa30.15■■■□□ 2.42
NUP88-203ENST00000572019 STAG3Q9UJ98 1225 aa30.14■■■□□ 2.42
NUP88-203ENST00000572019 TMEM94Q12767 1356 aa30.14■■■□□ 2.41
NUP88-203ENST00000572019 NOS1P29475 1434 aa30.13■■■□□ 2.41
NUP88-203ENST00000572019 SLC26A8Q96RN1 970 aa30.13■■■□□ 2.41
NUP88-203ENST00000572019 ANKRD30AQ9BXX3 1397 aa30.13■■■□□ 2.41
NUP88-203ENST00000572019 ADGRB3O60242 1522 aa30.12■■■□□ 2.41
NUP88-203ENST00000572019 ROBO1Q9Y6N7 1651 aa30.11■■■□□ 2.41
NUP88-203ENST00000572019 FAM135BQ49AJ0 1406 aa30.08■■■□□ 2.41
NUP88-203ENST00000572019 KCNA6P17658 529 aa30.07■■■□□ 2.4
NUP88-203ENST00000572019 NWD1Q149M9 1564 aa30.07■■■□□ 2.4
NUP88-203ENST00000572019 APLP2Q06481 763 aa30.06■■■□□ 2.4
NUP88-203ENST00000572019 ADGRL2O95490 1459 aa30.06■■■□□ 2.4
NUP88-203ENST00000572019 GCC2Q8IWJ2 1684 aa30.03■■■□□ 2.4
NUP88-203ENST00000572019 PROSER2Q86WR7 435 aaPredicted RBP30.02■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms