RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 STRCQ7RTU9 1775 aa32.12■■■□□ 2.73
CLN3-219ENST00000565778 CHIC2Q9UKJ5 165 aa32.11■■■□□ 2.73
CLN3-219ENST00000565778 KDM5DQ9BY66 1539 aa32.1■■■□□ 2.73
CLN3-219ENST00000565778 FAM50AQ14320 339 aaKnown RBP32.09■■■□□ 2.73
CLN3-219ENST00000565778 TCOF1Q13428 1488 aaKnown RBP32.09■■■□□ 2.73
CLN3-219ENST00000565778 DAPK1P53355 1430 aa32.09■■■□□ 2.73
CLN3-219ENST00000565778 CERKQ8TCT0 537 aa32.08■■■□□ 2.73
CLN3-219ENST00000565778 KIF15Q9NS87 1388 aa32.07■■■□□ 2.73
CLN3-219ENST00000565778 DUOX2Q9NRD8 1548 aa32.05■■■□□ 2.72
CLN3-219ENST00000565778 FAM135AQ9P2D6 1515 aa32.05■■■□□ 2.72
CLN3-219ENST00000565778 NCKAP5LQ9HCH0 1330 aa32.05■■■□□ 2.72
CLN3-219ENST00000565778 NCOA1Q15788 1441 aa32.05■■■□□ 2.72
CLN3-219ENST00000565778 CAMSAP1Q5T5Y3 1602 aa32.04■■■□□ 2.72
CLN3-219ENST00000565778 PTPRTO14522 1441 aa32.04■■■□□ 2.72
CLN3-219ENST00000565778 TNRQ92752 1358 aa32.04■■■□□ 2.72
CLN3-219ENST00000565778 SHANK2Q9UPX8 1470 aa32.03■■■□□ 2.72
CLN3-219ENST00000565778 PZPP20742 1482 aa32.03■■■□□ 2.72
CLN3-219ENST00000565778 MYO3AQ8NEV4 1616 aa32.01■■■□□ 2.72
CLN3-219ENST00000565778 ANKRD30AQ9BXX3 1397 aa32■■■□□ 2.71
CLN3-219ENST00000565778 DNMT1P26358 1616 aaKnown RBP32■■■□□ 2.71
CLN3-219ENST00000565778 PKD2Q13563 968 aa31.99■■■□□ 2.71
CLN3-219ENST00000565778 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.99■■■□□ 2.71
CLN3-219ENST00000565778 CEP170BQ9Y4F5 1589 aaPredicted RBP31.98■■■□□ 2.71
CLN3-219ENST00000565778 RNF17Q9BXT8 1623 aaKnown RBP31.98■■■□□ 2.71
CLN3-219ENST00000565778 EIF2AK4Q9P2K8 1649 aaKnown RBP31.98■■■□□ 2.71
CLN3-219ENST00000565778 PPARGC1BQ86YN6 1023 aaKnown RBP31.97■■■□□ 2.71
CLN3-219ENST00000565778 A2ML1A8K2U0 1454 aa31.97■■■□□ 2.71
CLN3-219ENST00000565778 CROCC2H7BZ55 1655 aa31.96■■■□□ 2.71
CLN3-219ENST00000565778 ERBINQ96RT1 1412 aa31.94■■■□□ 2.7
CLN3-219ENST00000565778 ABCC3O15438 1527 aa31.94■■■□□ 2.7
CLN3-219ENST00000565778 ZNF142P52746 1687 aaPredicted RBP31.93■■■□□ 2.7
CLN3-219ENST00000565778 PLA2R1Q13018 1463 aa31.91■■■□□ 2.7
CLN3-219ENST00000565778 THEMISQ8N1K5 641 aaPredicted RBP31.91■■■□□ 2.7
CLN3-219ENST00000565778 MROH1Q8NDA8 1641 aa31.88■■■□□ 2.69
CLN3-219ENST00000565778 KANK1Q14678 1352 aa31.87■■■□□ 2.69
CLN3-219ENST00000565778 ZC3H13Q5T200 1668 aaKnown RBP31.86■■■□□ 2.69
CLN3-219ENST00000565778 NLRP1Q9C000 1473 aa31.85■■■□□ 2.69
CLN3-219ENST00000565778 ANKLE2Q86XL3 938 aa31.83■■■□□ 2.69
CLN3-219ENST00000565778 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.82■■■□□ 2.69
CLN3-219ENST00000565778 CEP152O94986 1710 aa31.8■■■□□ 2.68
CLN3-219ENST00000565778 ADGRL2O95490 1459 aa31.8■■■□□ 2.68
CLN3-219ENST00000565778 ERVK-7P63135 1459 aa31.8■■■□□ 2.68
CLN3-219ENST00000565778 PRDM15P57071 1507 aaPredicted RBP31.79■■■□□ 2.68
CLN3-219ENST00000565778 UGGT1Q9NYU2 1555 aa31.78■■■□□ 2.68
CLN3-219ENST00000565778 ZNF335Q9H4Z2 1342 aaPredicted RBP31.77■■■□□ 2.68
CLN3-219ENST00000565778 SPATA31D1Q6ZQQ2 1576 aa31.77■■■□□ 2.68
CLN3-219ENST00000565778 ITGAEP38570 1179 aa31.77■■■□□ 2.68
CLN3-219ENST00000565778 ARHGAP31Q2M1Z3 1444 aa31.76■■■□□ 2.68
CLN3-219ENST00000565778 CFAP65Q6ZU64 1925 aaKnown RBP31.75■■■□□ 2.67
CLN3-219ENST00000565778 ANKRD50Q9ULJ7 1429 aa31.74■■■□□ 2.67
CLN3-219ENST00000565778 LTBP4Q8N2S1 1624 aa31.73■■■□□ 2.67
CLN3-219ENST00000565778 DEPDC5O75140 1603 aa31.71■■■□□ 2.67
CLN3-219ENST00000565778 STAG3Q9UJ98 1225 aa31.66■■■□□ 2.66
CLN3-219ENST00000565778 LMTK2Q8IWU2 1503 aa31.64■■■□□ 2.66
CLN3-219ENST00000565778 ROCK1Q13464 1354 aa31.63■■■□□ 2.65
CLN3-219ENST00000565778 VWDEQ8N2E2 1590 aa31.63■■■□□ 2.65
CLN3-219ENST00000565778 POLR1AO95602 1720 aaPredicted RBP31.61■■■□□ 2.65
CLN3-219ENST00000565778 NEURL4Q96JN8 1562 aa31.61■■■□□ 2.65
CLN3-219ENST00000565778 NPHP4O75161 1426 aaPredicted RBP31.61■■■□□ 2.65
CLN3-219ENST00000565778 IDI1Q13907 227 aa31.61■■■□□ 2.65
CLN3-219ENST00000565778 TXNDC2Q86VQ3 553 aa31.59■■■□□ 2.65
CLN3-219ENST00000565778 MED14O60244 1454 aa31.58■■■□□ 2.65
CLN3-219ENST00000565778 IQSEC2Q5JU85 1478 aa31.58■■■□□ 2.65
CLN3-219ENST00000565778 EID1Q9Y6B2 187 aa31.57■■■□□ 2.64
CLN3-219ENST00000565778 LTKP29376 864 aa31.55■■■□□ 2.64
CLN3-219ENST00000565778 UBR1Q8IWV7 1749 aa31.54■■■□□ 2.64
CLN3-219ENST00000565778 SLC52A1Q9NWF4 448 aa31.53■■■□□ 2.64
CLN3-219ENST00000565778 UBAP1LF5GYI3 381 aa31.52■■■□□ 2.64
CLN3-219ENST00000565778 EFCAB6Q5THR3 1501 aa31.52■■■□□ 2.64
CLN3-219ENST00000565778 NOS1P29475 1434 aa31.5■■■□□ 2.63
CLN3-219ENST00000565778 SCAF11Q99590 1463 aaKnown RBP31.48■■■□□ 2.63
CLN3-219ENST00000565778 PIK3C2BO00750 1634 aa31.48■■■□□ 2.63
CLN3-219ENST00000565778 TMEM2Q9UHN6 1383 aa31.47■■■□□ 2.63
CLN3-219ENST00000565778 ARHGAP23Q9P227 1491 aa31.46■■■□□ 2.63
CLN3-219ENST00000565778 NUP155O75694 1391 aa31.46■■■□□ 2.63
CLN3-219ENST00000565778 IQGAP1P46940 1657 aa31.46■■■□□ 2.63
CLN3-219ENST00000565778 RPRD2Q5VT52 1461 aaKnown RBP31.46■■■□□ 2.63
CLN3-219ENST00000565778 SLIT1O75093 1534 aa31.45■■■□□ 2.63
CLN3-219ENST00000565778 RRBP1Q9P2E9 1410 aaKnown RBP31.45■■■□□ 2.63
CLN3-219ENST00000565778 SYNMO15061 1565 aa31.44■■■□□ 2.62
CLN3-219ENST00000565778 CPS1P31327 1500 aa31.44■■■□□ 2.62
CLN3-219ENST00000565778 UNC13BO14795 1591 aa31.42■■■□□ 2.62
CLN3-219ENST00000565778 TET3O43151 1660 aa31.41■■■□□ 2.62
CLN3-219ENST00000565778 CHGAP10645 457 aaKnown RBP31.38■■■□□ 2.61
CLN3-219ENST00000565778 TOM1O60784 492 aa31.37■■■□□ 2.61
CLN3-219ENST00000565778 BCANQ96GW7 911 aa31.36■■■□□ 2.61
CLN3-219ENST00000565778 SCAF1Q9H7N4 1312 aaKnown RBP31.34■■■□□ 2.61
CLN3-219ENST00000565778 HDGFP51858 240 aaKnown RBP31.34■■■□□ 2.61
CLN3-219ENST00000565778 KDM5AP29375 1690 aaKnown RBP31.34■■■□□ 2.61
CLN3-219ENST00000565778 GCC2Q8IWJ2 1684 aa31.33■■■□□ 2.61
CLN3-219ENST00000565778 PIP4K2BP78356 416 aa31.32■■■□□ 2.6
CLN3-219ENST00000565778 IQGAP3Q86VI3 1631 aa31.31■■■□□ 2.6
CLN3-219ENST00000565778 ADGRB3O60242 1522 aa31.31■■■□□ 2.6
CLN3-219ENST00000565778 SLC26A8Q96RN1 970 aa31.31■■■□□ 2.6
CLN3-219ENST00000565778 SENP3Q9H4L4 574 aaPredicted RBP31.29■■■□□ 2.6
CLN3-219ENST00000565778 E9PCH4 1651 aa31.29■■■□□ 2.6
CLN3-219ENST00000565778 PPP1R15AO75807 674 aaPredicted RBP31.28■■■□□ 2.6
CLN3-219ENST00000565778 NAIPQ13075 1403 aa31.26■■■□□ 2.6
CLN3-219ENST00000565778 LRRC7Q96NW7 1537 aa31.24■■■□□ 2.59
CLN3-219ENST00000565778 TRIM52Q96A61 297 aa31.24■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms