RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 PTPN23Q9H3S7 1636 aa23.3■■□□□ 1.32
VPS39-210ENST00000568357 CNTLNQ9NXG0 1405 aa23.29■■□□□ 1.32
VPS39-210ENST00000568357 TCOF1Q13428 1488 aaKnown RBP23.29■■□□□ 1.32
VPS39-210ENST00000568357 PPP6R1Q9UPN7 881 aa23.28■■□□□ 1.32
VPS39-210ENST00000568357 ZMYM3Q14202 1370 aa23.27■■□□□ 1.32
VPS39-210ENST00000568357 MAST1Q9Y2H9 1570 aa23.27■■□□□ 1.32
VPS39-210ENST00000568357 ZNF335Q9H4Z2 1342 aaPredicted RBP23.26■■□□□ 1.31
VPS39-210ENST00000568357 MROH2AA6NES4 1674 aa23.25■■□□□ 1.31
VPS39-210ENST00000568357 UBAP1LF5GYI3 381 aa23.25■■□□□ 1.31
VPS39-210ENST00000568357 DAPK1P53355 1430 aa23.25■■□□□ 1.31
VPS39-210ENST00000568357 FAM50AQ14320 339 aaKnown RBP23.24■■□□□ 1.31
VPS39-210ENST00000568357 MED1Q15648 1581 aaPredicted RBP23.23■■□□□ 1.31
VPS39-210ENST00000568357 ZNF142P52746 1687 aaPredicted RBP23.22■■□□□ 1.31
VPS39-210ENST00000568357 RRP7BPQ9NSQ0 103 aa23.22■■□□□ 1.31
VPS39-210ENST00000568357 CHIC2Q9UKJ5 165 aa23.22■■□□□ 1.31
VPS39-210ENST00000568357 MYO3AQ8NEV4 1616 aa23.22■■□□□ 1.31
VPS39-210ENST00000568357 NCKAP5LQ9HCH0 1330 aa23.21■■□□□ 1.31
VPS39-210ENST00000568357 SHANK2Q9UPX8 1470 aa23.19■■□□□ 1.3
VPS39-210ENST00000568357 NPATQ14207 1427 aa23.18■■□□□ 1.3
VPS39-210ENST00000568357 DNMT1P26358 1616 aaKnown RBP23.18■■□□□ 1.3
VPS39-210ENST00000568357 KIF15Q9NS87 1388 aa23.17■■□□□ 1.3
VPS39-210ENST00000568357 WASHC2CQ9Y4E1 1318 aa23.17■■□□□ 1.3
VPS39-210ENST00000568357 CLTCQ00610 1675 aaKnown RBP23.16■■□□□ 1.3
VPS39-210ENST00000568357 CEP170BQ9Y4F5 1589 aaPredicted RBP23.14■■□□□ 1.3
VPS39-210ENST00000568357 PLA2R1Q13018 1463 aa23.14■■□□□ 1.29
VPS39-210ENST00000568357 DUOX2Q9NRD8 1548 aa23.13■■□□□ 1.29
VPS39-210ENST00000568357 PTPRKQ15262 1439 aa23.13■■□□□ 1.29
VPS39-210ENST00000568357 ANKRD30AQ9BXX3 1397 aa23.13■■□□□ 1.29
VPS39-210ENST00000568357 CROCC2H7BZ55 1655 aa23.13■■□□□ 1.29
VPS39-210ENST00000568357 FBXO31Q5XUX0 539 aaPredicted RBP23.11■■□□□ 1.29
VPS39-210ENST00000568357 KDM5DQ9BY66 1539 aa23.08■■□□□ 1.29
VPS39-210ENST00000568357 HSPA1LP34931 641 aa23.08■■□□□ 1.29
VPS39-210ENST00000568357 ERBINQ96RT1 1412 aa23.08■■□□□ 1.28
VPS39-210ENST00000568357 RNF17Q9BXT8 1623 aaKnown RBP23.06■■□□□ 1.28
VPS39-210ENST00000568357 EIF2AK4Q9P2K8 1649 aaKnown RBP23.06■■□□□ 1.28
VPS39-210ENST00000568357 FAM135AQ9P2D6 1515 aa23.06■■□□□ 1.28
VPS39-210ENST00000568357 ADGRL2O95490 1459 aa23.05■■□□□ 1.28
VPS39-210ENST00000568357 PKD2Q13563 968 aa23.05■■□□□ 1.28
VPS39-210ENST00000568357 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.05■■□□□ 1.28
VPS39-210ENST00000568357 SCAF1Q9H7N4 1312 aaKnown RBP23.05■■□□□ 1.28
VPS39-210ENST00000568357 MROH1Q8NDA8 1641 aa23.04■■□□□ 1.28
VPS39-210ENST00000568357 POLR1AO95602 1720 aaPredicted RBP23.03■■□□□ 1.28
VPS39-210ENST00000568357 ITGAEP38570 1179 aa23.03■■□□□ 1.28
VPS39-210ENST00000568357 PZPP20742 1482 aa23.03■■□□□ 1.28
VPS39-210ENST00000568357 ABCC3O15438 1527 aa23.03■■□□□ 1.28
VPS39-210ENST00000568357 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.01■■□□□ 1.27
VPS39-210ENST00000568357 PIP4K2BP78356 416 aa23.01■■□□□ 1.27
VPS39-210ENST00000568357 NEURL4Q96JN8 1562 aa22.99■■□□□ 1.27
VPS39-210ENST00000568357 TNRQ92752 1358 aa22.99■■□□□ 1.27
VPS39-210ENST00000568357 ANKRD50Q9ULJ7 1429 aa22.97■■□□□ 1.27
VPS39-210ENST00000568357 CPS1P31327 1500 aa22.97■■□□□ 1.27
VPS39-210ENST00000568357 ALKQ9UM73 1620 aa22.97■■□□□ 1.27
VPS39-210ENST00000568357 PRDM15P57071 1507 aaPredicted RBP22.95■■□□□ 1.26
VPS39-210ENST00000568357 ROCK1Q13464 1354 aa22.95■■□□□ 1.26
VPS39-210ENST00000568357 RRBP1Q9P2E9 1410 aaKnown RBP22.95■■□□□ 1.26
VPS39-210ENST00000568357 A2ML1A8K2U0 1454 aa22.94■■□□□ 1.26
VPS39-210ENST00000568357 KANK1Q14678 1352 aa22.93■■□□□ 1.26
VPS39-210ENST00000568357 PHF23Q9BUL5 403 aaPredicted RBP22.92■■□□□ 1.26
VPS39-210ENST00000568357 ZC3H13Q5T200 1668 aaKnown RBP22.92■■□□□ 1.26
VPS39-210ENST00000568357 DEPDC5O75140 1603 aa22.92■■□□□ 1.26
VPS39-210ENST00000568357 TOM1O60784 492 aa22.91■■□□□ 1.26
VPS39-210ENST00000568357 CEP152O94986 1710 aa22.9■■□□□ 1.26
VPS39-210ENST00000568357 ARHGAP31Q2M1Z3 1444 aa22.9■■□□□ 1.26
VPS39-210ENST00000568357 VWDEQ8N2E2 1590 aa22.89■■□□□ 1.26
VPS39-210ENST00000568357 ERVK-7P63135 1459 aa22.89■■□□□ 1.25
VPS39-210ENST00000568357 NLRP1Q9C000 1473 aa22.85■■□□□ 1.25
VPS39-210ENST00000568357 LMTK2Q8IWU2 1503 aa22.85■■□□□ 1.25
VPS39-210ENST00000568357 THEMISQ8N1K5 641 aaPredicted RBP22.84■■□□□ 1.25
VPS39-210ENST00000568357 STRCP1A6NGW2 1772 aa22.81■■□□□ 1.24
VPS39-210ENST00000568357 SENP3Q9H4L4 574 aaPredicted RBP22.8■■□□□ 1.24
VPS39-210ENST00000568357 UGGT1Q9NYU2 1555 aa22.8■■□□□ 1.24
VPS39-210ENST00000568357 IDI1Q13907 227 aa22.77■■□□□ 1.24
VPS39-210ENST00000568357 ANKLE2Q86XL3 938 aa22.77■■□□□ 1.24
VPS39-210ENST00000568357 NUP155O75694 1391 aa22.76■■□□□ 1.23
VPS39-210ENST00000568357 CFAP65Q6ZU64 1925 aaKnown RBP22.76■■□□□ 1.23
VPS39-210ENST00000568357 IQGAP1P46940 1657 aa22.76■■□□□ 1.23
VPS39-210ENST00000568357 EFCAB6Q5THR3 1501 aa22.76■■□□□ 1.23
VPS39-210ENST00000568357 UNC13BO14795 1591 aa22.75■■□□□ 1.23
VPS39-210ENST00000568357 NOS1P29475 1434 aa22.74■■□□□ 1.23
VPS39-210ENST00000568357 NAIPQ13075 1403 aa22.74■■□□□ 1.23
VPS39-210ENST00000568357 SYNMO15061 1565 aa22.73■■□□□ 1.23
VPS39-210ENST00000568357 NPHP4O75161 1426 aaPredicted RBP22.73■■□□□ 1.23
VPS39-210ENST00000568357 MED14O60244 1454 aa22.73■■□□□ 1.23
VPS39-210ENST00000568357 RGS17Q9UGC6 210 aaPredicted RBP22.71■■□□□ 1.23
VPS39-210ENST00000568357 LRRC7Q96NW7 1537 aa22.71■■□□□ 1.23
VPS39-210ENST00000568357 SLC52A1Q9NWF4 448 aa22.7■■□□□ 1.22
VPS39-210ENST00000568357 RPRD2Q5VT52 1461 aaKnown RBP22.7■■□□□ 1.22
VPS39-210ENST00000568357 STAG3Q9UJ98 1225 aa22.69■■□□□ 1.22
VPS39-210ENST00000568357 LTKP29376 864 aa22.68■■□□□ 1.22
VPS39-210ENST00000568357 TET3O43151 1660 aa22.68■■□□□ 1.22
VPS39-210ENST00000568357 HFM1A2PYH4 1435 aa22.66■■□□□ 1.22
VPS39-210ENST00000568357 UBR1Q8IWV7 1749 aa22.66■■□□□ 1.22
VPS39-210ENST00000568357 TXNDC2Q86VQ3 553 aa22.66■■□□□ 1.22
VPS39-210ENST00000568357 IQGAP3Q86VI3 1631 aa22.66■■□□□ 1.22
VPS39-210ENST00000568357 PIK3C2BO00750 1634 aa22.65■■□□□ 1.22
VPS39-210ENST00000568357 ARHGAP23Q9P227 1491 aa22.64■■□□□ 1.21
VPS39-210ENST00000568357 TMEM2Q9UHN6 1383 aa22.63■■□□□ 1.21
VPS39-210ENST00000568357 XIRP1Q702N8 1843 aaKnown RBP22.63■■□□□ 1.21
VPS39-210ENST00000568357 SLIT1O75093 1534 aa22.62■■□□□ 1.21
VPS39-210ENST00000568357 EID1Q9Y6B2 187 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms