RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 CLTCQ00610 1675 aaKnown RBP28.86■■■□□ 2.21
CLN3-227ENST00000567495 KDM5DQ9BY66 1539 aa28.85■■■□□ 2.21
CLN3-227ENST00000567495 FAM50AQ14320 339 aaKnown RBP28.85■■■□□ 2.21
CLN3-227ENST00000567495 RRP7BPQ9NSQ0 103 aa28.85■■■□□ 2.21
CLN3-227ENST00000567495 ANKRD30AQ9BXX3 1397 aa28.85■■■□□ 2.21
CLN3-227ENST00000567495 DNMT1P26358 1616 aaKnown RBP28.84■■■□□ 2.21
CLN3-227ENST00000567495 DMRT2Q9Y5R5 561 aa28.84■■■□□ 2.21
CLN3-227ENST00000567495 EIF2AK4Q9P2K8 1649 aaKnown RBP28.8■■■□□ 2.2
CLN3-227ENST00000567495 ERBINQ96RT1 1412 aa28.8■■■□□ 2.2
CLN3-227ENST00000567495 CHIC2Q9UKJ5 165 aa28.79■■■□□ 2.2
CLN3-227ENST00000567495 CROCC2H7BZ55 1655 aa28.77■■■□□ 2.2
CLN3-227ENST00000567495 RNF17Q9BXT8 1623 aaKnown RBP28.77■■■□□ 2.2
CLN3-227ENST00000567495 PZPP20742 1482 aa28.77■■■□□ 2.2
CLN3-227ENST00000567495 NCOA1Q15788 1441 aa28.77■■■□□ 2.2
CLN3-227ENST00000567495 FBXO31Q5XUX0 539 aaPredicted RBP28.73■■■□□ 2.19
CLN3-227ENST00000567495 TNRQ92752 1358 aa28.73■■■□□ 2.19
CLN3-227ENST00000567495 ADGRL2O95490 1459 aa28.72■■■□□ 2.19
CLN3-227ENST00000567495 ABCC3O15438 1527 aa28.7■■■□□ 2.19
CLN3-227ENST00000567495 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.68■■■□□ 2.18
CLN3-227ENST00000567495 KANK1Q14678 1352 aa28.67■■■□□ 2.18
CLN3-227ENST00000567495 PPARGC1BQ86YN6 1023 aaKnown RBP28.67■■■□□ 2.18
CLN3-227ENST00000567495 PTPRTO14522 1441 aa28.67■■■□□ 2.18
CLN3-227ENST00000567495 ZC3H13Q5T200 1668 aaKnown RBP28.66■■■□□ 2.18
CLN3-227ENST00000567495 A2ML1A8K2U0 1454 aa28.66■■■□□ 2.18
CLN3-227ENST00000567495 MROH1Q8NDA8 1641 aa28.65■■■□□ 2.18
CLN3-227ENST00000567495 MYO3AQ8NEV4 1616 aa28.65■■■□□ 2.18
CLN3-227ENST00000567495 PKD2Q13563 968 aa28.65■■■□□ 2.18
CLN3-227ENST00000567495 CEP170BQ9Y4F5 1589 aaPredicted RBP28.65■■■□□ 2.18
CLN3-227ENST00000567495 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.64■■■□□ 2.18
CLN3-227ENST00000567495 PRDM15P57071 1507 aaPredicted RBP28.64■■■□□ 2.17
CLN3-227ENST00000567495 PLA2R1Q13018 1463 aa28.63■■■□□ 2.17
CLN3-227ENST00000567495 CAMSAP1Q5T5Y3 1602 aa28.62■■■□□ 2.17
CLN3-227ENST00000567495 NLRP1Q9C000 1473 aa28.62■■■□□ 2.17
CLN3-227ENST00000567495 ZNF142P52746 1687 aaPredicted RBP28.61■■■□□ 2.17
CLN3-227ENST00000567495 STRCQ7RTU9 1775 aa28.61■■■□□ 2.17
CLN3-227ENST00000567495 ILDR1Q86SU0 546 aaPredicted RBP28.61■■■□□ 2.17
CLN3-227ENST00000567495 ROCK1Q13464 1354 aa28.61■■■□□ 2.17
CLN3-227ENST00000567495 ARHGAP31Q2M1Z3 1444 aa28.6■■■□□ 2.17
CLN3-227ENST00000567495 ANKRD50Q9ULJ7 1429 aa28.6■■■□□ 2.17
CLN3-227ENST00000567495 THEMISQ8N1K5 641 aaPredicted RBP28.58■■■□□ 2.17
CLN3-227ENST00000567495 DEPDC5O75140 1603 aa28.56■■■□□ 2.16
CLN3-227ENST00000567495 ERVK-7P63135 1459 aa28.56■■■□□ 2.16
CLN3-227ENST00000567495 SPATA31D1Q6ZQQ2 1576 aa28.55■■■□□ 2.16
CLN3-227ENST00000567495 NCKAP5LQ9HCH0 1330 aa28.55■■■□□ 2.16
CLN3-227ENST00000567495 FBXO41Q8TF61 875 aa28.55■■■□□ 2.16
CLN3-227ENST00000567495 CERKQ8TCT0 537 aa28.53■■■□□ 2.16
CLN3-227ENST00000567495 LMTK2Q8IWU2 1503 aa28.52■■■□□ 2.16
CLN3-227ENST00000567495 ITGAEP38570 1179 aa28.5■■■□□ 2.15
CLN3-227ENST00000567495 RRBP1Q9P2E9 1410 aaKnown RBP28.5■■■□□ 2.15
CLN3-227ENST00000567495 VWDEQ8N2E2 1590 aa28.5■■■□□ 2.15
CLN3-227ENST00000567495 ANKLE2Q86XL3 938 aa28.49■■■□□ 2.15
CLN3-227ENST00000567495 CEP152O94986 1710 aa28.48■■■□□ 2.15
CLN3-227ENST00000567495 UGGT1Q9NYU2 1555 aa28.47■■■□□ 2.15
CLN3-227ENST00000567495 RPRD2Q5VT52 1461 aaKnown RBP28.39■■■□□ 2.13
CLN3-227ENST00000567495 EFCAB6Q5THR3 1501 aa28.38■■■□□ 2.13
CLN3-227ENST00000567495 SLC52A1Q9NWF4 448 aa28.36■■■□□ 2.13
CLN3-227ENST00000567495 NOS1P29475 1434 aa28.35■■■□□ 2.13
CLN3-227ENST00000567495 STAG3Q9UJ98 1225 aa28.34■■■□□ 2.13
CLN3-227ENST00000567495 IDI1Q13907 227 aa28.33■■■□□ 2.13
CLN3-227ENST00000567495 MED14O60244 1454 aa28.33■■■□□ 2.13
CLN3-227ENST00000567495 UNC13BO14795 1591 aa28.33■■■□□ 2.12
CLN3-227ENST00000567495 ZNF335Q9H4Z2 1342 aaPredicted RBP28.32■■■□□ 2.12
CLN3-227ENST00000567495 NUP155O75694 1391 aa28.32■■■□□ 2.12
CLN3-227ENST00000567495 LTBP4Q8N2S1 1624 aa28.32■■■□□ 2.12
CLN3-227ENST00000567495 NPHP4O75161 1426 aaPredicted RBP28.31■■■□□ 2.12
CLN3-227ENST00000567495 CFAP65Q6ZU64 1925 aaKnown RBP28.3■■■□□ 2.12
CLN3-227ENST00000567495 NEURL4Q96JN8 1562 aa28.29■■■□□ 2.12
CLN3-227ENST00000567495 EID1Q9Y6B2 187 aa28.29■■■□□ 2.12
CLN3-227ENST00000567495 IQSEC2Q5JU85 1478 aa28.27■■■□□ 2.12
CLN3-227ENST00000567495 TET3O43151 1660 aa28.27■■■□□ 2.12
CLN3-227ENST00000567495 TXNDC2Q86VQ3 553 aa28.27■■■□□ 2.12
CLN3-227ENST00000567495 SLIT1O75093 1534 aa28.26■■■□□ 2.11
CLN3-227ENST00000567495 ARHGAP23Q9P227 1491 aa28.26■■■□□ 2.11
CLN3-227ENST00000567495 POLR1AO95602 1720 aaPredicted RBP28.26■■■□□ 2.11
CLN3-227ENST00000567495 TMEM2Q9UHN6 1383 aa28.25■■■□□ 2.11
CLN3-227ENST00000567495 UBR1Q8IWV7 1749 aa28.25■■■□□ 2.11
CLN3-227ENST00000567495 SCAF11Q99590 1463 aaKnown RBP28.25■■■□□ 2.11
CLN3-227ENST00000567495 NAIPQ13075 1403 aa28.23■■■□□ 2.11
CLN3-227ENST00000567495 SYNMO15061 1565 aa28.23■■■□□ 2.11
CLN3-227ENST00000567495 LTKP29376 864 aa28.22■■■□□ 2.11
CLN3-227ENST00000567495 IQGAP3Q86VI3 1631 aa28.21■■■□□ 2.11
CLN3-227ENST00000567495 KDM5AP29375 1690 aaKnown RBP28.2■■■□□ 2.11
CLN3-227ENST00000567495 PIK3C2BO00750 1634 aa28.2■■■□□ 2.1
CLN3-227ENST00000567495 HFM1A2PYH4 1435 aa28.19■■■□□ 2.1
CLN3-227ENST00000567495 GCC2Q8IWJ2 1684 aa28.18■■■□□ 2.1
CLN3-227ENST00000567495 HDGFP51858 240 aaKnown RBP28.16■■■□□ 2.1
CLN3-227ENST00000567495 ADGRB3O60242 1522 aa28.15■■■□□ 2.1
CLN3-227ENST00000567495 CPS1P31327 1500 aa28.15■■■□□ 2.1
CLN3-227ENST00000567495 IQGAP1P46940 1657 aa28.15■■■□□ 2.1
CLN3-227ENST00000567495 E9PCH4 1651 aa28.1■■■□□ 2.09
CLN3-227ENST00000567495 TRIM52Q96A61 297 aa28.08■■■□□ 2.09
CLN3-227ENST00000567495 CHGAP10645 457 aaKnown RBP28.07■■■□□ 2.08
CLN3-227ENST00000567495 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.07■■■□□ 2.08
CLN3-227ENST00000567495 UBAP1LF5GYI3 381 aa28.05■■■□□ 2.08
CLN3-227ENST00000567495 ACIN1Q9UKV3 1341 aaKnown RBP28.03■■■□□ 2.08
CLN3-227ENST00000567495 PPP1R15AO75807 674 aaPredicted RBP28.03■■■□□ 2.08
CLN3-227ENST00000567495 ZFYVE9O95405 1425 aa28.02■■■□□ 2.08
CLN3-227ENST00000567495 RIMS2Q9UQ26 1411 aa28.02■■■□□ 2.08
CLN3-227ENST00000567495 TMEM131LA2VDJ0 1609 aa28.01■■■□□ 2.07
CLN3-227ENST00000567495 BCANQ96GW7 911 aa28■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms