RNA–Protein interactions for RNA: ENST00000563911.5

HERPUD1-208, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, human

TSL 3

Gene HERPUD1, Length 844 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HERPUD1-208	ENST00000563911	MAP2K5	Q13163	448 aa		11.5	□□□□□ -0.57
HERPUD1-208	ENST00000563911	PTGDR	Q13258	359 aa		11.5	□□□□□ -0.57
HERPUD1-208	ENST00000563911	ARSI	Q5FYB1	569 aa		11.5	□□□□□ -0.57
HERPUD1-208	ENST00000563911	KDM4F	A0A1W2PPD8	638 aa		11.49	□□□□□ -0.57
HERPUD1-208	ENST00000563911	HOXB3	P14651	431 aa	Predicted RBP	11.49	□□□□□ -0.57
HERPUD1-208	ENST00000563911	TYW1B	Q6NUM6	668 aa		11.49	□□□□□ -0.57
HERPUD1-208	ENST00000563911	IRF6	O14896	467 aa		11.48	□□□□□ -0.57
HERPUD1-208	ENST00000563911	NUDT7	P0C024	238 aa		11.48	□□□□□ -0.57
HERPUD1-208	ENST00000563911	FECH	P22830	423 aa		11.48	□□□□□ -0.57
HERPUD1-208	ENST00000563911	ZNF710	Q8N1W2	664 aa		11.48	□□□□□ -0.57
HERPUD1-208	ENST00000563911	KHSRP	Q92945	711 aa	Known RBP eCLIP	11.48	□□□□□ -0.57	2e-17	■□□□□ 9.7
HERPUD1-208	ENST00000563911	JPH4	Q96JJ6	628 aa		11.48	□□□□□ -0.57
HERPUD1-208	ENST00000563911	CDHR5	Q9HBB8	845 aa		11.47	□□□□□ -0.57
HERPUD1-208	ENST00000563911	PDE4D	Q08499	809 aa		11.46	□□□□□ -0.57
HERPUD1-208	ENST00000563911	FBXW7	Q969H0	707 aa		11.46	□□□□□ -0.57
HERPUD1-208	ENST00000563911	CCDC102A	Q96A19	550 aa		11.46	□□□□□ -0.57
HERPUD1-208	ENST00000563911	GPBP1L1	Q9HC44	474 aa	Predicted RBP	11.46	□□□□□ -0.57
HERPUD1-208	ENST00000563911	ZSWIM6	Q9HCJ5	1215 aa		11.46	□□□□□ -0.57
HERPUD1-208	ENST00000563911	TSR1	Q2NL82	804 aa	Known RBP	11.45	□□□□□ -0.58
HERPUD1-208	ENST00000563911	ZNF454	Q8N9F8	522 aa		11.45	□□□□□ -0.58
HERPUD1-208	ENST00000563911	GTF3C3	Q9Y5Q9	886 aa		11.45	□□□□□ -0.58
HERPUD1-208	ENST00000563911	ATAD2B	Q9ULI0	1458 aa		11.44	□□□□□ -0.58
HERPUD1-208	ENST00000563911	FOSB	P53539	338 aa		11.44	□□□□□ -0.58
HERPUD1-208	ENST00000563911	GPR153	Q6NV75	609 aa		11.43	□□□□□ -0.58
HERPUD1-208	ENST00000563911	NPDC1	Q9NQX5	325 aa	Predicted RBP	11.43	□□□□□ -0.58
HERPUD1-208	ENST00000563911	ZDHHC16	Q969W1	377 aa		11.42	□□□□□ -0.58
HERPUD1-208	ENST00000563911	KDM4C	Q9H3R0	1056 aa		11.42	□□□□□ -0.58
HERPUD1-208	ENST00000563911	SNPH	O15079	494 aa		11.4	□□□□□ -0.58
HERPUD1-208	ENST00000563911	C6orf132	Q5T0Z8	1188 aa		11.39	□□□□□ -0.59
HERPUD1-208	ENST00000563911	IL27	Q8NEV9	243 aa		11.37	□□□□□ -0.59
HERPUD1-208	ENST00000563911	LHX6	Q9UPM6	363 aa		11.37	□□□□□ -0.59
HERPUD1-208	ENST00000563911	AMHR2	Q16671	573 aa		11.36	□□□□□ -0.59
HERPUD1-208	ENST00000563911	CERK	Q8TCT0	537 aa		11.36	□□□□□ -0.59
HERPUD1-208	ENST00000563911	ADAM33	Q9BZ11	813 aa		11.36	□□□□□ -0.59
HERPUD1-208	ENST00000563911	DAXX	Q9UER7	740 aa	Predicted RBP	11.36	□□□□□ -0.59
HERPUD1-208	ENST00000563911	THOC2	Q8NI27	1593 aa	Known RBP	11.36	□□□□□ -0.59
HERPUD1-208	ENST00000563911	TTLL12	Q14166	644 aa	Predicted RBP	11.34	□□□□□ -0.59
HERPUD1-208	ENST00000563911	PPP4R3B	Q5MIZ7	849 aa		11.33	□□□□□ -0.6
HERPUD1-208	ENST00000563911	HMGXB3	Q12766	1538 aa		11.32	□□□□□ -0.6
HERPUD1-208	ENST00000563911	PSD	A5PKW4	1024 aa	Predicted RBP	11.32	□□□□□ -0.6
HERPUD1-208	ENST00000563911	PARP9	Q8IXQ6	854 aa		11.32	□□□□□ -0.6
HERPUD1-208	ENST00000563911	HOXB1	P14653	301 aa	Predicted RBP	11.31	□□□□□ -0.6
HERPUD1-208	ENST00000563911	PADI6	Q6TGC4	694 aa		11.31	□□□□□ -0.6
HERPUD1-208	ENST00000563911	OTUD5	Q96G74	571 aa		11.31	□□□□□ -0.6
HERPUD1-208	ENST00000563911	SMARCA4	P51532	1647 aa		11.31	□□□□□ -0.6
HERPUD1-208	ENST00000563911	FAM161A	Q3B820	660 aa		11.29	□□□□□ -0.6
HERPUD1-208	ENST00000563911	FAM117A	Q9C073	453 aa		11.29	□□□□□ -0.6
HERPUD1-208	ENST00000563911	SMARCA2	P51531	1590 aa		11.28	□□□□□ -0.6
HERPUD1-208	ENST00000563911	OAT	P04181	439 aa		11.27	□□□□□ -0.61
HERPUD1-208	ENST00000563911	PRSS12	P56730	875 aa		11.27	□□□□□ -0.61
HERPUD1-208	ENST00000563911	CDCA7L	Q96GN5	454 aa		11.26	□□□□□ -0.61
HERPUD1-208	ENST00000563911	BCL2L12	Q9HB09	334 aa		11.26	□□□□□ -0.61
HERPUD1-208	ENST00000563911	RBM27	Q9P2N5	1060 aa	Known RBP	11.26	□□□□□ -0.61
HERPUD1-208	ENST00000563911	PTPRE	P23469	700 aa		11.25	□□□□□ -0.61
HERPUD1-208	ENST00000563911	MDM2	Q00987	491 aa	Predicted RBP	11.25	□□□□□ -0.61
HERPUD1-208	ENST00000563911	LHX8	Q68G74	356 aa		11.25	□□□□□ -0.61
HERPUD1-208	ENST00000563911	GIGYF2	Q6Y7W6	1299 aa	Known RBP	11.25	□□□□□ -0.61
HERPUD1-208	ENST00000563911	DDRGK1	Q96HY6	314 aa		11.25	□□□□□ -0.61
HERPUD1-208	ENST00000563911	PHOX2B	Q99453	314 aa		11.25	□□□□□ -0.61
HERPUD1-208	ENST00000563911	BAZ1B	Q9UIG0	1483 aa	Known RBP	11.25	□□□□□ -0.61
HERPUD1-208	ENST00000563911	KIF21A	Q7Z4S6	1674 aa		11.24	□□□□□ -0.61
HERPUD1-208	ENST00000563911	COL9A1	P20849	921 aa		11.24	□□□□□ -0.61
HERPUD1-208	ENST00000563911	CLCN1	P35523	988 aa		11.24	□□□□□ -0.61
HERPUD1-208	ENST00000563911	METTL3	Q86U44	580 aa	Known RBP	11.24	□□□□□ -0.61
HERPUD1-208	ENST00000563911	ADGRG1	Q9Y653	693 aa		11.24	□□□□□ -0.61
HERPUD1-208	ENST00000563911	TTC13	Q8NBP0	860 aa		11.23	□□□□□ -0.61
HERPUD1-208	ENST00000563911	REPIN1	Q9BWE0	567 aa	Known RBP	11.23	□□□□□ -0.61
HERPUD1-208	ENST00000563911	GPCPD1	Q9NPB8	672 aa		11.22	□□□□□ -0.61
HERPUD1-208	ENST00000563911	TIMELESS	Q9UNS1	1208 aa		11.22	□□□□□ -0.61
HERPUD1-208	ENST00000563911	LAMC3	Q9Y6N6	1575 aa		11.21	□□□□□ -0.61
HERPUD1-208	ENST00000563911	PXYLP1	Q8TE99	480 aa		11.21	□□□□□ -0.61
HERPUD1-208	ENST00000563911	PLEKHG3	A1L390	1219 aa		11.2	□□□□□ -0.62
HERPUD1-208	ENST00000563911	PPP1R3G	B7ZBB8	358 aa		11.2	□□□□□ -0.62
HERPUD1-208	ENST00000563911	ERICH6	Q7L0X2	663 aa		11.2	□□□□□ -0.62
HERPUD1-208	ENST00000563911	RBM46	Q8TBY0	533 aa	Known RBP	11.2	□□□□□ -0.62
HERPUD1-208	ENST00000563911	NLRP7	Q8WX94	980 aa		11.2	□□□□□ -0.62
HERPUD1-208	ENST00000563911	PEG3	Q9GZU2	1588 aa		11.2	□□□□□ -0.62
HERPUD1-208	ENST00000563911	MS4A1	P11836	297 aa		11.19	□□□□□ -0.62
HERPUD1-208	ENST00000563911	TMUB1	Q9BVT8	246 aa		11.19	□□□□□ -0.62
HERPUD1-208	ENST00000563911	MROH2B	Q7Z745	1585 aa		11.19	□□□□□ -0.62
HERPUD1-208	ENST00000563911	KCNH8	Q96L42	1107 aa		11.18	□□□□□ -0.62
HERPUD1-208	ENST00000563911	KCNK17	Q96T54	332 aa		11.18	□□□□□ -0.62
HERPUD1-208	ENST00000563911	SSTR3	P32745	418 aa	Predicted RBP	11.17	□□□□□ -0.62
HERPUD1-208	ENST00000563911	FAM198A	Q9UFP1	575 aa		11.17	□□□□□ -0.62
HERPUD1-208	ENST00000563911	PDS5B	Q9NTI5	1447 aa		11.17	□□□□□ -0.62
HERPUD1-208	ENST00000563911	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	11.16	□□□□□ -0.62
HERPUD1-208	ENST00000563911	TSKS	Q9UJT2	592 aa		11.16	□□□□□ -0.62
HERPUD1-208	ENST00000563911	ERBB3	P21860	1342 aa		11.15	□□□□□ -0.62
HERPUD1-208	ENST00000563911	C14orf37	Q86TY3	774 aa		11.15	□□□□□ -0.62
HERPUD1-208	ENST00000563911	PACS2	Q86VP3	889 aa		11.14	□□□□□ -0.63
HERPUD1-208	ENST00000563911	CADPS	Q9ULU8	1353 aa		11.14	□□□□□ -0.63
HERPUD1-208	ENST00000563911	TRIM6-TRIM34	B2RNG4	842 aa		11.13	□□□□□ -0.63
HERPUD1-208	ENST00000563911	NUDT18	Q6ZVK8	323 aa		11.13	□□□□□ -0.63
HERPUD1-208	ENST00000563911	FAM217B	Q9NTX9	383 aa	Predicted RBP	11.13	□□□□□ -0.63
HERPUD1-208	ENST00000563911	RCCD1	A6NED2	376 aa		11.12	□□□□□ -0.63
HERPUD1-208	ENST00000563911	NBPF26	B4DH59	902 aa		11.12	□□□□□ -0.63
HERPUD1-208	ENST00000563911	VARS2	Q5ST30	1063 aa	Known RBP	11.12	□□□□□ -0.63
HERPUD1-208	ENST00000563911	EYA1	Q99502	592 aa		11.12	□□□□□ -0.63
HERPUD1-208	ENST00000563911	PNMA3	Q9UL41	463 aa		11.12	□□□□□ -0.63
HERPUD1-208	ENST00000563911	MRC2	Q9UBG0	1479 aa		11.12	□□□□□ -0.63

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