RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 SHANK2Q9UPX8 1470 aa9.85□□□□□ -0.83
VPS53-209ENST00000570771 PLXNC1O60486 1568 aa9.84□□□□□ -0.83
VPS53-209ENST00000570771 ADGBQ8N7X0 1667 aa9.83□□□□□ -0.84
VPS53-209ENST00000570771 CHIC2Q9UKJ5 165 aa9.83□□□□□ -0.84
VPS53-209ENST00000570771 SPAG9O60271 1321 aaKnown RBP9.82□□□□□ -0.84
VPS53-209ENST00000570771 ITGAEP38570 1179 aa9.82□□□□□ -0.84
VPS53-209ENST00000570771 REM2Q8IYK8 340 aaPredicted RBP9.82□□□□□ -0.84
VPS53-209ENST00000570771 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.82□□□□□ -0.84
VPS53-209ENST00000570771 ADGRL2O95490 1459 aa9.82□□□□□ -0.84
VPS53-209ENST00000570771 NCOA1Q15788 1441 aa9.81□□□□□ -0.84
VPS53-209ENST00000570771 MAGI2Q86UL8 1455 aa9.8□□□□□ -0.84
VPS53-209ENST00000570771 FXR2P51116 673 aaKnown RBP eCLIP9.8□□□□□ -0.84
VPS53-209ENST00000570771 MROH1Q8NDA8 1641 aa9.8□□□□□ -0.84
VPS53-209ENST00000570771 RTEL1-TNFRSF6BF6WH68 1400 aa9.8□□□□□ -0.84
VPS53-209ENST00000570771 KIF15Q9NS87 1388 aa9.79□□□□□ -0.84
VPS53-209ENST00000570771 REREQ9P2R6 1566 aa9.79□□□□□ -0.84
VPS53-209ENST00000570771 ATP10AO60312 1499 aa9.79□□□□□ -0.84
VPS53-209ENST00000570771 A2MP01023 1474 aa9.79□□□□□ -0.84
VPS53-209ENST00000570771 TRIM26Q12899 539 aaPredicted RBP9.78□□□□□ -0.84
VPS53-209ENST00000570771 RRP7BPQ9NSQ0 103 aa9.78□□□□□ -0.84
VPS53-209ENST00000570771 NAIPQ13075 1403 aa9.78□□□□□ -0.84
VPS53-209ENST00000570771 EVX2Q03828 476 aa9.77□□□□□ -0.85
VPS53-209ENST00000570771 DHX29Q7Z478 1369 aaKnown RBP9.75□□□□□ -0.85
VPS53-209ENST00000570771 AGLP35573 1532 aa9.75□□□□□ -0.85
VPS53-209ENST00000570771 ROCK1Q13464 1354 aa9.75□□□□□ -0.85
VPS53-209ENST00000570771 HFM1A2PYH4 1435 aa9.74□□□□□ -0.85
VPS53-209ENST00000570771 DUOX2Q9NRD8 1548 aa9.74□□□□□ -0.85
VPS53-209ENST00000570771 PITPNM1O00562 1244 aa9.74□□□□□ -0.85
VPS53-209ENST00000570771 KDM4FA0A1W2PPD8 638 aa9.73□□□□□ -0.85
VPS53-209ENST00000570771 MADDQ8WXG6 1647 aa9.73□□□□□ -0.85
VPS53-209ENST00000570771 RNF17Q9BXT8 1623 aaKnown RBP9.73□□□□□ -0.85
VPS53-209ENST00000570771 GCC2Q8IWJ2 1684 aa9.73□□□□□ -0.85
VPS53-209ENST00000570771 ANKRD30AQ9BXX3 1397 aa9.73□□□□□ -0.85
VPS53-209ENST00000570771 BCORL1Q5H9F3 1711 aa9.73□□□□□ -0.85
VPS53-209ENST00000570771 ADAMTSL3P82987 1691 aa9.72□□□□□ -0.85
VPS53-209ENST00000570771 TSPY4P0CV99 314 aa9.72□□□□□ -0.85
VPS53-209ENST00000570771 TSPY10P0CW01 314 aa9.72□□□□□ -0.85
VPS53-209ENST00000570771 MLECQ14165 292 aa9.72□□□□□ -0.85
VPS53-209ENST00000570771 RSPH4AQ5TD94 716 aa9.72□□□□□ -0.85
VPS53-209ENST00000570771 MYT1LQ9UL68 1186 aa9.72□□□□□ -0.85
VPS53-209ENST00000570771 ERBINQ96RT1 1412 aa9.72□□□□□ -0.85
VPS53-209ENST00000570771 ANKRD50Q9ULJ7 1429 aa9.72□□□□□ -0.85
VPS53-209ENST00000570771 DEPDC5O75140 1603 aa9.71□□□□□ -0.85
VPS53-209ENST00000570771 PRDM15P57071 1507 aaPredicted RBP9.71□□□□□ -0.86
VPS53-209ENST00000570771 VWDEQ8N2E2 1590 aa9.71□□□□□ -0.86
VPS53-209ENST00000570771 ABCC3O15438 1527 aa9.7□□□□□ -0.86
VPS53-209ENST00000570771 UNC13BO14795 1591 aa9.7□□□□□ -0.86
VPS53-209ENST00000570771 EIF2AK4Q9P2K8 1649 aaKnown RBP9.7□□□□□ -0.86
VPS53-209ENST00000570771 KIF3BO15066 747 aa9.69□□□□□ -0.86
VPS53-209ENST00000570771 PZPP20742 1482 aa9.69□□□□□ -0.86
VPS53-209ENST00000570771 RAB3GAP2Q9H2M9 1393 aa9.68□□□□□ -0.86
VPS53-209ENST00000570771 ARID4BQ4LE39 1312 aaPredicted RBP9.68□□□□□ -0.86
VPS53-209ENST00000570771 LHX8Q68G74 356 aa9.67□□□□□ -0.86
VPS53-209ENST00000570771 ZBTB12Q9Y330 459 aaPredicted RBP9.67□□□□□ -0.86
VPS53-209ENST00000570771 RIMS1Q86UR5 1692 aaKnown RBP9.67□□□□□ -0.86
VPS53-209ENST00000570771 KDM5DQ9BY66 1539 aa9.66□□□□□ -0.86
VPS53-209ENST00000570771 CEP152O94986 1710 aa9.66□□□□□ -0.86
VPS53-209ENST00000570771 GGT6Q6P531 493 aa9.66□□□□□ -0.86
VPS53-209ENST00000570771 PCGF6Q9BYE7 350 aa9.66□□□□□ -0.86
VPS53-209ENST00000570771 SETD5Q9C0A6 1442 aa9.65□□□□□ -0.86
VPS53-209ENST00000570771 CLTCQ00610 1675 aaKnown RBP9.65□□□□□ -0.86
VPS53-209ENST00000570771 CEBPAP49715 358 aaPredicted RBP9.65□□□□□ -0.86
VPS53-209ENST00000570771 FER1L4A9Z1Z3 1794 aa9.65□□□□□ -0.87
VPS53-209ENST00000570771 LMTK2Q8IWU2 1503 aa9.64□□□□□ -0.87
VPS53-209ENST00000570771 FAM135AQ9P2D6 1515 aa9.64□□□□□ -0.87
VPS53-209ENST00000570771 PTPRMP28827 1452 aa9.64□□□□□ -0.87
VPS53-209ENST00000570771 NPATQ14207 1427 aa9.64□□□□□ -0.87
VPS53-209ENST00000570771 IQGAP3Q86VI3 1631 aa9.64□□□□□ -0.87
VPS53-209ENST00000570771 EFCAB6Q5THR3 1501 aa9.63□□□□□ -0.87
VPS53-209ENST00000570771 CAMSAP1Q5T5Y3 1602 aa9.63□□□□□ -0.87
VPS53-209ENST00000570771 C3P01024 1663 aa9.62□□□□□ -0.87
VPS53-209ENST00000570771 PLA2R1Q13018 1463 aa9.62□□□□□ -0.87
VPS53-209ENST00000570771 MYCNP04198 464 aaPredicted RBP9.62□□□□□ -0.87
VPS53-209ENST00000570771 FBXO31Q5XUX0 539 aaPredicted RBP9.62□□□□□ -0.87
VPS53-209ENST00000570771 UGGT1Q9NYU2 1555 aa9.62□□□□□ -0.87
VPS53-209ENST00000570771 SYNMO15061 1565 aa9.61□□□□□ -0.87
VPS53-209ENST00000570771 NUP155O75694 1391 aa9.61□□□□□ -0.87
VPS53-209ENST00000570771 E9PCH4 1651 aa9.6□□□□□ -0.87
VPS53-209ENST00000570771 ZMYM3Q14202 1370 aa9.6□□□□□ -0.87
VPS53-209ENST00000570771 ERVK-7P63135 1459 aa9.59□□□□□ -0.87
VPS53-209ENST00000570771 TET3O43151 1660 aa9.59□□□□□ -0.87
VPS53-209ENST00000570771 ZC3H13Q5T200 1668 aaKnown RBP9.59□□□□□ -0.87
VPS53-209ENST00000570771 PLSCR2Q9NRY7 297 aa9.59□□□□□ -0.87
VPS53-209ENST00000570771 MROH2AA6NES4 1674 aa9.58□□□□□ -0.88
VPS53-209ENST00000570771 SPATA31D1Q6ZQQ2 1576 aa9.58□□□□□ -0.88
VPS53-209ENST00000570771 ACIN1Q9UKV3 1341 aaKnown RBP9.57□□□□□ -0.88
VPS53-209ENST00000570771 WASHC2CQ9Y4E1 1318 aa9.57□□□□□ -0.88
VPS53-209ENST00000570771 NOS1P29475 1434 aa9.57□□□□□ -0.88
VPS53-209ENST00000570771 ARHGAP31Q2M1Z3 1444 aa9.56□□□□□ -0.88
VPS53-209ENST00000570771 CNTLNQ9NXG0 1405 aa9.56□□□□□ -0.88
VPS53-209ENST00000570771 PREX1Q8TCU6 1659 aa9.56□□□□□ -0.88
VPS53-209ENST00000570771 DHX57Q6P158 1386 aaKnown RBP9.56□□□□□ -0.88
VPS53-209ENST00000570771 KCNA4P22459 653 aa9.56□□□□□ -0.88
VPS53-209ENST00000570771 TRIM52Q96A61 297 aa9.55□□□□□ -0.88
VPS53-209ENST00000570771 PTPRTO14522 1441 aa9.55□□□□□ -0.88
VPS53-209ENST00000570771 LMTK3Q96Q04 1460 aa9.54□□□□□ -0.88
VPS53-209ENST00000570771 CLTCL1P53675 1640 aa9.54□□□□□ -0.88
VPS53-209ENST00000570771 MYO3AQ8NEV4 1616 aa9.54□□□□□ -0.88
VPS53-209ENST00000570771 PKD2Q13563 968 aa9.54□□□□□ -0.88
VPS53-209ENST00000570771 MPHOSPH9Q99550 1183 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms