RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 ITSN2Q9NZM3 1697 aa21.69■■□□□ 1.06
LINC00554-201ENST00000564841 C9orf84Q5VXU9 1444 aa21.68■■□□□ 1.06
LINC00554-201ENST00000564841 ANKRD50Q9ULJ7 1429 aa21.68■■□□□ 1.06
LINC00554-201ENST00000564841 CDC42BPAQ5VT25 1732 aa21.68■■□□□ 1.06
LINC00554-201ENST00000564841 NFKBIBQ15653 356 aa21.66■■□□□ 1.06
LINC00554-201ENST00000564841 PPM1GO15355 546 aaPredicted RBP21.66■■□□□ 1.06
LINC00554-201ENST00000564841 KDM2AQ9Y2K7 1162 aa21.65■■□□□ 1.06
LINC00554-201ENST00000564841 ARHGAP5Q13017 1502 aa21.65■■□□□ 1.06
LINC00554-201ENST00000564841 KIF15Q9NS87 1388 aa21.65■■□□□ 1.06
LINC00554-201ENST00000564841 TCERG1O14776 1098 aaKnown RBP21.63■■□□□ 1.05
LINC00554-201ENST00000564841 ANKRD30BQ9BXX2 1392 aa21.62■■□□□ 1.05
LINC00554-201ENST00000564841 ADCY10Q96PN6 1610 aa21.62■■□□□ 1.05
LINC00554-201ENST00000564841 ABCC2Q92887 1545 aa21.6■■□□□ 1.05
LINC00554-201ENST00000564841 OSCARQ8IYS5 282 aa21.6■■□□□ 1.05
LINC00554-201ENST00000564841 SHROOM2Q13796 1616 aa21.6■■□□□ 1.05
LINC00554-201ENST00000564841 RRP1P56182 461 aaKnown RBP21.59■■□□□ 1.05
LINC00554-201ENST00000564841 TTC37Q6PGP7 1564 aa21.58■■□□□ 1.05
LINC00554-201ENST00000564841 PLIN1O60240 522 aa21.58■■□□□ 1.05
LINC00554-201ENST00000564841 AFAP1Q8N556 730 aa21.58■■□□□ 1.05
LINC00554-201ENST00000564841 RGL3Q3MIN7 710 aa21.57■■□□□ 1.04
LINC00554-201ENST00000564841 DCAF11Q8TEB1 546 aa21.56■■□□□ 1.04
LINC00554-201ENST00000564841 PZPP20742 1482 aa21.56■■□□□ 1.04
LINC00554-201ENST00000564841 EFCAB2Q5VUJ9 269 aa21.56■■□□□ 1.04
LINC00554-201ENST00000564841 PNISRQ8TF01 805 aaKnown RBP21.56■■□□□ 1.04
LINC00554-201ENST00000564841 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.56■■□□□ 1.04
LINC00554-201ENST00000564841 SYCP2Q9BX26 1530 aa21.56■■□□□ 1.04
LINC00554-201ENST00000564841 TMC1Q8TDI8 760 aa21.55■■□□□ 1.04
LINC00554-201ENST00000564841 CLASP1Q7Z460 1538 aa21.55■■□□□ 1.04
LINC00554-201ENST00000564841 MBD5Q9P267 1494 aa21.54■■□□□ 1.04
LINC00554-201ENST00000564841 SAMD9LQ8IVG5 1584 aa21.53■■□□□ 1.04
LINC00554-201ENST00000564841 DHX29Q7Z478 1369 aaKnown RBP21.53■■□□□ 1.04
LINC00554-201ENST00000564841 CDC42BPBQ9Y5S2 1711 aa21.52■■□□□ 1.04
LINC00554-201ENST00000564841 FRAT2O75474 233 aaPredicted RBP21.51■■□□□ 1.03
LINC00554-201ENST00000564841 CCDC141Q6ZP82 1450 aa21.51■■□□□ 1.03
LINC00554-201ENST00000564841 NPM1P06748 294 aaKnown RBP eCLIP21.5■■□□□ 1.03
LINC00554-201ENST00000564841 RCAN3Q9UKA8 241 aa21.5■■□□□ 1.03
LINC00554-201ENST00000564841 ADGRL2O95490 1459 aa21.49■■□□□ 1.03
LINC00554-201ENST00000564841 KIAA1107Q9UPP5 1409 aa21.49■■□□□ 1.03
LINC00554-201ENST00000564841 RPRD2Q5VT52 1461 aaKnown RBP21.48■■□□□ 1.03
LINC00554-201ENST00000564841 ADGBQ8N7X0 1667 aa21.48■■□□□ 1.03
LINC00554-201ENST00000564841 ZCCHC11Q5TAX3 1644 aaKnown RBP21.48■■□□□ 1.03
LINC00554-201ENST00000564841 CDCA7LQ96GN5 454 aa21.48■■□□□ 1.03
LINC00554-201ENST00000564841 RSPH4AQ5TD94 716 aa21.46■■□□□ 1.03
LINC00554-201ENST00000564841 CROCC2H7BZ55 1655 aa21.46■■□□□ 1.03
LINC00554-201ENST00000564841 MS4A1P11836 297 aa21.45■■□□□ 1.02
LINC00554-201ENST00000564841 PREX2Q70Z35 1606 aa21.45■■□□□ 1.02
LINC00554-201ENST00000564841 SPATA31E1Q6ZUB1 1445 aa21.44■■□□□ 1.02
LINC00554-201ENST00000564841 ARHGEF12Q9NZN5 1544 aa21.44■■□□□ 1.02
LINC00554-201ENST00000564841 DAXXQ9UER7 740 aaPredicted RBP21.43■■□□□ 1.02
LINC00554-201ENST00000564841 SPAG9O60271 1321 aaKnown RBP21.43■■□□□ 1.02
LINC00554-201ENST00000564841 PKNOX2Q96KN3 472 aa21.43■■□□□ 1.02
LINC00554-201ENST00000564841 TRAPPC8Q9Y2L5 1435 aa21.43■■□□□ 1.02
LINC00554-201ENST00000564841 PLEKHH2Q8IVE3 1493 aa21.42■■□□□ 1.02
LINC00554-201ENST00000564841 DDRGK1Q96HY6 314 aa21.42■■□□□ 1.02
LINC00554-201ENST00000564841 PLCH2O75038 1416 aa21.41■■□□□ 1.02
LINC00554-201ENST00000564841 CRBNQ96SW2 442 aa21.41■■□□□ 1.02
LINC00554-201ENST00000564841 CARD11Q9BXL7 1154 aa21.4■■□□□ 1.02
LINC00554-201ENST00000564841 USP47Q96K76 1375 aa21.4■■□□□ 1.02
LINC00554-201ENST00000564841 SHANK2Q9UPX8 1470 aa21.39■■□□□ 1.02
LINC00554-201ENST00000564841 RSPH6AQ9H0K4 717 aa21.39■■□□□ 1.01
LINC00554-201ENST00000564841 CYB5RLQ6IPT4 315 aa21.39■■□□□ 1.01
LINC00554-201ENST00000564841 TEX14Q8IWB6 1497 aa21.38■■□□□ 1.01
LINC00554-201ENST00000564841 ARXQ96QS3 562 aa21.38■■□□□ 1.01
LINC00554-201ENST00000564841 MYO5CQ9NQX4 1742 aa21.38■■□□□ 1.01
LINC00554-201ENST00000564841 ST20-MTHFSA0A0A6YYL1 179 aa21.37■■□□□ 1.01
LINC00554-201ENST00000564841 C20orf194Q5TEA3 1177 aa21.37■■□□□ 1.01
LINC00554-201ENST00000564841 FAM43AQ8N2R8 423 aa21.35■■□□□ 1.01
LINC00554-201ENST00000564841 RRAGDQ9NQL2 400 aaPredicted RBP21.35■■□□□ 1.01
LINC00554-201ENST00000564841 ARHGEF5Q12774 1597 aa21.35■■□□□ 1.01
LINC00554-201ENST00000564841 ASXL2Q76L83 1435 aa21.34■■□□□ 1.01
LINC00554-201ENST00000564841 KIF3BO15066 747 aa21.34■■□□□ 1.01
LINC00554-201ENST00000564841 UHRF1BP1LA0JNW5 1464 aa21.33■■□□□ 1.01
LINC00554-201ENST00000564841 POGKQ9P215 609 aa21.33■■□□□ 1
LINC00554-201ENST00000564841 WDR7Q9Y4E6 1490 aa21.32■■□□□ 1
LINC00554-201ENST00000564841 SCAPERQ9BY12 1400 aa21.31■■□□□ 1
LINC00554-201ENST00000564841 FAM135AQ9P2D6 1515 aa21.3■■□□□ 1
LINC00554-201ENST00000564841 FANCAO15360 1455 aa21.29■■□□□ 1
LINC00554-201ENST00000564841 RGS3P49796 1198 aa21.29■■□□□ 1
LINC00554-201ENST00000564841 CCDC144AA2RUR9 1427 aa21.28■■□□□ 1
LINC00554-201ENST00000564841 VSIG10Q8N0Z9 540 aa21.28■■□□□ 1
LINC00554-201ENST00000564841 BCORL1Q5H9F3 1711 aa21.28■■□□□ 1
LINC00554-201ENST00000564841 LRPPRCP42704 1394 aaKnown RBP21.27■□□□□ 0.99
LINC00554-201ENST00000564841 NBPF1Q3BBV0 1214 aa21.26■□□□□ 0.99
LINC00554-201ENST00000564841 C8orf34Q49A92 452 aa21.26■□□□□ 0.99
LINC00554-201ENST00000564841 SENP3Q9H4L4 574 aaPredicted RBP21.24■□□□□ 0.99
LINC00554-201ENST00000564841 CC2D1BQ5T0F9 858 aaKnown RBP21.24■□□□□ 0.99
LINC00554-201ENST00000564841 ZMYND15Q9H091 742 aa21.23■□□□□ 0.99
LINC00554-201ENST00000564841 ADGRL1O94910 1474 aa21.23■□□□□ 0.99
LINC00554-201ENST00000564841 GGT6Q6P531 493 aa21.22■□□□□ 0.99
LINC00554-201ENST00000564841 RAPGEF3O95398 923 aa21.22■□□□□ 0.99
LINC00554-201ENST00000564841 ABCC1P33527 1531 aa21.21■□□□□ 0.99
LINC00554-201ENST00000564841 ROCK2O75116 1388 aaKnown RBP21.21■□□□□ 0.99
LINC00554-201ENST00000564841 MYBBP1AQ9BQG0 1328 aaKnown RBP21.2■□□□□ 0.98
LINC00554-201ENST00000564841 CHGAP10645 457 aaKnown RBP21.19■□□□□ 0.98
LINC00554-201ENST00000564841 FAM161AQ3B820 660 aa21.19■□□□□ 0.98
LINC00554-201ENST00000564841 SLKQ9H2G2 1235 aaPredicted RBP21.19■□□□□ 0.98
LINC00554-201ENST00000564841 NAP1L5Q96NT1 182 aaPredicted RBP21.17■□□□□ 0.98
LINC00554-201ENST00000564841 DUOX2Q9NRD8 1548 aa21.17■□□□□ 0.98
LINC00554-201ENST00000564841 PLA2R1Q13018 1463 aa21.17■□□□□ 0.98
LINC00554-201ENST00000564841 KDM2BQ8NHM5 1336 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms