RNA–Protein interactions for RNA: ENST00000566723.1

SMPD3-208, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 524 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-208ENST00000566723 KIF3BO15066 747 aa23.98■■□□□ 1.43
SMPD3-208ENST00000566723 TSPY4P0CV99 314 aa23.98■■□□□ 1.43
SMPD3-208ENST00000566723 TSPY10P0CW01 314 aa23.98■■□□□ 1.43
SMPD3-208ENST00000566723 RNF17Q9BXT8 1623 aaKnown RBP23.97■■□□□ 1.43
SMPD3-208ENST00000566723 EIF2AK4Q9P2K8 1649 aaKnown RBP23.95■■□□□ 1.43
SMPD3-208ENST00000566723 CROCC2H7BZ55 1655 aa23.95■■□□□ 1.42
SMPD3-208ENST00000566723 PLA2R1Q13018 1463 aa23.94■■□□□ 1.42
SMPD3-208ENST00000566723 PZPP20742 1482 aa23.94■■□□□ 1.42
SMPD3-208ENST00000566723 ZC3H13Q5T200 1668 aaKnown RBP23.92■■□□□ 1.42
SMPD3-208ENST00000566723 PTPN23Q9H3S7 1636 aa23.92■■□□□ 1.42
SMPD3-208ENST00000566723 A2ML1A8K2U0 1454 aa23.91■■□□□ 1.42
SMPD3-208ENST00000566723 DNMT1P26358 1616 aaKnown RBP23.9■■□□□ 1.42
SMPD3-208ENST00000566723 TCOF1Q13428 1488 aaKnown RBP23.89■■□□□ 1.42
SMPD3-208ENST00000566723 APLP2Q06481 763 aa23.89■■□□□ 1.41
SMPD3-208ENST00000566723 LTBP4Q8N2S1 1624 aa23.88■■□□□ 1.41
SMPD3-208ENST00000566723 SHANK2Q9UPX8 1470 aa23.87■■□□□ 1.41
SMPD3-208ENST00000566723 WASHC2CQ9Y4E1 1318 aa23.87■■□□□ 1.41
SMPD3-208ENST00000566723 MROH1Q8NDA8 1641 aa23.87■■□□□ 1.41
SMPD3-208ENST00000566723 TNRQ92752 1358 aa23.87■■□□□ 1.41
SMPD3-208ENST00000566723 DUOX2Q9NRD8 1548 aa23.86■■□□□ 1.41
SMPD3-208ENST00000566723 POLR1AO95602 1720 aaPredicted RBP23.86■■□□□ 1.41
SMPD3-208ENST00000566723 ABCC3O15438 1527 aa23.85■■□□□ 1.41
SMPD3-208ENST00000566723 NCKAP5LQ9HCH0 1330 aa23.84■■□□□ 1.41
SMPD3-208ENST00000566723 CEP152O94986 1710 aa23.84■■□□□ 1.41
SMPD3-208ENST00000566723 PKD2Q13563 968 aa23.83■■□□□ 1.41
SMPD3-208ENST00000566723 FGD6Q6ZV73 1430 aa23.83■■□□□ 1.4
SMPD3-208ENST00000566723 FBXO31Q5XUX0 539 aaPredicted RBP23.82■■□□□ 1.4
SMPD3-208ENST00000566723 ABCC5O15440 1437 aa23.82■■□□□ 1.4
SMPD3-208ENST00000566723 IQSEC2Q5JU85 1478 aa23.81■■□□□ 1.4
SMPD3-208ENST00000566723 NLRP1Q9C000 1473 aa23.8■■□□□ 1.4
SMPD3-208ENST00000566723 DAPK1P53355 1430 aa23.79■■□□□ 1.4
SMPD3-208ENST00000566723 PRDM15P57071 1507 aaPredicted RBP23.79■■□□□ 1.4
SMPD3-208ENST00000566723 KIF15Q9NS87 1388 aa23.78■■□□□ 1.4
SMPD3-208ENST00000566723 SPATA31D1Q6ZQQ2 1576 aa23.78■■□□□ 1.4
SMPD3-208ENST00000566723 ERBINQ96RT1 1412 aa23.77■■□□□ 1.4
SMPD3-208ENST00000566723 CFAP65Q6ZU64 1925 aaKnown RBP23.77■■□□□ 1.4
SMPD3-208ENST00000566723 NEURL4Q96JN8 1562 aa23.77■■□□□ 1.4
SMPD3-208ENST00000566723 UGGT1Q9NYU2 1555 aa23.75■■□□□ 1.39
SMPD3-208ENST00000566723 DEPDC5O75140 1603 aa23.75■■□□□ 1.39
SMPD3-208ENST00000566723 ERVK-7P63135 1459 aa23.74■■□□□ 1.39
SMPD3-208ENST00000566723 ZNF335Q9H4Z2 1342 aaPredicted RBP23.73■■□□□ 1.39
SMPD3-208ENST00000566723 RRP7BPQ9NSQ0 103 aa23.69■■□□□ 1.38
SMPD3-208ENST00000566723 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.68■■□□□ 1.38
SMPD3-208ENST00000566723 UBR1Q8IWV7 1749 aa23.67■■□□□ 1.38
SMPD3-208ENST00000566723 ANKRD30AQ9BXX3 1397 aa23.66■■□□□ 1.38
SMPD3-208ENST00000566723 THEMISQ8N1K5 641 aaPredicted RBP23.66■■□□□ 1.38
SMPD3-208ENST00000566723 ARHGAP31Q2M1Z3 1444 aa23.66■■□□□ 1.38
SMPD3-208ENST00000566723 IQGAP1P46940 1657 aa23.64■■□□□ 1.38
SMPD3-208ENST00000566723 MED14O60244 1454 aa23.64■■□□□ 1.38
SMPD3-208ENST00000566723 ADGRL2O95490 1459 aa23.64■■□□□ 1.38
SMPD3-208ENST00000566723 ANKLE2Q86XL3 938 aa23.63■■□□□ 1.37
SMPD3-208ENST00000566723 VWDEQ8N2E2 1590 aa23.62■■□□□ 1.37
SMPD3-208ENST00000566723 LMTK2Q8IWU2 1503 aa23.61■■□□□ 1.37
SMPD3-208ENST00000566723 CHIC2Q9UKJ5 165 aa23.61■■□□□ 1.37
SMPD3-208ENST00000566723 NPHP4O75161 1426 aaPredicted RBP23.6■■□□□ 1.37
SMPD3-208ENST00000566723 CPS1P31327 1500 aa23.6■■□□□ 1.37
SMPD3-208ENST00000566723 KANK1Q14678 1352 aa23.6■■□□□ 1.37
SMPD3-208ENST00000566723 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.58■■□□□ 1.37
SMPD3-208ENST00000566723 FAM50AQ14320 339 aaKnown RBP23.56■■□□□ 1.36
SMPD3-208ENST00000566723 PIK3C2BO00750 1634 aa23.55■■□□□ 1.36
SMPD3-208ENST00000566723 EFCAB6Q5THR3 1501 aa23.55■■□□□ 1.36
SMPD3-208ENST00000566723 KDM5AP29375 1690 aaKnown RBP23.54■■□□□ 1.36
SMPD3-208ENST00000566723 SLIT1O75093 1534 aa23.54■■□□□ 1.36
SMPD3-208ENST00000566723 SCAF11Q99590 1463 aaKnown RBP23.52■■□□□ 1.36
SMPD3-208ENST00000566723 ARHGAP23Q9P227 1491 aa23.52■■□□□ 1.36
SMPD3-208ENST00000566723 UBAP1LF5GYI3 381 aa23.52■■□□□ 1.36
SMPD3-208ENST00000566723 STRCP1A6NGW2 1772 aa23.51■■□□□ 1.35
SMPD3-208ENST00000566723 SYNMO15061 1565 aa23.51■■□□□ 1.35
SMPD3-208ENST00000566723 ANKRD50Q9ULJ7 1429 aa23.5■■□□□ 1.35
SMPD3-208ENST00000566723 UNC13BO14795 1591 aa23.47■■□□□ 1.35
SMPD3-208ENST00000566723 TET3O43151 1660 aa23.47■■□□□ 1.35
SMPD3-208ENST00000566723 NOS1P29475 1434 aa23.46■■□□□ 1.35
SMPD3-208ENST00000566723 GCC2Q8IWJ2 1684 aa23.45■■□□□ 1.34
SMPD3-208ENST00000566723 RPRD2Q5VT52 1461 aaKnown RBP23.44■■□□□ 1.34
SMPD3-208ENST00000566723 ADGRB3O60242 1522 aa23.43■■□□□ 1.34
SMPD3-208ENST00000566723 TMEM2Q9UHN6 1383 aa23.42■■□□□ 1.34
SMPD3-208ENST00000566723 ROCK1Q13464 1354 aa23.41■■□□□ 1.34
SMPD3-208ENST00000566723 LTKP29376 864 aa23.41■■□□□ 1.34
SMPD3-208ENST00000566723 DISP3Q9P2K9 1392 aa23.4■■□□□ 1.34
SMPD3-208ENST00000566723 TXNDC2Q86VQ3 553 aa23.4■■□□□ 1.34
SMPD3-208ENST00000566723 LRRC7Q96NW7 1537 aa23.39■■□□□ 1.34
SMPD3-208ENST00000566723 MYO5BQ9ULV0 1848 aa23.39■■□□□ 1.33
SMPD3-208ENST00000566723 STAG3Q9UJ98 1225 aa23.39■■□□□ 1.33
SMPD3-208ENST00000566723 EID1Q9Y6B2 187 aa23.39■■□□□ 1.33
SMPD3-208ENST00000566723 ALKQ9UM73 1620 aa23.38■■□□□ 1.33
SMPD3-208ENST00000566723 IDI1Q13907 227 aa23.38■■□□□ 1.33
SMPD3-208ENST00000566723 TOM1O60784 492 aa23.37■■□□□ 1.33
SMPD3-208ENST00000566723 IQGAP3Q86VI3 1631 aa23.37■■□□□ 1.33
SMPD3-208ENST00000566723 E9PCH4 1651 aa23.35■■□□□ 1.33
SMPD3-208ENST00000566723 XIRP1Q702N8 1843 aaKnown RBP23.35■■□□□ 1.33
SMPD3-208ENST00000566723 SCAF1Q9H7N4 1312 aaKnown RBP23.33■■□□□ 1.33
SMPD3-208ENST00000566723 PIP4K2BP78356 416 aa23.33■■□□□ 1.33
SMPD3-208ENST00000566723 SLC52A1Q9NWF4 448 aa23.33■■□□□ 1.33
SMPD3-208ENST00000566723 TMEM131LA2VDJ0 1609 aa23.3■■□□□ 1.32
SMPD3-208ENST00000566723 PPARGC1BQ86YN6 1023 aaKnown RBP23.29■■□□□ 1.32
SMPD3-208ENST00000566723 HSPA1LP34931 641 aa23.27■■□□□ 1.32
SMPD3-208ENST00000566723 ITGAEP38570 1179 aa23.26■■□□□ 1.31
SMPD3-208ENST00000566723 ZFYVE9O95405 1425 aa23.25■■□□□ 1.31
SMPD3-208ENST00000566723 NWD1Q149M9 1564 aa23.25■■□□□ 1.31
SMPD3-208ENST00000566723 ILDR2Q71H61 639 aa23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms