RNA–Protein interactions for RNA: ENST00000570139.1

CNOT1-222, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 2

Gene CNOT1, Length 458 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-222	ENST00000570139	METRN	Q9UJH8	293 aa		11.83	□□□□□ -0.52
CNOT1-222	ENST00000570139	HMGXB3	Q12766	1538 aa		11.82	□□□□□ -0.52
CNOT1-222	ENST00000570139		A6NJR5	290 aa		11.82	□□□□□ -0.52
CNOT1-222	ENST00000570139	ATAD2B	Q9ULI0	1458 aa		11.82	□□□□□ -0.52
CNOT1-222	ENST00000570139	C2orf72	A6NCS6	295 aa		11.81	□□□□□ -0.52
CNOT1-222	ENST00000570139	ARID3C	A6NKF2	412 aa		11.81	□□□□□ -0.52
CNOT1-222	ENST00000570139	ONECUT3	O60422	494 aa	Predicted RBP	11.81	□□□□□ -0.52
CNOT1-222	ENST00000570139	DPY19L2	Q6NUT2	758 aa		11.81	□□□□□ -0.52
CNOT1-222	ENST00000570139	BMP2K	Q9NSY1	1161 aa	Predicted RBP	11.81	□□□□□ -0.52
CNOT1-222	ENST00000570139	KIF3C	O14782	793 aa		11.8	□□□□□ -0.52
CNOT1-222	ENST00000570139	C7	P10643	843 aa		11.8	□□□□□ -0.52
CNOT1-222	ENST00000570139	GIGYF2	Q6Y7W6	1299 aa	Known RBP	11.79	□□□□□ -0.52
CNOT1-222	ENST00000570139	SLC39A7	Q92504	469 aa		11.79	□□□□□ -0.52
CNOT1-222	ENST00000570139	TBC1D12	O60347	775 aa		11.78	□□□□□ -0.52
CNOT1-222	ENST00000570139	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.78	□□□□□ -0.52
CNOT1-222	ENST00000570139	BOLA1	Q9Y3E2	137 aa		11.78	□□□□□ -0.52
CNOT1-222	ENST00000570139	BAZ1B	Q9UIG0	1483 aa	Known RBP	11.77	□□□□□ -0.52
CNOT1-222	ENST00000570139	PDCD7	Q8N8D1	485 aa	Known RBP	11.77	□□□□□ -0.53
CNOT1-222	ENST00000570139	NCAPD3	P42695	1498 aa		11.76	□□□□□ -0.53
CNOT1-222	ENST00000570139	PDIA4	P13667	645 aa	Known RBP	11.76	□□□□□ -0.53
CNOT1-222	ENST00000570139	FECH	P22830	423 aa		11.76	□□□□□ -0.53
CNOT1-222	ENST00000570139	PTGDR	Q13258	359 aa		11.76	□□□□□ -0.53
CNOT1-222	ENST00000570139	DDX12P	Q92771	950 aa		11.76	□□□□□ -0.53
CNOT1-222	ENST00000570139	UPF1	Q92900	1129 aa	Known RBP eCLIP	11.76	□□□□□ -0.53
CNOT1-222	ENST00000570139	SCUBE2	Q9NQ36	999 aa		11.76	□□□□□ -0.53
CNOT1-222	ENST00000570139	HRC	P23327	699 aa		11.75	□□□□□ -0.53
CNOT1-222	ENST00000570139	ASTL	Q6HA08	431 aa	Predicted RBP	11.75	□□□□□ -0.53
CNOT1-222	ENST00000570139	OXER1	Q8TDS5	423 aa		11.75	□□□□□ -0.53
CNOT1-222	ENST00000570139	TRAK2	O60296	914 aa		11.74	□□□□□ -0.53
CNOT1-222	ENST00000570139	SH3D19	Q5HYK7	790 aa		11.74	□□□□□ -0.53
CNOT1-222	ENST00000570139	CDAN1	Q8IWY9	1227 aa		11.74	□□□□□ -0.53
CNOT1-222	ENST00000570139	CC2D2A	Q9P2K1	1620 aa		11.72	□□□□□ -0.53
CNOT1-222	ENST00000570139	ZBTB7C	A1YPR0	619 aa		11.72	□□□□□ -0.53
CNOT1-222	ENST00000570139	MS4A1	P11836	297 aa		11.72	□□□□□ -0.53
CNOT1-222	ENST00000570139	CLCN1	P35523	988 aa		11.71	□□□□□ -0.53
CNOT1-222	ENST00000570139	MCM6	Q14566	821 aa		11.71	□□□□□ -0.53
CNOT1-222	ENST00000570139	CCDC82	Q8N4S0	544 aa		11.71	□□□□□ -0.53
CNOT1-222	ENST00000570139	CLUAP1	Q96AJ1	413 aa		11.71	□□□□□ -0.53
CNOT1-222	ENST00000570139	OCEL1	Q9H607	264 aa		11.71	□□□□□ -0.53
CNOT1-222	ENST00000570139	ATMIN	O43313	823 aa	Predicted RBP	11.69	□□□□□ -0.54
CNOT1-222	ENST00000570139	IER5L	Q5T953	404 aa		11.69	□□□□□ -0.54
CNOT1-222	ENST00000570139	EVI5	O60447	810 aa		11.68	□□□□□ -0.54
CNOT1-222	ENST00000570139	IRX5	P78411	483 aa	Predicted RBP	11.68	□□□□□ -0.54
CNOT1-222	ENST00000570139	NPM2	Q86SE8	214 aa	Known RBP	11.67	□□□□□ -0.54
CNOT1-222	ENST00000570139	GPCPD1	Q9NPB8	672 aa		11.67	□□□□□ -0.54
CNOT1-222	ENST00000570139	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.66	□□□□□ -0.54
CNOT1-222	ENST00000570139	SKIV2L	Q15477	1246 aa	Known RBP	11.65	□□□□□ -0.54
CNOT1-222	ENST00000570139	PROSER2	Q86WR7	435 aa	Predicted RBP	11.65	□□□□□ -0.54
CNOT1-222	ENST00000570139	CCDC88B	A6NC98	1476 aa		11.64	□□□□□ -0.55
CNOT1-222	ENST00000570139	RAD21	O60216	631 aa		11.64	□□□□□ -0.55
CNOT1-222	ENST00000570139	CCDC9	Q9Y3X0	531 aa	Known RBP	11.64	□□□□□ -0.55
CNOT1-222	ENST00000570139	PRIM1	P49642	420 aa	Known RBP	11.63	□□□□□ -0.55
CNOT1-222	ENST00000570139	TMUB1	Q9BVT8	246 aa		11.63	□□□□□ -0.55
CNOT1-222	ENST00000570139	REPIN1	Q9BWE0	567 aa	Known RBP	11.63	□□□□□ -0.55
CNOT1-222	ENST00000570139	PLCG2	P16885	1265 aa		11.62	□□□□□ -0.55
CNOT1-222	ENST00000570139	MDM2	Q00987	491 aa	Predicted RBP	11.61	□□□□□ -0.55
CNOT1-222	ENST00000570139	EPAS1	Q99814	870 aa		11.61	□□□□□ -0.55
CNOT1-222	ENST00000570139	SSTR3	P32745	418 aa	Predicted RBP	11.6	□□□□□ -0.55
CNOT1-222	ENST00000570139	EN1	Q05925	392 aa	Predicted RBP	11.6	□□□□□ -0.55
CNOT1-222	ENST00000570139	CCDC97	Q96F63	343 aa	Predicted RBP	11.6	□□□□□ -0.55
CNOT1-222	ENST00000570139	SERPINA10	Q9UK55	444 aa		11.6	□□□□□ -0.55
CNOT1-222	ENST00000570139	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.6	□□□□□ -0.55
CNOT1-222	ENST00000570139	ATN1	P54259	1190 aa	Predicted RBP	11.59	□□□□□ -0.55
CNOT1-222	ENST00000570139	MAP3K7	O43318	606 aa		11.57	□□□□□ -0.56
CNOT1-222	ENST00000570139	PHF14	O94880	888 aa		11.57	□□□□□ -0.56
CNOT1-222	ENST00000570139	PTCD2	Q8WV60	388 aa	Known RBP	11.57	□□□□□ -0.56
CNOT1-222	ENST00000570139	SPDYE5	A6NIY4	337 aa		11.56	□□□□□ -0.56
CNOT1-222	ENST00000570139	BEGAIN	Q9BUH8	593 aa		11.56	□□□□□ -0.56
CNOT1-222	ENST00000570139	MMRN1	Q13201	1228 aa		11.55	□□□□□ -0.56
CNOT1-222	ENST00000570139	CDHR5	Q9HBB8	845 aa		11.55	□□□□□ -0.56
CNOT1-222	ENST00000570139	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.55	□□□□□ -0.56
CNOT1-222	ENST00000570139	NPDC1	Q9NQX5	325 aa	Predicted RBP	11.55	□□□□□ -0.56
CNOT1-222	ENST00000570139	ZNF777	Q9ULD5	760 aa	Predicted RBP	11.55	□□□□□ -0.56
CNOT1-222	ENST00000570139	PRDM2	Q13029	1718 aa		11.55	□□□□□ -0.56
CNOT1-222	ENST00000570139	TMEM92	Q6UXU6	159 aa		11.54	□□□□□ -0.56
CNOT1-222	ENST00000570139	FNBP4	Q8N3X1	1017 aa	Predicted RBP	11.54	□□□□□ -0.56
CNOT1-222	ENST00000570139	OAT	P04181	439 aa		11.53	□□□□□ -0.56
CNOT1-222	ENST00000570139	FAM217B	Q9NTX9	383 aa	Predicted RBP	11.53	□□□□□ -0.56
CNOT1-222	ENST00000570139	KCTD17	Q8N5Z5	321 aa		11.52	□□□□□ -0.57
CNOT1-222	ENST00000570139	DIXDC1	Q155Q3	683 aa		11.51	□□□□□ -0.57
CNOT1-222	ENST00000570139	PHOX2B	Q99453	314 aa		11.51	□□□□□ -0.57
CNOT1-222	ENST00000570139	TRAIP	Q9BWF2	469 aa		11.51	□□□□□ -0.57
CNOT1-222	ENST00000570139	SLC34A2	O95436	690 aa		11.5	□□□□□ -0.57
CNOT1-222	ENST00000570139	BANK1	Q8NDB2	785 aa		11.5	□□□□□ -0.57
CNOT1-222	ENST00000570139	POM121	Q96HA1	1249 aa		11.5	□□□□□ -0.57
CNOT1-222	ENST00000570139	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	11.5	□□□□□ -0.57
CNOT1-222	ENST00000570139	POLR3E	Q9NVU0	708 aa		11.5	□□□□□ -0.57
CNOT1-222	ENST00000570139	METTL3	Q86U44	580 aa	Known RBP	11.49	□□□□□ -0.57
CNOT1-222	ENST00000570139	PROCA1	Q8NCQ7	364 aa	Predicted RBP	11.49	□□□□□ -0.57
CNOT1-222	ENST00000570139	SLAIN1	Q8ND83	568 aa		11.49	□□□□□ -0.57
CNOT1-222	ENST00000570139	CERK	Q8TCT0	537 aa		11.49	□□□□□ -0.57
CNOT1-222	ENST00000570139	POTEF	A5A3E0	1075 aa		11.48	□□□□□ -0.57
CNOT1-222	ENST00000570139	CLK2	P49760	499 aa	Known RBP	11.48	□□□□□ -0.57
CNOT1-222	ENST00000570139	MYSM1	Q5VVJ2	828 aa		11.48	□□□□□ -0.57
CNOT1-222	ENST00000570139	TYW1B	Q6NUM6	668 aa		11.48	□□□□□ -0.57
CNOT1-222	ENST00000570139	SPNS2	Q8IVW8	549 aa		11.48	□□□□□ -0.57
CNOT1-222	ENST00000570139	FBXW7	Q969H0	707 aa		11.48	□□□□□ -0.57
CNOT1-222	ENST00000570139	CFTR	P13569	1480 aa		11.48	□□□□□ -0.57
CNOT1-222	ENST00000570139	NECTIN2	Q92692	538 aa		11.47	□□□□□ -0.57
CNOT1-222	ENST00000570139	RBM33	Q96EV2	1170 aa	Known RBP	11.47	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms