RNA–Protein interactions for RNA: ENST00000565511.5

RAB40C-209, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 783 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-209ENST00000565511 TSPY4P0CV99 314 aa37.49■■■■□ 3.59
RAB40C-209ENST00000565511 TSPY10P0CW01 314 aa37.49■■■■□ 3.59
RAB40C-209ENST00000565511 FAM135AQ9P2D6 1515 aa37.49■■■■□ 3.59
RAB40C-209ENST00000565511 RNF17Q9BXT8 1623 aaKnown RBP37.48■■■■□ 3.59
RAB40C-209ENST00000565511 LTBP4Q8N2S1 1624 aa37.47■■■■□ 3.59
RAB40C-209ENST00000565511 PZPP20742 1482 aa37.45■■■■□ 3.59
RAB40C-209ENST00000565511 NCKAP5LQ9HCH0 1330 aa37.45■■■■□ 3.59
RAB40C-209ENST00000565511 FBXO31Q5XUX0 539 aaPredicted RBP37.45■■■■□ 3.59
RAB40C-209ENST00000565511 CROCC2H7BZ55 1655 aa37.44■■■■□ 3.58
RAB40C-209ENST00000565511 PTPN23Q9H3S7 1636 aa37.43■■■■□ 3.58
RAB40C-209ENST00000565511 PLA2R1Q13018 1463 aa37.43■■■■□ 3.58
RAB40C-209ENST00000565511 DNMT1P26358 1616 aaKnown RBP37.43■■■■□ 3.58
RAB40C-209ENST00000565511 MROH1Q8NDA8 1641 aa37.43■■■■□ 3.58
RAB40C-209ENST00000565511 A2ML1A8K2U0 1454 aa37.42■■■■□ 3.58
RAB40C-209ENST00000565511 TCOF1Q13428 1488 aaKnown RBP37.41■■■■□ 3.58
RAB40C-209ENST00000565511 EIF2AK4Q9P2K8 1649 aaKnown RBP37.41■■■■□ 3.58
RAB40C-209ENST00000565511 TNRQ92752 1358 aa37.38■■■■□ 3.57
RAB40C-209ENST00000565511 WASHC2CQ9Y4E1 1318 aa37.37■■■■□ 3.57
RAB40C-209ENST00000565511 ABCC3O15438 1527 aa37.37■■■■□ 3.57
RAB40C-209ENST00000565511 ABCC5O15440 1437 aa37.36■■■■□ 3.57
RAB40C-209ENST00000565511 ZC3H13Q5T200 1668 aaKnown RBP37.33■■■■□ 3.57
RAB40C-209ENST00000565511 CEP152O94986 1710 aa37.33■■■■□ 3.57
RAB40C-209ENST00000565511 FGD6Q6ZV73 1430 aa37.32■■■■□ 3.56
RAB40C-209ENST00000565511 SHANK2Q9UPX8 1470 aa37.32■■■■□ 3.56
RAB40C-209ENST00000565511 APLP2Q06481 763 aa37.31■■■■□ 3.56
RAB40C-209ENST00000565511 DUOX2Q9NRD8 1548 aa37.31■■■■□ 3.56
RAB40C-209ENST00000565511 DAPK1P53355 1430 aa37.27■■■■□ 3.56
RAB40C-209ENST00000565511 POLR1AO95602 1720 aaPredicted RBP37.27■■■■□ 3.56
RAB40C-209ENST00000565511 NEURL4Q96JN8 1562 aa37.26■■■■□ 3.56
RAB40C-209ENST00000565511 PKD2Q13563 968 aa37.26■■■■□ 3.56
RAB40C-209ENST00000565511 ZNF335Q9H4Z2 1342 aaPredicted RBP37.26■■■■□ 3.56
RAB40C-209ENST00000565511 KIF15Q9NS87 1388 aa37.25■■■■□ 3.55
RAB40C-209ENST00000565511 SPATA31D1Q6ZQQ2 1576 aa37.23■■■■□ 3.55
RAB40C-209ENST00000565511 PRDM15P57071 1507 aaPredicted RBP37.19■■■■□ 3.54
RAB40C-209ENST00000565511 ERVK-7P63135 1459 aa37.19■■■■□ 3.54
RAB40C-209ENST00000565511 NLRP1Q9C000 1473 aa37.19■■■■□ 3.54
RAB40C-209ENST00000565511 CFAP65Q6ZU64 1925 aaKnown RBP37.18■■■■□ 3.54
RAB40C-209ENST00000565511 RRP7BPQ9NSQ0 103 aa37.17■■■■□ 3.54
RAB40C-209ENST00000565511 IQSEC2Q5JU85 1478 aa37.16■■■■□ 3.54
RAB40C-209ENST00000565511 ERBINQ96RT1 1412 aa37.16■■■■□ 3.54
RAB40C-209ENST00000565511 UGGT1Q9NYU2 1555 aa37.16■■■■□ 3.54
RAB40C-209ENST00000565511 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP37.15■■■■□ 3.541e-6■■■□□ 17.3
RAB40C-209ENST00000565511 DEPDC5O75140 1603 aa37.14■■■■□ 3.54
RAB40C-209ENST00000565511 CHIC2Q9UKJ5 165 aa37.09■■■■□ 3.53
RAB40C-209ENST00000565511 UBR1Q8IWV7 1749 aa37.03■■■■□ 3.52
RAB40C-209ENST00000565511 THEMISQ8N1K5 641 aaPredicted RBP37.01■■■■□ 3.52
RAB40C-209ENST00000565511 ANKRD30AQ9BXX3 1397 aa37.01■■■■□ 3.51
RAB40C-209ENST00000565511 ARHGAP31Q2M1Z3 1444 aa37.01■■■■□ 3.51
RAB40C-209ENST00000565511 ADGRL2O95490 1459 aa37.01■■■■□ 3.51
RAB40C-209ENST00000565511 VWDEQ8N2E2 1590 aa37■■■■□ 3.51
RAB40C-209ENST00000565511 GRWD1Q9BQ67 446 aaKnown RBP eCLIP36.99■■■■□ 3.51
RAB40C-209ENST00000565511 MED14O60244 1454 aa36.99■■■■□ 3.51
RAB40C-209ENST00000565511 ANKLE2Q86XL3 938 aa36.98■■■■□ 3.51
RAB40C-209ENST00000565511 NPHP4O75161 1426 aaPredicted RBP36.97■■■■□ 3.51
RAB40C-209ENST00000565511 IQGAP1P46940 1657 aa36.96■■■■□ 3.51
RAB40C-209ENST00000565511 FAM50AQ14320 339 aaKnown RBP36.94■■■■□ 3.5
RAB40C-209ENST00000565511 LMTK2Q8IWU2 1503 aa36.93■■■■□ 3.5
RAB40C-209ENST00000565511 PIK3C2BO00750 1634 aa36.9■■■■□ 3.5
RAB40C-209ENST00000565511 STRCP1A6NGW2 1772 aa36.89■■■■□ 3.5
RAB40C-209ENST00000565511 CPS1P31327 1500 aa36.88■■■■□ 3.49
RAB40C-209ENST00000565511 UBAP1LF5GYI3 381 aa36.86■■■■□ 3.49
RAB40C-209ENST00000565511 KANK1Q14678 1352 aa36.86■■■■□ 3.49
RAB40C-209ENST00000565511 SYNMO15061 1565 aa36.86■■■■□ 3.49
RAB40C-209ENST00000565511 EFCAB6Q5THR3 1501 aa36.85■■■■□ 3.49
RAB40C-209ENST00000565511 ARHGAP23Q9P227 1491 aa36.85■■■■□ 3.49
RAB40C-209ENST00000565511 SLIT1O75093 1534 aa36.83■■■■□ 3.49
RAB40C-209ENST00000565511 SCAF11Q99590 1463 aaKnown RBP36.81■■■■□ 3.48
RAB40C-209ENST00000565511 ANKRD50Q9ULJ7 1429 aa36.79■■■■□ 3.48
RAB40C-209ENST00000565511 LTKP29376 864 aa36.78■■■■□ 3.48
RAB40C-209ENST00000565511 NOS1P29475 1434 aa36.76■■■■□ 3.47
RAB40C-209ENST00000565511 ALKQ9UM73 1620 aa36.74■■■■□ 3.47
RAB40C-209ENST00000565511 KDM5AP29375 1690 aaKnown RBP36.72■■■■□ 3.47
RAB40C-209ENST00000565511 PPARGC1BQ86YN6 1023 aaKnown RBP36.72■■■■□ 3.47
RAB40C-209ENST00000565511 UNC13BO14795 1591 aa36.71■■■■□ 3.47
RAB40C-209ENST00000565511 IDI1Q13907 227 aa36.69■■■■□ 3.46
RAB40C-209ENST00000565511 TET3O43151 1660 aa36.69■■■■□ 3.46
RAB40C-209ENST00000565511 LRRC7Q96NW7 1537 aa36.68■■■■□ 3.46
RAB40C-209ENST00000565511 TMEM2Q9UHN6 1383 aa36.67■■■■□ 3.46
RAB40C-209ENST00000565511 TXNDC2Q86VQ3 553 aa36.67■■■■□ 3.46
RAB40C-209ENST00000565511 DISP3Q9P2K9 1392 aa36.66■■■■□ 3.46
RAB40C-209ENST00000565511 ADGRB3O60242 1522 aa36.66■■■■□ 3.46
RAB40C-209ENST00000565511 GCC2Q8IWJ2 1684 aa36.64■■■■□ 3.46
RAB40C-209ENST00000565511 ROCK1Q13464 1354 aa36.62■■■■□ 3.45
RAB40C-209ENST00000565511 MYO5BQ9ULV0 1848 aa36.62■■■■□ 3.45
RAB40C-209ENST00000565511 RPRD2Q5VT52 1461 aaKnown RBP36.6■■■■□ 3.45
RAB40C-209ENST00000565511 PIP4K2BP78356 416 aa36.59■■■■□ 3.45
RAB40C-209ENST00000565511 XIRP1Q702N8 1843 aaKnown RBP36.59■■■■□ 3.45
RAB40C-209ENST00000565511 E9PCH4 1651 aa36.58■■■■□ 3.45
RAB40C-209ENST00000565511 STAG3Q9UJ98 1225 aa36.57■■■■□ 3.44
RAB40C-209ENST00000565511 SCAF1Q9H7N4 1312 aaKnown RBP36.57■■■■□ 3.44
RAB40C-209ENST00000565511 ILDR2Q71H61 639 aa36.56■■■■□ 3.44
RAB40C-209ENST00000565511 EID1Q9Y6B2 187 aa36.55■■■■□ 3.44
RAB40C-209ENST00000565511 IQGAP3Q86VI3 1631 aa36.55■■■■□ 3.44
RAB40C-209ENST00000565511 TOM1O60784 492 aa36.54■■■■□ 3.44
RAB40C-209ENST00000565511 ITGAEP38570 1179 aa36.53■■■■□ 3.44
RAB40C-209ENST00000565511 HSPA1LP34931 641 aa36.52■■■■□ 3.44
RAB40C-209ENST00000565511 TMEM131LA2VDJ0 1609 aa36.49■■■■□ 3.43
RAB40C-209ENST00000565511 SLC52A1Q9NWF4 448 aa36.48■■■■□ 3.43
RAB40C-209ENST00000565511 ZFYVE9O95405 1425 aa36.45■■■■□ 3.43
RAB40C-209ENST00000565511 SLC26A8Q96RN1 970 aa36.41■■■■□ 3.42
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms