RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 SCUBE2Q9NQ36 999 aa10.38□□□□□ -0.75
VPS39-209ENST00000568029 IFT140Q96RY7 1462 aa10.37□□□□□ -0.75
VPS39-209ENST00000568029 ANO8Q9HCE9 1232 aaPredicted RBP10.36□□□□□ -0.75
VPS39-209ENST00000568029 EVI5O60447 810 aa10.35□□□□□ -0.75
VPS39-209ENST00000568029 POTEGQ6S5H5 508 aa10.35□□□□□ -0.75
VPS39-209ENST00000568029 RSF1Q96T23 1441 aaPredicted RBP10.33□□□□□ -0.76
VPS39-209ENST00000568029 TOPBP1Q92547 1522 aa10.33□□□□□ -0.76
VPS39-209ENST00000568029 ZMYND10O75800 440 aa10.33□□□□□ -0.76
VPS39-209ENST00000568029 TARBP1Q13395 1621 aaKnown RBP10.33□□□□□ -0.76
VPS39-209ENST00000568029 CLASP1Q7Z460 1538 aa10.33□□□□□ -0.76
VPS39-209ENST00000568029 AQRO60306 1485 aaKnown RBP eCLIP10.32□□□□□ -0.76
VPS39-209ENST00000568029 RBM26Q5T8P6 1007 aaKnown RBP10.32□□□□□ -0.76
VPS39-209ENST00000568029 GPIHBP1Q8IV16 184 aa10.31□□□□□ -0.76
VPS39-209ENST00000568029 PCDHGA4Q9Y5G9 962 aa10.31□□□□□ -0.76
VPS39-209ENST00000568029 OSBPP22059 807 aa10.3□□□□□ -0.76
VPS39-209ENST00000568029 DOK7Q18PE1 504 aa10.3□□□□□ -0.76
VPS39-209ENST00000568029 ZSWIM6Q9HCJ5 1215 aa10.3□□□□□ -0.76
VPS39-209ENST00000568029 KDM4FA0A1W2PPD8 638 aa10.29□□□□□ -0.76
VPS39-209ENST00000568029 BARGINQ6ZT62 677 aa10.29□□□□□ -0.76
VPS39-209ENST00000568029 SLAIN1Q8ND83 568 aa10.29□□□□□ -0.76
VPS39-209ENST00000568029 PCDH10Q9P2E7 1040 aa10.29□□□□□ -0.76
VPS39-209ENST00000568029 GRXCR2A6NFK2 248 aa10.28□□□□□ -0.76
VPS39-209ENST00000568029 TOP2AP11388 1531 aaKnown RBP10.28□□□□□ -0.76
VPS39-209ENST00000568029 EPAS1Q99814 870 aa10.27□□□□□ -0.77
VPS39-209ENST00000568029 RIMBP2O15034 1052 aa10.26□□□□□ -0.77
VPS39-209ENST00000568029 PHF14O94880 888 aa10.26□□□□□ -0.77
VPS39-209ENST00000568029 HOXB3P14651 431 aaPredicted RBP10.26□□□□□ -0.77
VPS39-209ENST00000568029 DDX12PQ92771 950 aa10.25□□□□□ -0.77
VPS39-209ENST00000568029 FAM163AQ96GL9 167 aaPredicted RBP10.25□□□□□ -0.77
VPS39-209ENST00000568029 DNMBPQ6XZF7 1577 aa10.24□□□□□ -0.77
VPS39-209ENST00000568029 GPR37O15354 613 aa10.24□□□□□ -0.77
VPS39-209ENST00000568029 SNAPC4Q5SXM2 1469 aa10.23□□□□□ -0.77
VPS39-209ENST00000568029 ERCC6L2Q5T890 1561 aa10.22□□□□□ -0.77
VPS39-209ENST00000568029 SNPHO15079 494 aa10.22□□□□□ -0.77
VPS39-209ENST00000568029 JPH4Q96JJ6 628 aa10.22□□□□□ -0.77
VPS39-209ENST00000568029 RAD54L2Q9Y4B4 1467 aa10.21□□□□□ -0.78
VPS39-209ENST00000568029 POLA1P09884 1462 aaPredicted RBP10.2□□□□□ -0.78
VPS39-209ENST00000568029 EN1Q05925 392 aaPredicted RBP10.2□□□□□ -0.78
VPS39-209ENST00000568029 LCE2DQ5TA82 110 aaPredicted RBP10.2□□□□□ -0.78
VPS39-209ENST00000568029 GPR153Q6NV75 609 aa10.2□□□□□ -0.78
VPS39-209ENST00000568029 FBXW7Q969H0 707 aa10.2□□□□□ -0.78
VPS39-209ENST00000568029 KIF13AQ9H1H9 1805 aa10.2□□□□□ -0.78
VPS39-209ENST00000568029 SLC24A3Q9HC58 644 aa10.2□□□□□ -0.78
VPS39-209ENST00000568029 NUTM2FA1L443 756 aa10.19□□□□□ -0.78
VPS39-209ENST00000568029 FCHSD2O94868 740 aa10.19□□□□□ -0.78
VPS39-209ENST00000568029 TYW1BQ6NUM6 668 aa10.19□□□□□ -0.78
VPS39-209ENST00000568029 SYNJ1O43426 1573 aa10.18□□□□□ -0.78
VPS39-209ENST00000568029 GAPVD1Q14C86 1478 aa10.18□□□□□ -0.78
VPS39-209ENST00000568029 PRIM1P49642 420 aaKnown RBP10.18□□□□□ -0.78
VPS39-209ENST00000568029 FOSBP53539 338 aa10.18□□□□□ -0.78
VPS39-209ENST00000568029 HIC1Q14526 733 aa10.18□□□□□ -0.78
VPS39-209ENST00000568029 AK7Q96M32 723 aa10.18□□□□□ -0.78
VPS39-209ENST00000568029 PCDHGA10Q9Y5H3 936 aa10.18□□□□□ -0.78
VPS39-209ENST00000568029 ZNF710Q8N1W2 664 aa10.17□□□□□ -0.78
VPS39-209ENST00000568029 TDRD9Q8NDG6 1382 aaKnown RBP10.16□□□□□ -0.78
VPS39-209ENST00000568029 GNPATO15228 680 aa10.16□□□□□ -0.78
VPS39-209ENST00000568029 PTGDRQ13258 359 aa10.16□□□□□ -0.78
VPS39-209ENST00000568029 ARSIQ5FYB1 569 aa10.16□□□□□ -0.78
VPS39-209ENST00000568029 CCDC88BA6NC98 1476 aa10.16□□□□□ -0.78
VPS39-209ENST00000568029 MINK1Q8N4C8 1332 aaPredicted RBP10.15□□□□□ -0.78
VPS39-209ENST00000568029 PSDA5PKW4 1024 aaPredicted RBP10.15□□□□□ -0.78
VPS39-209ENST00000568029 NUDT7P0C024 238 aa10.14□□□□□ -0.79
VPS39-209ENST00000568029 MAP2K5Q13163 448 aa10.14□□□□□ -0.79
VPS39-209ENST00000568029 KRI1Q8N9T8 703 aaKnown RBP10.14□□□□□ -0.79
VPS39-209ENST00000568029 MAP3K7O43318 606 aa10.12□□□□□ -0.79
VPS39-209ENST00000568029 BRPF1P55201 1214 aaPredicted RBP10.12□□□□□ -0.79
VPS39-209ENST00000568029 ZDHHC16Q969W1 377 aa10.12□□□□□ -0.79
VPS39-209ENST00000568029 PBRM1Q86U86 1689 aa10.12□□□□□ -0.79
VPS39-209ENST00000568029 WDR97A6NE52 1622 aa10.11□□□□□ -0.79
VPS39-209ENST00000568029 HOXB1P14653 301 aaPredicted RBP10.11□□□□□ -0.79
VPS39-209ENST00000568029 CERKQ8TCT0 537 aa10.11□□□□□ -0.79
VPS39-209ENST00000568029 ABCC8Q09428 1581 aa10.1□□□□□ -0.79
VPS39-209ENST00000568029 IRF6O14896 467 aa10.1□□□□□ -0.79
VPS39-209ENST00000568029 ZNF454Q8N9F8 522 aa10.1□□□□□ -0.79
VPS39-209ENST00000568029 KHSRPQ92945 711 aaKnown RBP eCLIP10.1□□□□□ -0.79
VPS39-209ENST00000568029 NPDC1Q9NQX5 325 aaPredicted RBP10.1□□□□□ -0.79
VPS39-209ENST00000568029 TRIM66O15016 1216 aa10.08□□□□□ -0.8
VPS39-209ENST00000568029 SYNJ2O15056 1496 aa10.08□□□□□ -0.8
VPS39-209ENST00000568029 FGD5Q6ZNL6 1462 aa10.08□□□□□ -0.8
VPS39-209ENST00000568029 MAGI1Q96QZ7 1491 aaPredicted RBP10.08□□□□□ -0.8
VPS39-209ENST00000568029 TMEM132AQ24JP5 1023 aa10.07□□□□□ -0.8
VPS39-209ENST00000568029 C6orf132Q5T0Z8 1188 aa10.07□□□□□ -0.8
VPS39-209ENST00000568029 RBM33Q96EV2 1170 aaKnown RBP10.07□□□□□ -0.8
VPS39-209ENST00000568029 RBM27Q9P2N5 1060 aaKnown RBP10.07□□□□□ -0.8
VPS39-209ENST00000568029 LHX6Q9UPM6 363 aa10.07□□□□□ -0.8
VPS39-209ENST00000568029 SOGA1O94964 1423 aa10.07□□□□□ -0.8
VPS39-209ENST00000568029 SUPT5HO00267 1087 aaKnown RBP10.06□□□□□ -0.8
VPS39-209ENST00000568029 TSR1Q2NL82 804 aaKnown RBP10.06□□□□□ -0.8
VPS39-209ENST00000568029 PPP4R3BQ5MIZ7 849 aa10.06□□□□□ -0.8
VPS39-209ENST00000568029 CDHR5Q9HBB8 845 aa10.06□□□□□ -0.8
VPS39-209ENST00000568029 NEUROD2Q15784 382 aa10.05□□□□□ -0.8
VPS39-209ENST00000568029 CHMP7Q8WUX9 453 aaPredicted RBP10.05□□□□□ -0.8
VPS39-209ENST00000568029 CCDC102AQ96A19 550 aa10.05□□□□□ -0.8
VPS39-209ENST00000568029 CEP170Q5SW79 1584 aa10.05□□□□□ -0.8
VPS39-209ENST00000568029 AMHR2Q16671 573 aa10.04□□□□□ -0.8
VPS39-209ENST00000568029 ADAM33Q9BZ11 813 aa10.04□□□□□ -0.8
VPS39-209ENST00000568029 BCL2L12Q9HB09 334 aa10.04□□□□□ -0.8
VPS39-209ENST00000568029 DAXXQ9UER7 740 aaPredicted RBP10.04□□□□□ -0.8
VPS39-209ENST00000568029 GRIN2BQ13224 1484 aa10.04□□□□□ -0.8
VPS39-209ENST00000568029 FECHP22830 423 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms