RNA–Protein interactions for RNA: ENST00000561940.1

SMG1-204, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 964 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-204ENST00000561940 MAP3K7O43318 606 aa14.51□□□□□ -0.09
SMG1-204ENST00000561940 BCL2L12Q9HB09 334 aa14.51□□□□□ -0.09
SMG1-204ENST00000561940 ARHGAP33O14559 1287 aa14.5□□□□□ -0.09
SMG1-204ENST00000561940 PTPREP23469 700 aa14.49□□□□□ -0.09
SMG1-204ENST00000561940 TSR1Q2NL82 804 aaKnown RBP14.49□□□□□ -0.09
SMG1-204ENST00000561940 EN1Q05925 392 aaPredicted RBP14.48□□□□□ -0.09
SMG1-204ENST00000561940 C6orf132Q5T0Z8 1188 aa14.48□□□□□ -0.09
SMG1-204ENST00000561940 DMRTA1Q5VZB9 504 aa14.48□□□□□ -0.09
SMG1-204ENST00000561940 ANKRD13DQ6ZTN6 518 aa14.47□□□□□ -0.09
SMG1-204ENST00000561940 PBX2P40425 430 aa14.46□□□□□ -0.09
SMG1-204ENST00000561940 KCNH8Q96L42 1107 aa14.45□□□□□ -0.1
SMG1-204ENST00000561940 COL9A1P20849 921 aa14.44□□□□□ -0.1
SMG1-204ENST00000561940 RBM26Q5T8P6 1007 aaKnown RBP14.43□□□□□ -0.1
SMG1-204ENST00000561940 SMYD5Q6GMV2 418 aa14.43□□□□□ -0.1
SMG1-204ENST00000561940 LSM11P83369 360 aaKnown RBP eCLIP14.42□□□□□ -0.1
SMG1-204ENST00000561940 CDHR5Q9HBB8 845 aa14.42□□□□□ -0.1
SMG1-204ENST00000561940 NUTM2FA1L443 756 aa14.39□□□□□ -0.11
SMG1-204ENST00000561940 PRKCSHP14314 528 aaPredicted RBP14.39□□□□□ -0.11
SMG1-204ENST00000561940 PPP1R3GB7ZBB8 358 aa14.36□□□□□ -0.11
SMG1-204ENST00000561940 PROX2Q3B8N5 592 aa14.35□□□□□ -0.11
SMG1-204ENST00000561940 ZBED2Q9BTP6 218 aa14.34□□□□□ -0.11
SMG1-204ENST00000561940 TULP1O00294 542 aaPredicted RBP14.33□□□□□ -0.12
SMG1-204ENST00000561940 ADGRD1Q6QNK2 874 aa14.33□□□□□ -0.12
SMG1-204ENST00000561940 VPS9D1Q9Y2B5 631 aa14.32□□□□□ -0.12
SMG1-204ENST00000561940 NPDC1Q9NQX5 325 aaPredicted RBP14.31□□□□□ -0.12
SMG1-204ENST00000561940 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.29□□□□□ -0.12
SMG1-204ENST00000561940 SPNS2Q8IVW8 549 aa14.27□□□□□ -0.13
SMG1-204ENST00000561940 TK2O00142 265 aa14.26□□□□□ -0.13
SMG1-204ENST00000561940 PTGDRQ13258 359 aa14.26□□□□□ -0.13
SMG1-204ENST00000561940 CDCA7LQ96GN5 454 aa14.26□□□□□ -0.13
SMG1-204ENST00000561940 PRSS12P56730 875 aa14.25□□□□□ -0.13
SMG1-204ENST00000561940 LMOD2Q6P5Q4 547 aa14.25□□□□□ -0.13
SMG1-204ENST00000561940 CERKQ8TCT0 537 aa14.25□□□□□ -0.13
SMG1-204ENST00000561940 KIAA1468Q9P260 1216 aa14.25□□□□□ -0.13
SMG1-204ENST00000561940 TPRNQ4KMQ1 711 aa14.24□□□□□ -0.13
SMG1-204ENST00000561940 GPIHBP1Q8IV16 184 aa14.24□□□□□ -0.13
SMG1-204ENST00000561940 SLC4A5Q9BY07 1137 aa14.24□□□□□ -0.13
SMG1-204ENST00000561940 TSKSQ9UJT2 592 aa14.24□□□□□ -0.13
SMG1-204ENST00000561940 TRIM6-TRIM34B2RNG4 842 aa14.23□□□□□ -0.13
SMG1-204ENST00000561940 STAC3Q96MF2 364 aa14.23□□□□□ -0.13
SMG1-204ENST00000561940 FAM198AQ9UFP1 575 aa14.23□□□□□ -0.13
SMG1-204ENST00000561940 FCHSD2O94868 740 aa14.22□□□□□ -0.13
SMG1-204ENST00000561940 PADI6Q6TGC4 694 aa14.22□□□□□ -0.13
SMG1-204ENST00000561940 HRO43593 1189 aa14.21□□□□□ -0.13
SMG1-204ENST00000561940 RABGEF1Q9UJ41 708 aa14.19□□□□□ -0.14
SMG1-204ENST00000561940 SMAPO00193 183 aa14.18□□□□□ -0.14
SMG1-204ENST00000561940 SEPT9Q9UHD8 586 aaPredicted RBP14.18□□□□□ -0.14
SMG1-204ENST00000561940 BHMG1C9JSJ3 638 aaPredicted RBP14.17□□□□□ -0.14
SMG1-204ENST00000561940 C3orf80F5H4A9 247 aa14.17□□□□□ -0.14
SMG1-204ENST00000561940 GPR37O15354 613 aa14.17□□□□□ -0.14
SMG1-204ENST00000561940 FECHP22830 423 aa14.17□□□□□ -0.14
SMG1-204ENST00000561940 PACS2Q86VP3 889 aa14.17□□□□□ -0.14
SMG1-204ENST00000561940 FAM161AQ3B820 660 aa14.16□□□□□ -0.14
SMG1-204ENST00000561940 ONECUT3O60422 494 aaPredicted RBP14.15□□□□□ -0.14
SMG1-204ENST00000561940 MRPL50Q8N5N7 158 aaKnown RBP14.15□□□□□ -0.14
SMG1-204ENST00000561940 HIC1Q14526 733 aa14.14□□□□□ -0.15
SMG1-204ENST00000561940 NBPF3Q9H094 633 aa14.14□□□□□ -0.15
SMG1-204ENST00000561940 PNMA3Q9UL41 463 aa14.14□□□□□ -0.15
SMG1-204ENST00000561940 MYT1LQ9UL68 1186 aa14.14□□□□□ -0.15
SMG1-204ENST00000561940 GNPATO15228 680 aa14.13□□□□□ -0.15
SMG1-204ENST00000561940 NUDT18Q6ZVK8 323 aa14.13□□□□□ -0.15
SMG1-204ENST00000561940 MMRN1Q13201 1228 aa14.12□□□□□ -0.15
SMG1-204ENST00000561940 TTC13Q8NBP0 860 aa14.12□□□□□ -0.15
SMG1-204ENST00000561940 TATDN2Q93075 761 aa14.12□□□□□ -0.15
SMG1-204ENST00000561940 RBM27Q9P2N5 1060 aaKnown RBP14.11□□□□□ -0.15
SMG1-204ENST00000561940 GOLGA8CPA6NN73 597 aa14.1□□□□□ -0.15
SMG1-204ENST00000561940 NBPF26B4DH59 902 aa14.08□□□□□ -0.16
SMG1-204ENST00000561940 ZC3H15Q8WU90 426 aaKnown RBP14.08□□□□□ -0.16
SMG1-204ENST00000561940 KCTD12Q96CX2 325 aaKnown RBP14.07□□□□□ -0.16
SMG1-204ENST00000561940 RNF166Q96A37 237 aaPredicted RBP14.05□□□□□ -0.16
SMG1-204ENST00000561940 ADGRG1Q9Y653 693 aa14.05□□□□□ -0.16
SMG1-204ENST00000561940 FAM98CQ17RN3 349 aaKnown RBP14.03□□□□□ -0.16
SMG1-204ENST00000561940 WNT2BQ93097 391 aa14.03□□□□□ -0.16
SMG1-204ENST00000561940 ZFRQ96KR1 1074 aaKnown RBP14.03□□□□□ -0.16
SMG1-204ENST00000561940 LAPTM4BQ86VI4 370 aa14.02□□□□□ -0.17
SMG1-204ENST00000561940 KRI1Q8N9T8 703 aaKnown RBP14.01□□□□□ -0.17
SMG1-204ENST00000561940 EYA1Q99502 592 aa14.01□□□□□ -0.17
SMG1-204ENST00000561940 RBM46Q8TBY0 533 aaKnown RBP13.99□□□□□ -0.17
SMG1-204ENST00000561940 ZMYND10O75800 440 aa13.98□□□□□ -0.17
SMG1-204ENST00000561940 ANKK1Q8NFD2 765 aa13.97□□□□□ -0.17
SMG1-204ENST00000561940 NLRP7Q8WX94 980 aa13.97□□□□□ -0.17
SMG1-204ENST00000561940 BCAMP50895 628 aa13.96□□□□□ -0.17
SMG1-204ENST00000561940 PTPN5P54829 565 aa13.96□□□□□ -0.17
SMG1-204ENST00000561940 MAP2K5Q13163 448 aa13.96□□□□□ -0.17
SMG1-204ENST00000561940 BARGINQ6ZT62 677 aa13.96□□□□□ -0.17
SMG1-204ENST00000561940 SAMD7Q7Z3H4 446 aa13.96□□□□□ -0.17
SMG1-204ENST00000561940 IRF6O14896 467 aa13.95□□□□□ -0.18
SMG1-204ENST00000561940 OATP04181 439 aa13.95□□□□□ -0.18
SMG1-204ENST00000561940 PXYLP1Q8TE99 480 aa13.95□□□□□ -0.18
SMG1-204ENST00000561940 RCCD1A6NED2 376 aa13.94□□□□□ -0.18
SMG1-204ENST00000561940 METTL3Q86U44 580 aaKnown RBP13.94□□□□□ -0.18
SMG1-204ENST00000561940 THSD4Q6ZMP0 1018 aa13.93□□□□□ -0.18
SMG1-204ENST00000561940 MINK1Q8N4C8 1332 aaPredicted RBP13.92□□□□□ -0.18
SMG1-204ENST00000561940 RNF40O75150 1001 aa13.92□□□□□ -0.18
SMG1-204ENST00000561940 HDGFP51858 240 aaKnown RBP13.92□□□□□ -0.18
SMG1-204ENST00000561940 SWT1Q5T5J6 900 aaKnown RBP13.92□□□□□ -0.18
SMG1-204ENST00000561940 CCDC102AQ96A19 550 aa13.92□□□□□ -0.18
SMG1-204ENST00000561940 LRCH3Q96II8 777 aa13.92□□□□□ -0.18
SMG1-204ENST00000561940 PHOX2BQ99453 314 aa13.92□□□□□ -0.18
SMG1-204ENST00000561940 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms