RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 ESF1Q9H501 851 aaKnown RBP12.32□□□□□ -0.44
CDH3-209ENST00000569080 ZC3H13Q5T200 1668 aaKnown RBP12.32□□□□□ -0.44
CDH3-209ENST00000569080 DAPK1P53355 1430 aa12.31□□□□□ -0.44
CDH3-209ENST00000569080 GGT6Q6P531 493 aa12.31□□□□□ -0.44
CDH3-209ENST00000569080 PPP6R1Q9UPN7 881 aa12.31□□□□□ -0.44
CDH3-209ENST00000569080 PZPP20742 1482 aa12.31□□□□□ -0.44
CDH3-209ENST00000569080 DUOX2Q9NRD8 1548 aa12.31□□□□□ -0.44
CDH3-209ENST00000569080 NCOA1Q15788 1441 aa12.3□□□□□ -0.44
CDH3-209ENST00000569080 ABCC3O15438 1527 aa12.3□□□□□ -0.44
CDH3-209ENST00000569080 PRDM15P57071 1507 aaPredicted RBP12.3□□□□□ -0.44
CDH3-209ENST00000569080 DEPDC5O75140 1603 aa12.29□□□□□ -0.44
CDH3-209ENST00000569080 TSPY4P0CV99 314 aa12.29□□□□□ -0.44
CDH3-209ENST00000569080 TSPY10P0CW01 314 aa12.29□□□□□ -0.44
CDH3-209ENST00000569080 ILDR1Q86SU0 546 aaPredicted RBP12.29□□□□□ -0.44
CDH3-209ENST00000569080 CAMSAP1Q5T5Y3 1602 aa12.29□□□□□ -0.44
CDH3-209ENST00000569080 KIF3BO15066 747 aa12.28□□□□□ -0.44
CDH3-209ENST00000569080 APLP2Q06481 763 aa12.28□□□□□ -0.44
CDH3-209ENST00000569080 CEP152O94986 1710 aa12.28□□□□□ -0.44
CDH3-209ENST00000569080 KIF15Q9NS87 1388 aa12.27□□□□□ -0.45
CDH3-209ENST00000569080 ERBINQ96RT1 1412 aa12.27□□□□□ -0.45
CDH3-209ENST00000569080 ADGRL2O95490 1459 aa12.27□□□□□ -0.45
CDH3-209ENST00000569080 PLA2R1Q13018 1463 aa12.27□□□□□ -0.45
CDH3-209ENST00000569080 PTPRTO14522 1441 aa12.26□□□□□ -0.45
CDH3-209ENST00000569080 A2ML1A8K2U0 1454 aa12.26□□□□□ -0.45
CDH3-209ENST00000569080 SPATA31D1Q6ZQQ2 1576 aa12.26□□□□□ -0.45
CDH3-209ENST00000569080 VWDEQ8N2E2 1590 aa12.24□□□□□ -0.45
CDH3-209ENST00000569080 ERVK-7P63135 1459 aa12.22□□□□□ -0.45
CDH3-209ENST00000569080 TNRQ92752 1358 aa12.22□□□□□ -0.45
CDH3-209ENST00000569080 WASHC2CQ9Y4E1 1318 aa12.22□□□□□ -0.45
CDH3-209ENST00000569080 POLR1AO95602 1720 aaPredicted RBP12.22□□□□□ -0.45
CDH3-209ENST00000569080 LTBP4Q8N2S1 1624 aa12.22□□□□□ -0.45
CDH3-209ENST00000569080 NEURL4Q96JN8 1562 aa12.22□□□□□ -0.45
CDH3-209ENST00000569080 FBXO31Q5XUX0 539 aaPredicted RBP12.21□□□□□ -0.45
CDH3-209ENST00000569080 LMTK2Q8IWU2 1503 aa12.21□□□□□ -0.46
CDH3-209ENST00000569080 NLRP1Q9C000 1473 aa12.21□□□□□ -0.46
CDH3-209ENST00000569080 ARHGAP31Q2M1Z3 1444 aa12.2□□□□□ -0.46
CDH3-209ENST00000569080 ANKRD30AQ9BXX3 1397 aa12.19□□□□□ -0.46
CDH3-209ENST00000569080 FBXO41Q8TF61 875 aa12.19□□□□□ -0.46
CDH3-209ENST00000569080 RRP7BPQ9NSQ0 103 aa12.18□□□□□ -0.46
CDH3-209ENST00000569080 DMRT2Q9Y5R5 561 aa12.18□□□□□ -0.46
CDH3-209ENST00000569080 EFCAB6Q5THR3 1501 aa12.17□□□□□ -0.46
CDH3-209ENST00000569080 UGGT1Q9NYU2 1555 aa12.17□□□□□ -0.46
CDH3-209ENST00000569080 UBR1Q8IWV7 1749 aa12.17□□□□□ -0.46
CDH3-209ENST00000569080 CERKQ8TCT0 537 aa12.16□□□□□ -0.46
CDH3-209ENST00000569080 UNC13BO14795 1591 aa12.16□□□□□ -0.46
CDH3-209ENST00000569080 NCKAP5LQ9HCH0 1330 aa12.15□□□□□ -0.46
CDH3-209ENST00000569080 PKD2Q13563 968 aa12.15□□□□□ -0.46
CDH3-209ENST00000569080 CHIC2Q9UKJ5 165 aa12.15□□□□□ -0.46
CDH3-209ENST00000569080 SYNMO15061 1565 aa12.14□□□□□ -0.47
CDH3-209ENST00000569080 ANKRD50Q9ULJ7 1429 aa12.14□□□□□ -0.47
CDH3-209ENST00000569080 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.14□□□□□ -0.47
CDH3-209ENST00000569080 FAM50AQ14320 339 aaKnown RBP12.13□□□□□ -0.47
CDH3-209ENST00000569080 ROCK1Q13464 1354 aa12.13□□□□□ -0.47
CDH3-209ENST00000569080 MED14O60244 1454 aa12.13□□□□□ -0.47
CDH3-209ENST00000569080 IQSEC2Q5JU85 1478 aa12.13□□□□□ -0.47
CDH3-209ENST00000569080 CFAP65Q6ZU64 1925 aaKnown RBP12.13□□□□□ -0.47
CDH3-209ENST00000569080 PIK3C2BO00750 1634 aa12.12□□□□□ -0.47
CDH3-209ENST00000569080 TET3O43151 1660 aa12.12□□□□□ -0.47
CDH3-209ENST00000569080 KDM5AP29375 1690 aaKnown RBP12.12□□□□□ -0.47
CDH3-209ENST00000569080 IQGAP1P46940 1657 aa12.11□□□□□ -0.47
CDH3-209ENST00000569080 ARHGAP23Q9P227 1491 aa12.11□□□□□ -0.47
CDH3-209ENST00000569080 SLIT1O75093 1534 aa12.11□□□□□ -0.47
CDH3-209ENST00000569080 NOS1P29475 1434 aa12.11□□□□□ -0.47
CDH3-209ENST00000569080 RRBP1Q9P2E9 1410 aaKnown RBP12.11□□□□□ -0.47
CDH3-209ENST00000569080 GCC2Q8IWJ2 1684 aa12.1□□□□□ -0.47
CDH3-209ENST00000569080 KANK1Q14678 1352 aa12.1□□□□□ -0.47
CDH3-209ENST00000569080 IQGAP3Q86VI3 1631 aa12.1□□□□□ -0.47
CDH3-209ENST00000569080 ZNF335Q9H4Z2 1342 aaPredicted RBP12.1□□□□□ -0.47
CDH3-209ENST00000569080 RPRD2Q5VT52 1461 aaKnown RBP12.08□□□□□ -0.47
CDH3-209ENST00000569080 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.08□□□□□ -0.48
CDH3-209ENST00000569080 NPHP4O75161 1426 aaPredicted RBP12.08□□□□□ -0.48
CDH3-209ENST00000569080 ADGRB3O60242 1522 aa12.07□□□□□ -0.48
CDH3-209ENST00000569080 E9PCH4 1651 aa12.07□□□□□ -0.48
CDH3-209ENST00000569080 PPARGC1BQ86YN6 1023 aaKnown RBP12.07□□□□□ -0.48
CDH3-209ENST00000569080 THEMISQ8N1K5 641 aaPredicted RBP12.07□□□□□ -0.48
CDH3-209ENST00000569080 STRCP1A6NGW2 1772 aa12.07□□□□□ -0.48
CDH3-209ENST00000569080 SCAF11Q99590 1463 aaKnown RBP12.07□□□□□ -0.48
CDH3-209ENST00000569080 CPS1P31327 1500 aa12.06□□□□□ -0.48
CDH3-209ENST00000569080 ANKLE2Q86XL3 938 aa12.04□□□□□ -0.48
CDH3-209ENST00000569080 MYO5BQ9ULV0 1848 aa12.03□□□□□ -0.48
CDH3-209ENST00000569080 TMEM2Q9UHN6 1383 aa12.03□□□□□ -0.48
CDH3-209ENST00000569080 TMEM131LA2VDJ0 1609 aa12.02□□□□□ -0.49
CDH3-209ENST00000569080 ALKQ9UM73 1620 aa12.01□□□□□ -0.49
CDH3-209ENST00000569080 LTKP29376 864 aa12.01□□□□□ -0.49
CDH3-209ENST00000569080 IDI1Q13907 227 aa12.01□□□□□ -0.49
CDH3-209ENST00000569080 ZFYVE9O95405 1425 aa12□□□□□ -0.49
CDH3-209ENST00000569080 NAIPQ13075 1403 aa12□□□□□ -0.49
CDH3-209ENST00000569080 SPHKAPQ2M3C7 1700 aa11.98□□□□□ -0.49
CDH3-209ENST00000569080 LRRC7Q96NW7 1537 aa11.98□□□□□ -0.49
CDH3-209ENST00000569080 ITGAEP38570 1179 aa11.98□□□□□ -0.49
CDH3-209ENST00000569080 XIRP1Q702N8 1843 aaKnown RBP11.97□□□□□ -0.49
CDH3-209ENST00000569080 HFM1A2PYH4 1435 aa11.97□□□□□ -0.49
CDH3-209ENST00000569080 NUP155O75694 1391 aa11.97□□□□□ -0.49
CDH3-209ENST00000569080 SLC52A1Q9NWF4 448 aa11.97□□□□□ -0.49
CDH3-209ENST00000569080 NWD1Q149M9 1564 aa11.96□□□□□ -0.49
CDH3-209ENST00000569080 TXNDC2Q86VQ3 553 aa11.96□□□□□ -0.49
CDH3-209ENST00000569080 TRPM2O94759 1503 aa11.93□□□□□ -0.5
CDH3-209ENST00000569080 RIMS2Q9UQ26 1411 aa11.93□□□□□ -0.5
CDH3-209ENST00000569080 CLTCL1P53675 1640 aa11.93□□□□□ -0.5
CDH3-209ENST00000569080 UBAP1LF5GYI3 381 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms