RNA–Protein interactions for RNA: ENST00000565803.1

CHD9-216, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 5

Gene CHD9, Length 3,625 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-216ENST00000565803 NEUROD2Q15784 382 aa4.6□□□□□ -1.67
CHD9-216ENST00000565803 NCOA1Q15788 1441 aa4.6□□□□□ -1.67
CHD9-216ENST00000565803 BBXQ8WY36 941 aaPredicted RBP4.6□□□□□ -1.67
CHD9-216ENST00000565803 FANCAO15360 1455 aa4.6□□□□□ -1.67
CHD9-216ENST00000565803 AGLP35573 1532 aa4.6□□□□□ -1.67
CHD9-216ENST00000565803 ZBTB47Q9UFB7 747 aaPredicted RBP4.59□□□□□ -1.67
CHD9-216ENST00000565803 PDE4CQ08493 712 aa4.59□□□□□ -1.67
CHD9-216ENST00000565803 RNF17Q9BXT8 1623 aaKnown RBP4.59□□□□□ -1.68
CHD9-216ENST00000565803 RAD21O60216 631 aa4.59□□□□□ -1.68
CHD9-216ENST00000565803 USP35Q9P2H5 1018 aa4.59□□□□□ -1.68
CHD9-216ENST00000565803 IGSF3O75054 1194 aa4.58□□□□□ -1.68
CHD9-216ENST00000565803 BCL11AQ9H165 835 aa4.58□□□□□ -1.68
CHD9-216ENST00000565803 UACAQ9BZF9 1416 aa4.58□□□□□ -1.68
CHD9-216ENST00000565803 KIAA0556O60303 1618 aa4.58□□□□□ -1.68
CHD9-216ENST00000565803 TNIKQ9UKE5 1360 aa4.58□□□□□ -1.68
CHD9-216ENST00000565803 C3P01024 1663 aa4.58□□□□□ -1.68
CHD9-216ENST00000565803 POLR1AO95602 1720 aaPredicted RBP4.58□□□□□ -1.68
CHD9-216ENST00000565803 BRD2P25440 801 aaKnown RBP4.58□□□□□ -1.68
CHD9-216ENST00000565803 TCOF1Q13428 1488 aaKnown RBP4.58□□□□□ -1.68
CHD9-216ENST00000565803 FAM135AQ9P2D6 1515 aa4.58□□□□□ -1.68
CHD9-216ENST00000565803 NEFLP07196 543 aa4.57□□□□□ -1.68
CHD9-216ENST00000565803 RBM25P49756 843 aaKnown RBP4.57□□□□□ -1.68
CHD9-216ENST00000565803 RNF25Q96BH1 459 aaPredicted RBP4.57□□□□□ -1.68
CHD9-216ENST00000565803 DEPDC5O75140 1603 aa4.57□□□□□ -1.68
CHD9-216ENST00000565803 ARID3CA6NKF2 412 aa4.57□□□□□ -1.68
CHD9-216ENST00000565803 AEBP1Q8IUX7 1158 aa4.57□□□□□ -1.68
CHD9-216ENST00000565803 DISP1Q96F81 1524 aa4.56□□□□□ -1.68
CHD9-216ENST00000565803 NPATQ14207 1427 aa4.56□□□□□ -1.68
CHD9-216ENST00000565803 PIP4P2Q8N4L2 257 aa4.56□□□□□ -1.68
CHD9-216ENST00000565803 KCTD17Q8N5Z5 321 aa4.56□□□□□ -1.68
CHD9-216ENST00000565803 NHSL1Q5SYE7 1610 aa4.56□□□□□ -1.68
CHD9-216ENST00000565803 KDM5CP41229 1560 aa4.56□□□□□ -1.68
CHD9-216ENST00000565803 ECM2O94769 699 aaPredicted RBP4.56□□□□□ -1.68
CHD9-216ENST00000565803 UBE2Q2Q8WVN8 375 aa4.56□□□□□ -1.68
CHD9-216ENST00000565803 POGZQ7Z3K3 1410 aa4.55□□□□□ -1.68
CHD9-216ENST00000565803 IQGAP2Q13576 1575 aa4.55□□□□□ -1.68
CHD9-216ENST00000565803 CHGAP10645 457 aaKnown RBP4.55□□□□□ -1.68
CHD9-216ENST00000565803 RSPH6AQ9H0K4 717 aa4.55□□□□□ -1.68
CHD9-216ENST00000565803 CCDC61Q9Y6R9 512 aa4.55□□□□□ -1.68
CHD9-216ENST00000565803 C19orf67A6NJJ6 358 aa4.54□□□□□ -1.68
CHD9-216ENST00000565803 NPM1P06748 294 aaKnown RBP eCLIP4.54□□□□□ -1.68
CHD9-216ENST00000565803 KIF14Q15058 1648 aa4.54□□□□□ -1.68
CHD9-216ENST00000565803 GSE1Q14687 1217 aa4.54□□□□□ -1.68
CHD9-216ENST00000565803 RASEFQ8IZ41 740 aa4.54□□□□□ -1.68
CHD9-216ENST00000565803 ZFYVE16Q7Z3T8 1539 aa4.53□□□□□ -1.68
CHD9-216ENST00000565803 SETD1AO15047 1707 aaKnown RBP4.53□□□□□ -1.68
CHD9-216ENST00000565803 HS6ST3Q8IZP7 471 aa4.53□□□□□ -1.68
CHD9-216ENST00000565803 ARID4BQ4LE39 1312 aaPredicted RBP4.53□□□□□ -1.68
CHD9-216ENST00000565803 JPH4Q96JJ6 628 aa4.53□□□□□ -1.68
CHD9-216ENST00000565803 VWDEQ8N2E2 1590 aa4.53□□□□□ -1.68
CHD9-216ENST00000565803 RAPGEF2Q9Y4G8 1499 aa4.53□□□□□ -1.68
CHD9-216ENST00000565803 A0A0U1RQG5 324 aaPredicted RBP4.53□□□□□ -1.68
CHD9-216ENST00000565803 APBB1O00213 710 aa4.53□□□□□ -1.68
CHD9-216ENST00000565803 FARP1Q9Y4F1 1045 aaPredicted RBP4.53□□□□□ -1.68
CHD9-216ENST00000565803 WRNQ14191 1432 aaPredicted RBP eCLIP4.52□□□□□ -1.69
CHD9-216ENST00000565803 MYO3AQ8NEV4 1616 aa4.52□□□□□ -1.69
CHD9-216ENST00000565803 PRR29P0C7W0 189 aa4.52□□□□□ -1.69
CHD9-216ENST00000565803 CD109Q6YHK3 1445 aa4.52□□□□□ -1.69
CHD9-216ENST00000565803 PPM1GO15355 546 aaPredicted RBP4.51□□□□□ -1.69
CHD9-216ENST00000565803 CHRDL2Q6WN34 429 aa4.51□□□□□ -1.69
CHD9-216ENST00000565803 NEURL4Q96JN8 1562 aa4.51□□□□□ -1.69
CHD9-216ENST00000565803 PTPRGP23470 1445 aa4.51□□□□□ -1.69
CHD9-216ENST00000565803 CARMIL2Q6F5E8 1435 aa4.51□□□□□ -1.69
CHD9-216ENST00000565803 RGL2O15211 777 aa4.51□□□□□ -1.69
CHD9-216ENST00000565803 TAF7LQ5H9L4 462 aa4.51□□□□□ -1.69
CHD9-216ENST00000565803 AKNAQ7Z591 1439 aa4.5□□□□□ -1.69
CHD9-216ENST00000565803 ZNF526Q8TF50 670 aaPredicted RBP4.5□□□□□ -1.69
CHD9-216ENST00000565803 ZMYND15Q9H091 742 aa4.5□□□□□ -1.69
CHD9-216ENST00000565803 PTPRKQ15262 1439 aa4.5□□□□□ -1.69
CHD9-216ENST00000565803 BRPF1P55201 1214 aaPredicted RBP4.5□□□□□ -1.69
CHD9-216ENST00000565803 FOXD4L5Q5VV16 416 aaPredicted RBP4.5□□□□□ -1.69
CHD9-216ENST00000565803 FOXD4L4Q8WXT5 416 aaPredicted RBP4.5□□□□□ -1.69
CHD9-216ENST00000565803 RAPGEF6Q8TEU7 1601 aa4.5□□□□□ -1.69
CHD9-216ENST00000565803 MED14O60244 1454 aa4.5□□□□□ -1.69
CHD9-216ENST00000565803 CDK13Q14004 1512 aaKnown RBP4.5□□□□□ -1.69
CHD9-216ENST00000565803 ZNF579Q8NAF0 562 aaKnown RBP4.5□□□□□ -1.69
CHD9-216ENST00000565803 UHRF1BP1Q6BDS2 1440 aa4.49□□□□□ -1.69
CHD9-216ENST00000565803 ZNF428Q96B54 188 aa4.49□□□□□ -1.69
CHD9-216ENST00000565803 CTTNBP2Q8WZ74 1663 aa4.49□□□□□ -1.69
CHD9-216ENST00000565803 XIRP1Q702N8 1843 aaKnown RBP4.49□□□□□ -1.69
CHD9-216ENST00000565803 SHPRHQ149N8 1683 aa4.49□□□□□ -1.69
CHD9-216ENST00000565803 CLCN6P51797 869 aa4.48□□□□□ -1.69
CHD9-216ENST00000565803 MIER1Q8N108 512 aa4.48□□□□□ -1.69
CHD9-216ENST00000565803 C9orf84Q5VXU9 1444 aa4.48□□□□□ -1.69
CHD9-216ENST00000565803 CNTLNQ9NXG0 1405 aa4.48□□□□□ -1.69
CHD9-216ENST00000565803 IFFO2Q5TF58 517 aa4.48□□□□□ -1.69
CHD9-216ENST00000565803 NECTIN2Q92692 538 aa4.48□□□□□ -1.69
CHD9-216ENST00000565803 ZC3H13Q5T200 1668 aaKnown RBP4.47□□□□□ -1.69
CHD9-216ENST00000565803 CAMSAP1Q5T5Y3 1602 aa4.47□□□□□ -1.69
CHD9-216ENST00000565803 SPHKAPQ2M3C7 1700 aa4.46□□□□□ -1.69
CHD9-216ENST00000565803 TMCO4Q5TGY1 634 aa4.46□□□□□ -1.69
CHD9-216ENST00000565803 HECW1Q76N89 1606 aa4.46□□□□□ -1.7
CHD9-216ENST00000565803 SUPT6HQ7KZ85 1726 aaKnown RBP4.46□□□□□ -1.7
CHD9-216ENST00000565803 MTMR7Q9Y216 660 aa4.46□□□□□ -1.7
CHD9-216ENST00000565803 NKX1-1Q15270 411 aaPredicted RBP4.46□□□□□ -1.7
CHD9-216ENST00000565803 KIF12Q96FN5 646 aa4.46□□□□□ -1.7
CHD9-216ENST00000565803 WDR70Q9NW82 654 aa4.46□□□□□ -1.7
CHD9-216ENST00000565803 RIOK3O14730 519 aaKnown RBP4.45□□□□□ -1.7
CHD9-216ENST00000565803 DIP2CQ9Y2E4 1556 aa4.45□□□□□ -1.7
CHD9-216ENST00000565803 CEP170BQ9Y4F5 1589 aaPredicted RBP4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms