RNA–Protein interactions for RNA: ENST00000566292.5

USB1-213, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 575 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-213ENST00000566292 KDM5DQ9BY66 1539 aa28.86■■■□□ 2.21
USB1-213ENST00000566292 FAM135AQ9P2D6 1515 aa28.86■■■□□ 2.21
USB1-213ENST00000566292 CEP170BQ9Y4F5 1589 aaPredicted RBP28.86■■■□□ 2.21
USB1-213ENST00000566292 RNF17Q9BXT8 1623 aaKnown RBP28.81■■■□□ 2.2
USB1-213ENST00000566292 APLP2Q06481 763 aa28.81■■■□□ 2.2
USB1-213ENST00000566292 PTPN23Q9H3S7 1636 aa28.8■■■□□ 2.2
USB1-213ENST00000566292 PZPP20742 1482 aa28.78■■■□□ 2.2
USB1-213ENST00000566292 CROCC2H7BZ55 1655 aa28.78■■■□□ 2.2
USB1-213ENST00000566292 EIF2AK4Q9P2K8 1649 aaKnown RBP28.78■■■□□ 2.2
USB1-213ENST00000566292 WASHC2CQ9Y4E1 1318 aa28.77■■■□□ 2.2
USB1-213ENST00000566292 PLA2R1Q13018 1463 aa28.77■■■□□ 2.2
USB1-213ENST00000566292 FBXO31Q5XUX0 539 aaPredicted RBP28.76■■■□□ 2.19
USB1-213ENST00000566292 DNMT1P26358 1616 aaKnown RBP28.76■■■□□ 2.19
USB1-213ENST00000566292 A2ML1A8K2U0 1454 aa28.75■■■□□ 2.19
USB1-213ENST00000566292 NCKAP5LQ9HCH0 1330 aa28.74■■■□□ 2.19
USB1-213ENST00000566292 TCOF1Q13428 1488 aaKnown RBP28.73■■■□□ 2.19
USB1-213ENST00000566292 LTBP4Q8N2S1 1624 aa28.73■■■□□ 2.19
USB1-213ENST00000566292 MROH1Q8NDA8 1641 aa28.72■■■□□ 2.19
USB1-213ENST00000566292 ABCC5O15440 1437 aa28.72■■■□□ 2.19
USB1-213ENST00000566292 ZC3H13Q5T200 1668 aaKnown RBP28.72■■■□□ 2.19
USB1-213ENST00000566292 TNRQ92752 1358 aa28.72■■■□□ 2.19
USB1-213ENST00000566292 SHANK2Q9UPX8 1470 aa28.71■■■□□ 2.19
USB1-213ENST00000566292 FGD6Q6ZV73 1430 aa28.7■■■□□ 2.19
USB1-213ENST00000566292 ABCC3O15438 1527 aa28.7■■■□□ 2.19
USB1-213ENST00000566292 DUOX2Q9NRD8 1548 aa28.7■■■□□ 2.19
USB1-213ENST00000566292 PKD2Q13563 968 aa28.68■■■□□ 2.18
USB1-213ENST00000566292 CEP152O94986 1710 aa28.68■■■□□ 2.18
USB1-213ENST00000566292 DAPK1P53355 1430 aa28.66■■■□□ 2.18
USB1-213ENST00000566292 KIF15Q9NS87 1388 aa28.64■■■□□ 2.18
USB1-213ENST00000566292 POLR1AO95602 1720 aaPredicted RBP28.64■■■□□ 2.18
USB1-213ENST00000566292 SPATA31D1Q6ZQQ2 1576 aa28.61■■■□□ 2.17
USB1-213ENST00000566292 CFAP65Q6ZU64 1925 aaKnown RBP28.61■■■□□ 2.17
USB1-213ENST00000566292 NLRP1Q9C000 1473 aa28.6■■■□□ 2.17
USB1-213ENST00000566292 ERBINQ96RT1 1412 aa28.6■■■□□ 2.17
USB1-213ENST00000566292 RRP7BPQ9NSQ0 103 aa28.59■■■□□ 2.17
USB1-213ENST00000566292 PRDM15P57071 1507 aaPredicted RBP28.59■■■□□ 2.17
USB1-213ENST00000566292 NEURL4Q96JN8 1562 aa28.58■■■□□ 2.17
USB1-213ENST00000566292 ZNF335Q9H4Z2 1342 aaPredicted RBP28.58■■■□□ 2.17
USB1-213ENST00000566292 ERVK-7P63135 1459 aa28.57■■■□□ 2.16
USB1-213ENST00000566292 IQSEC2Q5JU85 1478 aa28.57■■■□□ 2.16
USB1-213ENST00000566292 UGGT1Q9NYU2 1555 aa28.57■■■□□ 2.16
USB1-213ENST00000566292 DEPDC5O75140 1603 aa28.56■■■□□ 2.16
USB1-213ENST00000566292 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.53■■■□□ 2.16
USB1-213ENST00000566292 CHIC2Q9UKJ5 165 aa28.52■■■□□ 2.16
USB1-213ENST00000566292 ANKRD30AQ9BXX3 1397 aa28.5■■■□□ 2.15
USB1-213ENST00000566292 THEMISQ8N1K5 641 aaPredicted RBP28.5■■■□□ 2.15
USB1-213ENST00000566292 ADGRL2O95490 1459 aa28.46■■■□□ 2.15
USB1-213ENST00000566292 ARHGAP31Q2M1Z3 1444 aa28.46■■■□□ 2.15
USB1-213ENST00000566292 ANKLE2Q86XL3 938 aa28.46■■■□□ 2.15
USB1-213ENST00000566292 UBR1Q8IWV7 1749 aa28.46■■■□□ 2.15
USB1-213ENST00000566292 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.45■■■□□ 2.14
USB1-213ENST00000566292 VWDEQ8N2E2 1590 aa28.44■■■□□ 2.14
USB1-213ENST00000566292 MED14O60244 1454 aa28.43■■■□□ 2.14
USB1-213ENST00000566292 FAM50AQ14320 339 aaKnown RBP28.43■■■□□ 2.14
USB1-213ENST00000566292 IQGAP1P46940 1657 aa28.41■■■□□ 2.14
USB1-213ENST00000566292 KANK1Q14678 1352 aa28.4■■■□□ 2.14
USB1-213ENST00000566292 NPHP4O75161 1426 aaPredicted RBP28.4■■■□□ 2.14
USB1-213ENST00000566292 LMTK2Q8IWU2 1503 aa28.39■■■□□ 2.14
USB1-213ENST00000566292 CPS1P31327 1500 aa28.35■■■□□ 2.13
USB1-213ENST00000566292 PIK3C2BO00750 1634 aa28.35■■■□□ 2.13
USB1-213ENST00000566292 EFCAB6Q5THR3 1501 aa28.32■■■□□ 2.12
USB1-213ENST00000566292 UBAP1LF5GYI3 381 aa28.31■■■□□ 2.12
USB1-213ENST00000566292 ANKRD50Q9ULJ7 1429 aa28.31■■■□□ 2.12
USB1-213ENST00000566292 ARHGAP23Q9P227 1491 aa28.31■■■□□ 2.12
USB1-213ENST00000566292 SLIT1O75093 1534 aa28.31■■■□□ 2.12
USB1-213ENST00000566292 STRCP1A6NGW2 1772 aa28.3■■■□□ 2.12
USB1-213ENST00000566292 SYNMO15061 1565 aa28.3■■■□□ 2.12
USB1-213ENST00000566292 SCAF11Q99590 1463 aaKnown RBP28.28■■■□□ 2.12
USB1-213ENST00000566292 KDM5AP29375 1690 aaKnown RBP28.27■■■□□ 2.12
USB1-213ENST00000566292 LTKP29376 864 aa28.25■■■□□ 2.11
USB1-213ENST00000566292 NOS1P29475 1434 aa28.25■■■□□ 2.11
USB1-213ENST00000566292 UNC13BO14795 1591 aa28.23■■■□□ 2.11
USB1-213ENST00000566292 TET3O43151 1660 aa28.23■■■□□ 2.11
USB1-213ENST00000566292 IDI1Q13907 227 aa28.22■■■□□ 2.11
USB1-213ENST00000566292 PPARGC1BQ86YN6 1023 aaKnown RBP28.22■■■□□ 2.11
USB1-213ENST00000566292 TXNDC2Q86VQ3 553 aa28.21■■■□□ 2.11
USB1-213ENST00000566292 TMEM2Q9UHN6 1383 aa28.2■■■□□ 2.1
USB1-213ENST00000566292 GCC2Q8IWJ2 1684 aa28.19■■■□□ 2.1
USB1-213ENST00000566292 ROCK1Q13464 1354 aa28.19■■■□□ 2.1
USB1-213ENST00000566292 RPRD2Q5VT52 1461 aaKnown RBP28.18■■■□□ 2.1
USB1-213ENST00000566292 STAG3Q9UJ98 1225 aa28.17■■■□□ 2.1
USB1-213ENST00000566292 ADGRB3O60242 1522 aa28.17■■■□□ 2.1
USB1-213ENST00000566292 LRRC7Q96NW7 1537 aa28.16■■■□□ 2.1
USB1-213ENST00000566292 ALKQ9UM73 1620 aa28.15■■■□□ 2.1
USB1-213ENST00000566292 EID1Q9Y6B2 187 aa28.15■■■□□ 2.1
USB1-213ENST00000566292 MYO5BQ9ULV0 1848 aa28.14■■■□□ 2.1
USB1-213ENST00000566292 DISP3Q9P2K9 1392 aa28.12■■■□□ 2.09
USB1-213ENST00000566292 TOM1O60784 492 aa28.12■■■□□ 2.09
USB1-213ENST00000566292 E9PCH4 1651 aa28.12■■■□□ 2.09
USB1-213ENST00000566292 IQGAP3Q86VI3 1631 aa28.11■■■□□ 2.09
USB1-213ENST00000566292 ITGAEP38570 1179 aa28.1■■■□□ 2.09
USB1-213ENST00000566292 PIP4K2BP78356 416 aa28.1■■■□□ 2.09
USB1-213ENST00000566292 SLC52A1Q9NWF4 448 aa28.1■■■□□ 2.09
USB1-213ENST00000566292 XIRP1Q702N8 1843 aaKnown RBP28.09■■■□□ 2.09
USB1-213ENST00000566292 SCAF1Q9H7N4 1312 aaKnown RBP28.08■■■□□ 2.09
USB1-213ENST00000566292 TMEM131LA2VDJ0 1609 aa28.05■■■□□ 2.08
USB1-213ENST00000566292 HSPA1LP34931 641 aa28.02■■■□□ 2.08
USB1-213ENST00000566292 ZFYVE9O95405 1425 aa28.01■■■□□ 2.07
USB1-213ENST00000566292 RRBP1Q9P2E9 1410 aaKnown RBP28■■■□□ 2.07
USB1-213ENST00000566292 NUP155O75694 1391 aa27.99■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms