RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 NCKAP5LQ9HCH0 1330 aa25.33■■□□□ 1.65
CLN3-229ENST00000567963 WASHC2CQ9Y4E1 1318 aa25.33■■□□□ 1.65
CLN3-229ENST00000567963 FAM135AQ9P2D6 1515 aa25.32■■□□□ 1.64
CLN3-229ENST00000567963 KDM5DQ9BY66 1539 aa25.32■■□□□ 1.64
CLN3-229ENST00000567963 MAST1Q9Y2H9 1570 aa25.31■■□□□ 1.64
CLN3-229ENST00000567963 PLA2R1Q13018 1463 aa25.31■■□□□ 1.64
CLN3-229ENST00000567963 FBXO31Q5XUX0 539 aaPredicted RBP25.3■■□□□ 1.64
CLN3-229ENST00000567963 APLP2Q06481 763 aa25.29■■□□□ 1.64
CLN3-229ENST00000567963 PKD2Q13563 968 aa25.29■■□□□ 1.64
CLN3-229ENST00000567963 LTBP4Q8N2S1 1624 aa25.29■■□□□ 1.64
CLN3-229ENST00000567963 A2ML1A8K2U0 1454 aa25.28■■□□□ 1.64
CLN3-229ENST00000567963 PZPP20742 1482 aa25.28■■□□□ 1.64
CLN3-229ENST00000567963 TCOF1Q13428 1488 aaKnown RBP25.26■■□□□ 1.63
CLN3-229ENST00000567963 TNRQ92752 1358 aa25.26■■□□□ 1.63
CLN3-229ENST00000567963 DNMT1P26358 1616 aaKnown RBP25.25■■□□□ 1.63
CLN3-229ENST00000567963 RNF17Q9BXT8 1623 aaKnown RBP25.22■■□□□ 1.63
CLN3-229ENST00000567963 EIF2AK4Q9P2K8 1649 aaKnown RBP25.2■■□□□ 1.63
CLN3-229ENST00000567963 ZNF335Q9H4Z2 1342 aaPredicted RBP25.19■■□□□ 1.62
CLN3-229ENST00000567963 IQSEC2Q5JU85 1478 aa25.18■■□□□ 1.62
CLN3-229ENST00000567963 PTPN23Q9H3S7 1636 aa25.18■■□□□ 1.62
CLN3-229ENST00000567963 DUOX2Q9NRD8 1548 aa25.16■■□□□ 1.62
CLN3-229ENST00000567963 ABCC5O15440 1437 aa25.16■■□□□ 1.62
CLN3-229ENST00000567963 ABCC3O15438 1527 aa25.16■■□□□ 1.62
CLN3-229ENST00000567963 ZC3H13Q5T200 1668 aaKnown RBP25.15■■□□□ 1.62
CLN3-229ENST00000567963 NLRP1Q9C000 1473 aa25.14■■□□□ 1.62
CLN3-229ENST00000567963 SHANK2Q9UPX8 1470 aa25.14■■□□□ 1.61
CLN3-229ENST00000567963 MROH1Q8NDA8 1641 aa25.14■■□□□ 1.61
CLN3-229ENST00000567963 CROCC2H7BZ55 1655 aa25.13■■□□□ 1.61
CLN3-229ENST00000567963 THEMISQ8N1K5 641 aaPredicted RBP25.13■■□□□ 1.61
CLN3-229ENST00000567963 FGD6Q6ZV73 1430 aa25.12■■□□□ 1.61
CLN3-229ENST00000567963 KIF15Q9NS87 1388 aa25.12■■□□□ 1.61
CLN3-229ENST00000567963 RRP7BPQ9NSQ0 103 aa25.12■■□□□ 1.61
CLN3-229ENST00000567963 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.11■■□□□ 1.61
CLN3-229ENST00000567963 UGGT1Q9NYU2 1555 aa25.11■■□□□ 1.61
CLN3-229ENST00000567963 DAPK1P53355 1430 aa25.11■■□□□ 1.61
CLN3-229ENST00000567963 POLR1AO95602 1720 aaPredicted RBP25.1■■□□□ 1.61
CLN3-229ENST00000567963 ANKLE2Q86XL3 938 aa25.09■■□□□ 1.61
CLN3-229ENST00000567963 SPATA31D1Q6ZQQ2 1576 aa25.09■■□□□ 1.61
CLN3-229ENST00000567963 NEURL4Q96JN8 1562 aa25.09■■□□□ 1.61
CLN3-229ENST00000567963 ERBINQ96RT1 1412 aa25.08■■□□□ 1.61
CLN3-229ENST00000567963 CEP152O94986 1710 aa25.08■■□□□ 1.6
CLN3-229ENST00000567963 ERVK-7P63135 1459 aa25.06■■□□□ 1.6
CLN3-229ENST00000567963 CFAP65Q6ZU64 1925 aaKnown RBP25.04■■□□□ 1.6
CLN3-229ENST00000567963 PRDM15P57071 1507 aaPredicted RBP25.03■■□□□ 1.6
CLN3-229ENST00000567963 CHIC2Q9UKJ5 165 aa25.03■■□□□ 1.6
CLN3-229ENST00000567963 MED14O60244 1454 aa25.01■■□□□ 1.59
CLN3-229ENST00000567963 ANKRD30AQ9BXX3 1397 aa25.01■■□□□ 1.59
CLN3-229ENST00000567963 DEPDC5O75140 1603 aa25.01■■□□□ 1.59
CLN3-229ENST00000567963 ARHGAP31Q2M1Z3 1444 aa25■■□□□ 1.59
CLN3-229ENST00000567963 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25■■□□□ 1.59
CLN3-229ENST00000567963 UBAP1LF5GYI3 381 aa24.99■■□□□ 1.59
CLN3-229ENST00000567963 NPHP4O75161 1426 aaPredicted RBP24.98■■□□□ 1.59
CLN3-229ENST00000567963 CPS1P31327 1500 aa24.95■■□□□ 1.59
CLN3-229ENST00000567963 KANK1Q14678 1352 aa24.95■■□□□ 1.58
CLN3-229ENST00000567963 UBR1Q8IWV7 1749 aa24.94■■□□□ 1.58
CLN3-229ENST00000567963 FAM50AQ14320 339 aaKnown RBP24.94■■□□□ 1.58
CLN3-229ENST00000567963 VWDEQ8N2E2 1590 aa24.93■■□□□ 1.58
CLN3-229ENST00000567963 IQGAP1P46940 1657 aa24.93■■□□□ 1.58
CLN3-229ENST00000567963 ADGRL2O95490 1459 aa24.92■■□□□ 1.58
CLN3-229ENST00000567963 LMTK2Q8IWU2 1503 aa24.9■■□□□ 1.58
CLN3-229ENST00000567963 DISP3Q9P2K9 1392 aa24.89■■□□□ 1.57
CLN3-229ENST00000567963 SLIT1O75093 1534 aa24.86■■□□□ 1.57
CLN3-229ENST00000567963 LTKP29376 864 aa24.86■■□□□ 1.57
CLN3-229ENST00000567963 ARHGAP23Q9P227 1491 aa24.86■■□□□ 1.57
CLN3-229ENST00000567963 SCAF11Q99590 1463 aaKnown RBP24.85■■□□□ 1.57
CLN3-229ENST00000567963 TOM1O60784 492 aa24.85■■□□□ 1.57
CLN3-229ENST00000567963 TXNDC2Q86VQ3 553 aa24.85■■□□□ 1.57
CLN3-229ENST00000567963 PIK3C2BO00750 1634 aa24.84■■□□□ 1.57
CLN3-229ENST00000567963 ANKRD50Q9ULJ7 1429 aa24.83■■□□□ 1.56
CLN3-229ENST00000567963 IDI1Q13907 227 aa24.83■■□□□ 1.56
CLN3-229ENST00000567963 STRCP1A6NGW2 1772 aa24.82■■□□□ 1.56
CLN3-229ENST00000567963 STAG3Q9UJ98 1225 aa24.82■■□□□ 1.56
CLN3-229ENST00000567963 EID1Q9Y6B2 187 aa24.82■■□□□ 1.56
CLN3-229ENST00000567963 PIP4K2BP78356 416 aa24.8■■□□□ 1.56
CLN3-229ENST00000567963 EFCAB6Q5THR3 1501 aa24.8■■□□□ 1.56
CLN3-229ENST00000567963 TMEM2Q9UHN6 1383 aa24.79■■□□□ 1.56
CLN3-229ENST00000567963 NOS1P29475 1434 aa24.79■■□□□ 1.56
CLN3-229ENST00000567963 SCAF1Q9H7N4 1312 aaKnown RBP24.79■■□□□ 1.56
CLN3-229ENST00000567963 KDM5AP29375 1690 aaKnown RBP24.79■■□□□ 1.56
CLN3-229ENST00000567963 SYNMO15061 1565 aa24.78■■□□□ 1.56
CLN3-229ENST00000567963 LRRC7Q96NW7 1537 aa24.77■■□□□ 1.56
CLN3-229ENST00000567963 ILDR2Q71H61 639 aa24.77■■□□□ 1.56
CLN3-229ENST00000567963 SLC52A1Q9NWF4 448 aa24.75■■□□□ 1.55
CLN3-229ENST00000567963 RPRD2Q5VT52 1461 aaKnown RBP24.73■■□□□ 1.55
CLN3-229ENST00000567963 HSPA1LP34931 641 aa24.73■■□□□ 1.55
CLN3-229ENST00000567963 ALKQ9UM73 1620 aa24.72■■□□□ 1.55
CLN3-229ENST00000567963 ROCK1Q13464 1354 aa24.71■■□□□ 1.55
CLN3-229ENST00000567963 TET3O43151 1660 aa24.69■■□□□ 1.54
CLN3-229ENST00000567963 PPARGC1BQ86YN6 1023 aaKnown RBP24.69■■□□□ 1.54
CLN3-229ENST00000567963 ADGRB3O60242 1522 aa24.68■■□□□ 1.54
CLN3-229ENST00000567963 UNC13BO14795 1591 aa24.67■■□□□ 1.54
CLN3-229ENST00000567963 GCC2Q8IWJ2 1684 aa24.65■■□□□ 1.54
CLN3-229ENST00000567963 ITGAEP38570 1179 aa24.64■■□□□ 1.53
CLN3-229ENST00000567963 SLC26A8Q96RN1 970 aa24.63■■□□□ 1.53
CLN3-229ENST00000567963 XIRP1Q702N8 1843 aaKnown RBP24.62■■□□□ 1.53
CLN3-229ENST00000567963 KCNA6P17658 529 aa24.61■■□□□ 1.53
CLN3-229ENST00000567963 E9PCH4 1651 aa24.6■■□□□ 1.53
CLN3-229ENST00000567963 SOCS7O14512 581 aa24.59■■□□□ 1.53
CLN3-229ENST00000567963 MYO5BQ9ULV0 1848 aa24.59■■□□□ 1.53
CLN3-229ENST00000567963 IQGAP3Q86VI3 1631 aa24.59■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms