RNA–Protein interactions for RNA: ENST00000569066.2

UBR1-208, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 1 (best)

Gene UBR1, Length 2,250 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-208ENST00000569066 SLAIN1Q8ND83 568 aa11.4□□□□□ -0.58
UBR1-208ENST00000569066 KHSRPQ92945 711 aaKnown RBP eCLIP11.4□□□□□ -0.582e-7■□□□□ 10.8
UBR1-208ENST00000569066 DDRGK1Q96HY6 314 aa11.4□□□□□ -0.58
UBR1-208ENST00000569066 KDM4FA0A1W2PPD8 638 aa11.4□□□□□ -0.58
UBR1-208ENST00000569066 POTEJP0CG39 1038 aa11.38□□□□□ -0.59
UBR1-208ENST00000569066 EPAS1Q99814 870 aa11.38□□□□□ -0.59
UBR1-208ENST00000569066 SP7Q8TDD2 431 aaPredicted RBP11.37□□□□□ -0.59
UBR1-208ENST00000569066 MDM2Q00987 491 aaPredicted RBP11.36□□□□□ -0.59
UBR1-208ENST00000569066 DAXXQ9UER7 740 aaPredicted RBP11.36□□□□□ -0.59
UBR1-208ENST00000569066 NUDT7P0C024 238 aa11.35□□□□□ -0.59
UBR1-208ENST00000569066 TYW1BQ6NUM6 668 aa11.35□□□□□ -0.59
UBR1-208ENST00000569066 JPH4Q96JJ6 628 aa11.35□□□□□ -0.59
UBR1-208ENST00000569066 POTEB2H3BUK9 544 aa11.33□□□□□ -0.6
UBR1-208ENST00000569066 FOSBP53539 338 aa11.33□□□□□ -0.6
UBR1-208ENST00000569066 PADI6Q6TGC4 694 aa11.32□□□□□ -0.6
UBR1-208ENST00000569066 ZNF454Q8N9F8 522 aa11.32□□□□□ -0.6
UBR1-208ENST00000569066 TMUB1Q9BVT8 246 aa11.32□□□□□ -0.6
UBR1-208ENST00000569066 ARSIQ5FYB1 569 aa11.32□□□□□ -0.6
UBR1-208ENST00000569066 ARXQ96QS3 562 aa11.31□□□□□ -0.6
UBR1-208ENST00000569066 HOXB3P14651 431 aaPredicted RBP11.3□□□□□ -0.6
UBR1-208ENST00000569066 C6orf132Q5T0Z8 1188 aa11.3□□□□□ -0.6
UBR1-208ENST00000569066 METTL3Q86U44 580 aaKnown RBP11.3□□□□□ -0.6
UBR1-208ENST00000569066 ADAM33Q9BZ11 813 aa11.3□□□□□ -0.6
UBR1-208ENST00000569066 GPCPD1Q9NPB8 672 aa11.29□□□□□ -0.6
UBR1-208ENST00000569066 FBXW7Q969H0 707 aa11.29□□□□□ -0.6
UBR1-208ENST00000569066 CLCN1P35523 988 aa11.28□□□□□ -0.6
UBR1-208ENST00000569066 ZMYND15Q9H091 742 aa11.28□□□□□ -0.6
UBR1-208ENST00000569066 ZDHHC16Q969W1 377 aa11.27□□□□□ -0.61
UBR1-208ENST00000569066 ADGRG1Q9Y653 693 aa11.26□□□□□ -0.61
UBR1-208ENST00000569066 SSTR3P32745 418 aaPredicted RBP11.25□□□□□ -0.61
UBR1-208ENST00000569066 GPR153Q6NV75 609 aa11.25□□□□□ -0.61
UBR1-208ENST00000569066 PXYLP1Q8TE99 480 aa11.24□□□□□ -0.61
UBR1-208ENST00000569066 BEGAINQ9BUH8 593 aa11.24□□□□□ -0.61
UBR1-208ENST00000569066 GOPCQ9HD26 462 aa11.24□□□□□ -0.61
UBR1-208ENST00000569066 ONECUT3O60422 494 aaPredicted RBP11.23□□□□□ -0.61
UBR1-208ENST00000569066 FAM217BQ9NTX9 383 aaPredicted RBP11.23□□□□□ -0.61
UBR1-208ENST00000569066 FAM198AQ9UFP1 575 aa11.21□□□□□ -0.61
UBR1-208ENST00000569066 LHX6Q9UPM6 363 aa11.21□□□□□ -0.62
UBR1-208ENST00000569066 COL9A1P20849 921 aa11.2□□□□□ -0.62
UBR1-208ENST00000569066 DOK7Q18PE1 504 aa11.2□□□□□ -0.62
UBR1-208ENST00000569066 TTC13Q8NBP0 860 aa11.2□□□□□ -0.62
UBR1-208ENST00000569066 C3orf80F5H4A9 247 aa11.2□□□□□ -0.62
UBR1-208ENST00000569066 PROCA1Q8NCQ7 364 aaPredicted RBP11.2□□□□□ -0.62
UBR1-208ENST00000569066 CDCA7LQ96GN5 454 aa11.2□□□□□ -0.62
UBR1-208ENST00000569066 C1orf115Q9H7X2 142 aa11.2□□□□□ -0.62
UBR1-208ENST00000569066 SH3D19Q5HYK7 790 aa11.19□□□□□ -0.62
UBR1-208ENST00000569066 PCMTD1Q96MG8 357 aaPredicted RBP11.19□□□□□ -0.62
UBR1-208ENST00000569066 POLR3EQ9NVU0 708 aa11.19□□□□□ -0.62
UBR1-208ENST00000569066 RSPH6AQ9H0K4 717 aa11.19□□□□□ -0.62
UBR1-208ENST00000569066 ARID3CA6NKF2 412 aa11.18□□□□□ -0.62
UBR1-208ENST00000569066 OATP04181 439 aa11.18□□□□□ -0.62
UBR1-208ENST00000569066 HOMEZQ8IX15 550 aa11.18□□□□□ -0.62
UBR1-208ENST00000569066 CERKQ8TCT0 537 aa11.18□□□□□ -0.62
UBR1-208ENST00000569066 PRSS12P56730 875 aa11.18□□□□□ -0.62
UBR1-208ENST00000569066 CLUAP1Q96AJ1 413 aa11.16□□□□□ -0.62
UBR1-208ENST00000569066 FBXO31Q5XUX0 539 aaPredicted RBP11.15□□□□□ -0.62
UBR1-208ENST00000569066 ZNF710Q8N1W2 664 aa11.15□□□□□ -0.62
UBR1-208ENST00000569066 TSKSQ9UJT2 592 aa11.15□□□□□ -0.62
UBR1-208ENST00000569066 MYSM1Q5VVJ2 828 aa11.14□□□□□ -0.63
UBR1-208ENST00000569066 RBM27Q9P2N5 1060 aaKnown RBP11.14□□□□□ -0.63
UBR1-208ENST00000569066 RIMBP2O15034 1052 aa11.14□□□□□ -0.63
UBR1-208ENST00000569066 ARID3AQ99856 593 aa11.14□□□□□ -0.63
UBR1-208ENST00000569066 SKIV2LQ15477 1246 aaKnown RBP11.13□□□□□ -0.63
UBR1-208ENST00000569066 ATP1B4Q9UN42 357 aaPredicted RBP11.13□□□□□ -0.63
UBR1-208ENST00000569066 UBTFP17480 764 aaKnown RBP11.12□□□□□ -0.63
UBR1-208ENST00000569066 FLIIQ13045 1269 aa11.12□□□□□ -0.63
UBR1-208ENST00000569066 MCM6Q14566 821 aa11.12□□□□□ -0.63
UBR1-208ENST00000569066 ZSWIM6Q9HCJ5 1215 aa11.11□□□□□ -0.63
UBR1-208ENST00000569066 RCCD1A6NED2 376 aa11.1□□□□□ -0.63
UBR1-208ENST00000569066 RBM46Q8TBY0 533 aaKnown RBP11.1□□□□□ -0.63
UBR1-208ENST00000569066 BCL2L12Q9HB09 334 aa11.1□□□□□ -0.63
UBR1-208ENST00000569066 PPP4R3BQ5MIZ7 849 aa11.09□□□□□ -0.63
UBR1-208ENST00000569066 EYA1Q99502 592 aa11.09□□□□□ -0.63
UBR1-208ENST00000569066 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.09□□□□□ -0.63
UBR1-208ENST00000569066 TBC1D2Q9BYX2 928 aa11.09□□□□□ -0.63
UBR1-208ENST00000569066 NUDT18Q6ZVK8 323 aa11.09□□□□□ -0.63
UBR1-208ENST00000569066 SCUBE2Q9NQ36 999 aa11.09□□□□□ -0.63
UBR1-208ENST00000569066 SMAPO00193 183 aa11.08□□□□□ -0.64
UBR1-208ENST00000569066 PROX2Q3B8N5 592 aa11.07□□□□□ -0.64
UBR1-208ENST00000569066 LIMD1Q9UGP4 676 aa11.07□□□□□ -0.64
UBR1-208ENST00000569066 POM121Q96HA1 1249 aa11.07□□□□□ -0.64
UBR1-208ENST00000569066 APBB1O00213 710 aa11.06□□□□□ -0.64
UBR1-208ENST00000569066 CLK2P49760 499 aaKnown RBP11.06□□□□□ -0.64
UBR1-208ENST00000569066 PPP1R3GB7ZBB8 358 aa11.05□□□□□ -0.64
UBR1-208ENST00000569066 PTPREP23469 700 aa11.05□□□□□ -0.64
UBR1-208ENST00000569066 DDX11L8A8MPP1 907 aa11.03□□□□□ -0.64
UBR1-208ENST00000569066 PNMA3Q9UL41 463 aa11.03□□□□□ -0.64
UBR1-208ENST00000569066 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.02□□□□□ -0.64
UBR1-208ENST00000569066 SPIRE2Q8WWL2 714 aa11.02□□□□□ -0.64
UBR1-208ENST00000569066 KCNK17Q96T54 332 aa11.02□□□□□ -0.64
UBR1-208ENST00000569066 TRIM6-TRIM34B2RNG4 842 aa11.02□□□□□ -0.65
UBR1-208ENST00000569066 CD46P15529 392 aa11.02□□□□□ -0.65
UBR1-208ENST00000569066 TATDN2Q93075 761 aa11.01□□□□□ -0.65
UBR1-208ENST00000569066 CSPP1Q1MSJ5 1256 aa11.01□□□□□ -0.65
UBR1-208ENST00000569066 HOXB1P14653 301 aaPredicted RBP11□□□□□ -0.65
UBR1-208ENST00000569066 RFC5P40937 340 aa11□□□□□ -0.65
UBR1-208ENST00000569066 TMEM134Q9H6X4 195 aa11□□□□□ -0.65
UBR1-208ENST00000569066 SNRKQ9NRH2 765 aa11□□□□□ -0.65
UBR1-208ENST00000569066 DNAJB2P25686 324 aa10.98□□□□□ -0.65
UBR1-208ENST00000569066 PSDA5PKW4 1024 aaPredicted RBP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms