RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 ATP7AQ04656 1500 aa18.49■□□□□ 0.55
VPS4A-204ENST00000566354 RAPGEF3O95398 923 aa18.49■□□□□ 0.55
VPS4A-204ENST00000566354 NEFLP07196 543 aa18.49■□□□□ 0.55
VPS4A-204ENST00000566354 MYT1LQ9UL68 1186 aa18.48■□□□□ 0.55
VPS4A-204ENST00000566354 DENND4BO75064 1496 aaPredicted RBP18.46■□□□□ 0.55
VPS4A-204ENST00000566354 KDM5CP41229 1560 aa18.46■□□□□ 0.55
VPS4A-204ENST00000566354 BCANQ96GW7 911 aa18.46■□□□□ 0.55
VPS4A-204ENST00000566354 KIDINS220Q9ULH0 1771 aa18.45■□□□□ 0.54
VPS4A-204ENST00000566354 DUOX2Q9NRD8 1548 aa18.45■□□□□ 0.54
VPS4A-204ENST00000566354 PLPPR3Q6T4P5 718 aa18.45■□□□□ 0.54
VPS4A-204ENST00000566354 TEX14Q8IWB6 1497 aa18.44■□□□□ 0.54
VPS4A-204ENST00000566354 MPHOSPH9Q99550 1183 aa18.44■□□□□ 0.54
VPS4A-204ENST00000566354 RICTORQ6R327 1708 aa18.43■□□□□ 0.54
VPS4A-204ENST00000566354 PZPP20742 1482 aa18.42■□□□□ 0.54
VPS4A-204ENST00000566354 HECW2Q9P2P5 1572 aa18.41■□□□□ 0.54
VPS4A-204ENST00000566354 MLH3Q9UHC1 1453 aa18.41■□□□□ 0.54
VPS4A-204ENST00000566354 ERBINQ96RT1 1412 aa18.4■□□□□ 0.54
VPS4A-204ENST00000566354 FOXD1Q16676 465 aa18.4■□□□□ 0.54
VPS4A-204ENST00000566354 SLC4A1APQ9BWU0 796 aaKnown RBP18.4■□□□□ 0.54
VPS4A-204ENST00000566354 FRMPD1Q5SYB0 1578 aa18.4■□□□□ 0.54
VPS4A-204ENST00000566354 NUP155O75694 1391 aa18.4■□□□□ 0.54
VPS4A-204ENST00000566354 PHF23Q9BUL5 403 aaPredicted RBP18.38■□□□□ 0.53
VPS4A-204ENST00000566354 TRHP20396 242 aaPredicted RBP18.38■□□□□ 0.53
VPS4A-204ENST00000566354 ANP32EQ9BTT0 268 aa18.37■□□□□ 0.53
VPS4A-204ENST00000566354 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.37■□□□□ 0.53
VPS4A-204ENST00000566354 ABCA6Q8N139 1617 aa18.36■□□□□ 0.53
VPS4A-204ENST00000566354 COL17A1Q9UMD9 1497 aaPredicted RBP18.36■□□□□ 0.53
VPS4A-204ENST00000566354 UNC13BO14795 1591 aa18.36■□□□□ 0.53
VPS4A-204ENST00000566354 KDM5DQ9BY66 1539 aa18.35■□□□□ 0.53
VPS4A-204ENST00000566354 DHX29Q7Z478 1369 aaKnown RBP18.35■□□□□ 0.53
VPS4A-204ENST00000566354 YEATS2Q9ULM3 1422 aa18.34■□□□□ 0.53
VPS4A-204ENST00000566354 A2MP01023 1474 aa18.33■□□□□ 0.52
VPS4A-204ENST00000566354 KIF3BO15066 747 aa18.32■□□□□ 0.52
VPS4A-204ENST00000566354 PKD2Q13563 968 aa18.32■□□□□ 0.52
VPS4A-204ENST00000566354 FAM135AQ9P2D6 1515 aa18.32■□□□□ 0.52
VPS4A-204ENST00000566354 DIP2CQ9Y2E4 1556 aa18.32■□□□□ 0.52
VPS4A-204ENST00000566354 ZMYM4Q5VZL5 1548 aa18.31■□□□□ 0.52
VPS4A-204ENST00000566354 MAGI2Q86UL8 1455 aa18.31■□□□□ 0.52
VPS4A-204ENST00000566354 HSPA5P11021 654 aaKnown RBP18.29■□□□□ 0.52
VPS4A-204ENST00000566354 EIF2AK4Q9P2K8 1649 aaKnown RBP18.29■□□□□ 0.52
VPS4A-204ENST00000566354 DAXXQ9UER7 740 aaPredicted RBP18.29■□□□□ 0.52
VPS4A-204ENST00000566354 IQGAP3Q86VI3 1631 aa18.29■□□□□ 0.52
VPS4A-204ENST00000566354 ANKRD30BQ9BXX2 1392 aa18.29■□□□□ 0.52
VPS4A-204ENST00000566354 WASHC2AQ641Q2 1341 aa18.28■□□□□ 0.52
VPS4A-204ENST00000566354 DEPDC5O75140 1603 aa18.28■□□□□ 0.52
VPS4A-204ENST00000566354 EIF4G2P78344 907 aaKnown RBP eCLIP18.28■□□□□ 0.52
VPS4A-204ENST00000566354 HNRNPUQ00839 825 aaKnown RBP eCLIP18.27■□□□□ 0.51
VPS4A-204ENST00000566354 RBM19Q9Y4C8 960 aaKnown RBP18.27■□□□□ 0.51
VPS4A-204ENST00000566354 MROH1Q8NDA8 1641 aa18.26■□□□□ 0.51
VPS4A-204ENST00000566354 PRDM15P57071 1507 aaPredicted RBP18.23■□□□□ 0.51
VPS4A-204ENST00000566354 GGT6Q6P531 493 aa18.22■□□□□ 0.51
VPS4A-204ENST00000566354 RNF17Q9BXT8 1623 aaKnown RBP18.21■□□□□ 0.51
VPS4A-204ENST00000566354 CNTLNQ9NXG0 1405 aa18.21■□□□□ 0.51
VPS4A-204ENST00000566354 VWDEQ8N2E2 1590 aa18.21■□□□□ 0.51
VPS4A-204ENST00000566354 BCORL1Q5H9F3 1711 aa18.2■□□□□ 0.5
VPS4A-204ENST00000566354 ATP10AO60312 1499 aa18.2■□□□□ 0.5
VPS4A-204ENST00000566354 L3MBTL2Q969R5 705 aa18.2■□□□□ 0.5
VPS4A-204ENST00000566354 KANK1Q14678 1352 aa18.2■□□□□ 0.5
VPS4A-204ENST00000566354 ERICH6BQ5W0A0 696 aa18.18■□□□□ 0.5
VPS4A-204ENST00000566354 RPRD2Q5VT52 1461 aaKnown RBP18.18■□□□□ 0.5
VPS4A-204ENST00000566354 E9PCH4 1651 aa18.17■□□□□ 0.5
VPS4A-204ENST00000566354 ARHGEF40Q8TER5 1519 aa18.17■□□□□ 0.5
VPS4A-204ENST00000566354 SIGLEC1Q9BZZ2 1709 aa18.17■□□□□ 0.5
VPS4A-204ENST00000566354 CEP152O94986 1710 aa18.16■□□□□ 0.5
VPS4A-204ENST00000566354 TET3O43151 1660 aa18.16■□□□□ 0.5
VPS4A-204ENST00000566354 PLA2R1Q13018 1463 aa18.16■□□□□ 0.5
VPS4A-204ENST00000566354 CCDC7Q96M83 1385 aa18.15■□□□□ 0.5
VPS4A-204ENST00000566354 REREQ9P2R6 1566 aa18.14■□□□□ 0.49
VPS4A-204ENST00000566354 PRKRIP1Q9H875 184 aaPredicted RBP18.14■□□□□ 0.49
VPS4A-204ENST00000566354 WASHC2CQ9Y4E1 1318 aa18.12■□□□□ 0.49
VPS4A-204ENST00000566354 LMTK2Q8IWU2 1503 aa18.11■□□□□ 0.49
VPS4A-204ENST00000566354 C11orf95C9JLR9 678 aaPredicted RBP18.11■□□□□ 0.49
VPS4A-204ENST00000566354 EFCAB6Q5THR3 1501 aa18.11■□□□□ 0.49
VPS4A-204ENST00000566354 ABCC3O15438 1527 aa18.11■□□□□ 0.49
VPS4A-204ENST00000566354 AGLP35573 1532 aa18.1■□□□□ 0.49
VPS4A-204ENST00000566354 RTN4Q9NQC3 1192 aaKnown RBP18.1■□□□□ 0.49
VPS4A-204ENST00000566354 CCDC144AA2RUR9 1427 aa18.09■□□□□ 0.49
VPS4A-204ENST00000566354 NBPF8Q3BBV2 869 aa18.09■□□□□ 0.49
VPS4A-204ENST00000566354 CCDC184Q52MB2 194 aa18.09■□□□□ 0.49
VPS4A-204ENST00000566354 CFAP65Q6ZU64 1925 aaKnown RBP18.08■□□□□ 0.49
VPS4A-204ENST00000566354 SPHKAPQ2M3C7 1700 aa18.08■□□□□ 0.48
VPS4A-204ENST00000566354 SPATA31E1Q6ZUB1 1445 aa18.08■□□□□ 0.48
VPS4A-204ENST00000566354 MLECQ14165 292 aa18.07■□□□□ 0.48
VPS4A-204ENST00000566354 IRX6P78412 446 aaPredicted RBP18.07■□□□□ 0.48
VPS4A-204ENST00000566354 MRS2Q9HD23 443 aa18.06■□□□□ 0.48
VPS4A-204ENST00000566354 PPP4R2Q9NY27 417 aa18.06■□□□□ 0.48
VPS4A-204ENST00000566354 PTPRTO14522 1441 aa18.06■□□□□ 0.48
VPS4A-204ENST00000566354 NPATQ14207 1427 aa18.06■□□□□ 0.48
VPS4A-204ENST00000566354 CAMSAP1Q5T5Y3 1602 aa18.06■□□□□ 0.48
VPS4A-204ENST00000566354 ZBED9Q6R2W3 1325 aa18.06■□□□□ 0.48
VPS4A-204ENST00000566354 POLR1AO95602 1720 aaPredicted RBP18.06■□□□□ 0.48
VPS4A-204ENST00000566354 FANCIQ9NVI1 1328 aa18.05■□□□□ 0.48
VPS4A-204ENST00000566354 TRPM2O94759 1503 aa18.05■□□□□ 0.48
VPS4A-204ENST00000566354 ZC3H13Q5T200 1668 aaKnown RBP18.04■□□□□ 0.48
VPS4A-204ENST00000566354 KIF7Q2M1P5 1343 aa18.04■□□□□ 0.48
VPS4A-204ENST00000566354 FAM9BQ8IZU0 186 aa18.04■□□□□ 0.48
VPS4A-204ENST00000566354 ARID4BQ4LE39 1312 aaPredicted RBP18.03■□□□□ 0.48
VPS4A-204ENST00000566354 CLTCL1P53675 1640 aa18.02■□□□□ 0.47
VPS4A-204ENST00000566354 UGGT1Q9NYU2 1555 aa18.01■□□□□ 0.47
VPS4A-204ENST00000566354 RGL3Q3MIN7 710 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 117.2 ms