RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 SHANK2Q9UPX8 1470 aa11.63□□□□□ -0.55
VPS39-213ENST00000570062 ZCCHC11Q5TAX3 1644 aaKnown RBP11.63□□□□□ -0.55
VPS39-213ENST00000570062 PTPRKQ15262 1439 aa11.62□□□□□ -0.55
VPS39-213ENST00000570062 ZNF644Q9H582 1327 aaPredicted RBP11.61□□□□□ -0.55
VPS39-213ENST00000570062 DNMT1P26358 1616 aaKnown RBP11.61□□□□□ -0.55
VPS39-213ENST00000570062 KDM4FA0A1W2PPD8 638 aa11.61□□□□□ -0.55
VPS39-213ENST00000570062 ADGRL2O95490 1459 aa11.61□□□□□ -0.55
VPS39-213ENST00000570062 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.6□□□□□ -0.55
VPS39-213ENST00000570062 ARHGEF5Q12774 1597 aa11.6□□□□□ -0.55
VPS39-213ENST00000570062 CHIC2Q9UKJ5 165 aa11.6□□□□□ -0.55
VPS39-213ENST00000570062 ARHGAP5Q13017 1502 aa11.6□□□□□ -0.55
VPS39-213ENST00000570062 NCOA1Q15788 1441 aa11.6□□□□□ -0.55
VPS39-213ENST00000570062 ASXL2Q76L83 1435 aa11.6□□□□□ -0.55
VPS39-213ENST00000570062 RRP7BPQ9NSQ0 103 aa11.59□□□□□ -0.55
VPS39-213ENST00000570062 CCDC141Q6ZP82 1450 aa11.58□□□□□ -0.56
VPS39-213ENST00000570062 PREX2Q70Z35 1606 aa11.57□□□□□ -0.56
VPS39-213ENST00000570062 TSPYL2Q9H2G4 693 aaPredicted RBP11.57□□□□□ -0.56
VPS39-213ENST00000570062 MBD5Q9P267 1494 aa11.57□□□□□ -0.56
VPS39-213ENST00000570062 HNRNPMP52272 730 aaKnown RBP eCLIP11.56□□□□□ -0.56
VPS39-213ENST00000570062 C9orf84Q5VXU9 1444 aa11.56□□□□□ -0.56
VPS39-213ENST00000570062 CDC42BPAQ5VT25 1732 aa11.55□□□□□ -0.56
VPS39-213ENST00000570062 PLEKHG5O94827 1062 aa11.55□□□□□ -0.56
VPS39-213ENST00000570062 TRIM52Q96A61 297 aa11.55□□□□□ -0.56
VPS39-213ENST00000570062 LMTK3Q96Q04 1460 aa11.55□□□□□ -0.56
VPS39-213ENST00000570062 RTEL1-TNFRSF6BF6WH68 1400 aa11.54□□□□□ -0.56
VPS39-213ENST00000570062 MIER1Q8N108 512 aa11.54□□□□□ -0.56
VPS39-213ENST00000570062 KIF13AQ9H1H9 1805 aa11.53□□□□□ -0.56
VPS39-213ENST00000570062 ABCA9Q8IUA7 1624 aa11.53□□□□□ -0.56
VPS39-213ENST00000570062 ANKRD50Q9ULJ7 1429 aa11.53□□□□□ -0.56
VPS39-213ENST00000570062 MYO5CQ9NQX4 1742 aa11.53□□□□□ -0.56
VPS39-213ENST00000570062 MS4A3Q96HJ5 214 aa11.53□□□□□ -0.56
VPS39-213ENST00000570062 MAPKBP1O60336 1514 aa11.53□□□□□ -0.56
VPS39-213ENST00000570062 GCC2Q8IWJ2 1684 aa11.52□□□□□ -0.56
VPS39-213ENST00000570062 MPHOSPH9Q99550 1183 aa11.52□□□□□ -0.57
VPS39-213ENST00000570062 TTC37Q6PGP7 1564 aa11.52□□□□□ -0.57
VPS39-213ENST00000570062 HECW2Q9P2P5 1572 aa11.52□□□□□ -0.57
VPS39-213ENST00000570062 CD109Q6YHK3 1445 aa11.52□□□□□ -0.57
VPS39-213ENST00000570062 FANCAO15360 1455 aa11.51□□□□□ -0.57
VPS39-213ENST00000570062 MAST1Q9Y2H9 1570 aa11.51□□□□□ -0.57
VPS39-213ENST00000570062 FBXO41Q8TF61 875 aa11.51□□□□□ -0.57
VPS39-213ENST00000570062 KIF15Q9NS87 1388 aa11.51□□□□□ -0.57
VPS39-213ENST00000570062 SAMD9LQ8IVG5 1584 aa11.5□□□□□ -0.57
VPS39-213ENST00000570062 PELP1Q8IZL8 1130 aaKnown RBP11.5□□□□□ -0.57
VPS39-213ENST00000570062 SPAG9O60271 1321 aaKnown RBP11.5□□□□□ -0.57
VPS39-213ENST00000570062 CDC42BPBQ9Y5S2 1711 aa11.49□□□□□ -0.57
VPS39-213ENST00000570062 CCDC61Q9Y6R9 512 aa11.49□□□□□ -0.57
VPS39-213ENST00000570062 ADGBQ8N7X0 1667 aa11.49□□□□□ -0.57
VPS39-213ENST00000570062 POTEB2H3BUK9 544 aa11.48□□□□□ -0.57
VPS39-213ENST00000570062 NEO1Q92859 1461 aa11.48□□□□□ -0.57
VPS39-213ENST00000570062 CFAP74Q9C0B2 1584 aa11.48□□□□□ -0.57
VPS39-213ENST00000570062 CROCC2H7BZ55 1655 aa11.47□□□□□ -0.57
VPS39-213ENST00000570062 ABCC1P33527 1531 aa11.47□□□□□ -0.57
VPS39-213ENST00000570062 SYCP2Q9BX26 1530 aa11.47□□□□□ -0.57
VPS39-213ENST00000570062 ASTLQ6HA08 431 aaPredicted RBP11.47□□□□□ -0.57
VPS39-213ENST00000570062 GLI2P10070 1586 aa11.46□□□□□ -0.57
VPS39-213ENST00000570062 ERBINQ96RT1 1412 aa11.46□□□□□ -0.57
VPS39-213ENST00000570062 SCAPERQ9BY12 1400 aa11.46□□□□□ -0.57
VPS39-213ENST00000570062 DUOX2Q9NRD8 1548 aa11.45□□□□□ -0.58
VPS39-213ENST00000570062 ADGRL1O94910 1474 aa11.45□□□□□ -0.58
VPS39-213ENST00000570062 ATMINO43313 823 aaPredicted RBP11.45□□□□□ -0.58
VPS39-213ENST00000570062 OTUD5Q96G74 571 aa11.45□□□□□ -0.58
VPS39-213ENST00000570062 ZNF518AQ6AHZ1 1483 aa11.44□□□□□ -0.58
VPS39-213ENST00000570062 NUP155O75694 1391 aa11.44□□□□□ -0.58
VPS39-213ENST00000570062 TONSLQ96HA7 1378 aa11.44□□□□□ -0.58
VPS39-213ENST00000570062 SOCS7O14512 581 aa11.44□□□□□ -0.58
VPS39-213ENST00000570062 PLXNC1O60486 1568 aa11.44□□□□□ -0.58
VPS39-213ENST00000570062 PLCD3Q8N3E9 789 aa11.43□□□□□ -0.58
VPS39-213ENST00000570062 KIF12Q96FN5 646 aa11.43□□□□□ -0.58
VPS39-213ENST00000570062 TRAPPC8Q9Y2L5 1435 aa11.43□□□□□ -0.58
VPS39-213ENST00000570062 KDM5DQ9BY66 1539 aa11.42□□□□□ -0.58
VPS39-213ENST00000570062 ARHGEF12Q9NZN5 1544 aa11.42□□□□□ -0.58
VPS39-213ENST00000570062 ZNF316A6NFI3 1004 aaPredicted RBP11.42□□□□□ -0.58
VPS39-213ENST00000570062 NEUROD1Q13562 356 aa11.42□□□□□ -0.58
VPS39-213ENST00000570062 AFAP1Q8N556 730 aa11.42□□□□□ -0.58
VPS39-213ENST00000570062 SLC39A7Q92504 469 aa11.42□□□□□ -0.58
VPS39-213ENST00000570062 METRNQ9UJH8 293 aa11.42□□□□□ -0.58
VPS39-213ENST00000570062 MYT1LQ9UL68 1186 aa11.42□□□□□ -0.58
VPS39-213ENST00000570062 TEX14Q8IWB6 1497 aa11.41□□□□□ -0.58
VPS39-213ENST00000570062 PPP1R15AO75807 674 aaPredicted RBP11.41□□□□□ -0.58
VPS39-213ENST00000570062 C7P10643 843 aa11.41□□□□□ -0.58
VPS39-213ENST00000570062 FAM69CQ0P6D2 419 aa11.41□□□□□ -0.58
VPS39-213ENST00000570062 RASEFQ8IZ41 740 aa11.41□□□□□ -0.58
VPS39-213ENST00000570062 DHX29Q7Z478 1369 aaKnown RBP11.41□□□□□ -0.58
VPS39-213ENST00000570062 ANKRD30BQ9BXX2 1392 aa11.41□□□□□ -0.58
VPS39-213ENST00000570062 ILDR2Q71H61 639 aa11.4□□□□□ -0.58
VPS39-213ENST00000570062 SIN3AQ96ST3 1273 aa11.4□□□□□ -0.58
VPS39-213ENST00000570062 KANK1Q14678 1352 aa11.4□□□□□ -0.59
VPS39-213ENST00000570062 DENND4BO75064 1496 aaPredicted RBP11.39□□□□□ -0.59
VPS39-213ENST00000570062 MLH3Q9UHC1 1453 aa11.39□□□□□ -0.59
VPS39-213ENST00000570062 KDM6BO15054 1643 aa11.39□□□□□ -0.59
VPS39-213ENST00000570062 PKD2Q13563 968 aa11.39□□□□□ -0.59
VPS39-213ENST00000570062 POGZQ7Z3K3 1410 aa11.38□□□□□ -0.59
VPS39-213ENST00000570062 PZPP20742 1482 aa11.38□□□□□ -0.59
VPS39-213ENST00000570062 ATP7AQ04656 1500 aa11.36□□□□□ -0.59
VPS39-213ENST00000570062 MAP3K13O43283 966 aa11.36□□□□□ -0.59
VPS39-213ENST00000570062 ATN1P54259 1190 aaPredicted RBP11.36□□□□□ -0.59
VPS39-213ENST00000570062 STAC3Q96MF2 364 aa11.36□□□□□ -0.59
VPS39-213ENST00000570062 ZFYVE16Q7Z3T8 1539 aa11.35□□□□□ -0.59
VPS39-213ENST00000570062 FKBP8Q14318 412 aa11.35□□□□□ -0.59
VPS39-213ENST00000570062 ZBTB47Q9UFB7 747 aaPredicted RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms