RNA–Protein interactions for RNA: ENST00000561781.1

RAB40C-206, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 2,439 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-206ENST00000561781 PRKRIP1Q9H875 184 aaPredicted RBP24.76■■□□□ 1.55
RAB40C-206ENST00000561781 FGD6Q6ZV73 1430 aa24.75■■□□□ 1.55
RAB40C-206ENST00000561781 RAPGEF3O95398 923 aa24.75■■□□□ 1.55
RAB40C-206ENST00000561781 HNRNPMP52272 730 aaKnown RBP eCLIP24.75■■□□□ 1.55
RAB40C-206ENST00000561781 HSPA5P11021 654 aaKnown RBP24.75■■□□□ 1.55
RAB40C-206ENST00000561781 ARHGEF12Q9NZN5 1544 aa24.74■■□□□ 1.55
RAB40C-206ENST00000561781 ITSN2Q9NZM3 1697 aa24.73■■□□□ 1.55
RAB40C-206ENST00000561781 TCERG1O14776 1098 aaKnown RBP24.73■■□□□ 1.55
RAB40C-206ENST00000561781 RNF123Q5XPI4 1314 aa24.73■■□□□ 1.55
RAB40C-206ENST00000561781 DDRGK1Q96HY6 314 aa24.73■■□□□ 1.55
RAB40C-206ENST00000561781 NFKBIBQ15653 356 aa24.72■■□□□ 1.55
RAB40C-206ENST00000561781 SMG6Q86US8 1419 aaKnown RBP24.72■■□□□ 1.55
RAB40C-206ENST00000561781 ADGRL1O94910 1474 aa24.72■■□□□ 1.55
RAB40C-206ENST00000561781 CAMSAP2Q08AD1 1489 aa24.72■■□□□ 1.55
RAB40C-206ENST00000561781 RRP9O43818 475 aaKnown RBP24.72■■□□□ 1.55
RAB40C-206ENST00000561781 SYCP2Q9BX26 1530 aa24.71■■□□□ 1.55
RAB40C-206ENST00000561781 TEX14Q8IWB6 1497 aa24.71■■□□□ 1.55
RAB40C-206ENST00000561781 SCAPERQ9BY12 1400 aa24.7■■□□□ 1.54
RAB40C-206ENST00000561781 AFAP1Q8N556 730 aa24.69■■□□□ 1.54
RAB40C-206ENST00000561781 HSP90AA2PQ14568 343 aaPredicted RBP24.69■■□□□ 1.54
RAB40C-206ENST00000561781 PTPN23Q9H3S7 1636 aa24.68■■□□□ 1.54
RAB40C-206ENST00000561781 ARAP3Q8WWN8 1544 aa24.67■■□□□ 1.54
RAB40C-206ENST00000561781 TRAPPC8Q9Y2L5 1435 aa24.67■■□□□ 1.54
RAB40C-206ENST00000561781 PDE4AP27815 886 aa24.66■■□□□ 1.54
RAB40C-206ENST00000561781 ABCC1P33527 1531 aa24.66■■□□□ 1.54
RAB40C-206ENST00000561781 NEO1Q92859 1461 aa24.66■■□□□ 1.54
RAB40C-206ENST00000561781 BACH2Q9BYV9 841 aa24.64■■□□□ 1.54
RAB40C-206ENST00000561781 MS4A1P11836 297 aa24.64■■□□□ 1.53
RAB40C-206ENST00000561781 NUDCQ9Y266 331 aa24.64■■□□□ 1.53
RAB40C-206ENST00000561781 MIA2Q96PC5 1412 aa24.64■■□□□ 1.53
RAB40C-206ENST00000561781 EIF4G2P78344 907 aaKnown RBP eCLIP24.61■■□□□ 1.53
RAB40C-206ENST00000561781 MBD5Q9P267 1494 aa24.61■■□□□ 1.53
RAB40C-206ENST00000561781 KDM6BO15054 1643 aa24.6■■□□□ 1.53
RAB40C-206ENST00000561781 CFAP74Q9C0B2 1584 aa24.6■■□□□ 1.53
RAB40C-206ENST00000561781 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.59■■□□□ 1.53
RAB40C-206ENST00000561781 CHIC2Q9UKJ5 165 aa24.59■■□□□ 1.53
RAB40C-206ENST00000561781 FRMPD1Q5SYB0 1578 aa24.59■■□□□ 1.53
RAB40C-206ENST00000561781 DCAF11Q8TEB1 546 aa24.59■■□□□ 1.53
RAB40C-206ENST00000561781 DENND4BO75064 1496 aaPredicted RBP24.58■■□□□ 1.53
RAB40C-206ENST00000561781 POGZQ7Z3K3 1410 aa24.58■■□□□ 1.52
RAB40C-206ENST00000561781 HSP90AA1P07900 732 aaKnown RBP24.57■■□□□ 1.52
RAB40C-206ENST00000561781 TCOF1Q13428 1488 aaKnown RBP24.56■■□□□ 1.52
RAB40C-206ENST00000561781 CCDC7Q96M83 1385 aa24.56■■□□□ 1.52
RAB40C-206ENST00000561781 PTPRKQ15262 1439 aa24.54■■□□□ 1.52
RAB40C-206ENST00000561781 NCOA1Q15788 1441 aa24.54■■□□□ 1.52
RAB40C-206ENST00000561781 RICTORQ6R327 1708 aa24.53■■□□□ 1.52
RAB40C-206ENST00000561781 KIAA1107Q9UPP5 1409 aa24.53■■□□□ 1.52
RAB40C-206ENST00000561781 HFM1A2PYH4 1435 aa24.52■■□□□ 1.52
RAB40C-206ENST00000561781 ABCC5O15440 1437 aa24.52■■□□□ 1.52
RAB40C-206ENST00000561781 RRAGDQ9NQL2 400 aaPredicted RBP24.51■■□□□ 1.51
RAB40C-206ENST00000561781 DAPK1P53355 1430 aa24.5■■□□□ 1.51
RAB40C-206ENST00000561781 YEATS2Q9ULM3 1422 aa24.5■■□□□ 1.51
RAB40C-206ENST00000561781 ZNF518AQ6AHZ1 1483 aa24.5■■□□□ 1.51
RAB40C-206ENST00000561781 CCDC141Q6ZP82 1450 aa24.5■■□□□ 1.51
RAB40C-206ENST00000561781 PLEKHH2Q8IVE3 1493 aa24.5■■□□□ 1.51
RAB40C-206ENST00000561781 NAP1L5Q96NT1 182 aaPredicted RBP24.47■■□□□ 1.51
RAB40C-206ENST00000561781 SPAG9O60271 1321 aaKnown RBP24.47■■□□□ 1.51
RAB40C-206ENST00000561781 DNMT1P26358 1616 aaKnown RBP24.46■■□□□ 1.51
RAB40C-206ENST00000561781 KDM5CP41229 1560 aa24.45■■□□□ 1.5
RAB40C-206ENST00000561781 C9orf84Q5VXU9 1444 aa24.44■■□□□ 1.5
RAB40C-206ENST00000561781 ARHGEF5Q12774 1597 aa24.44■■□□□ 1.5
RAB40C-206ENST00000561781 TSPY4P0CV99 314 aa24.43■■□□□ 1.5
RAB40C-206ENST00000561781 TSPY10P0CW01 314 aa24.43■■□□□ 1.5
RAB40C-206ENST00000561781 RRP7BPQ9NSQ0 103 aa24.43■■□□□ 1.5
RAB40C-206ENST00000561781 PNNQ9H307 717 aaKnown RBP24.42■■□□□ 1.5
RAB40C-206ENST00000561781 NAIPQ13075 1403 aa24.42■■□□□ 1.5
RAB40C-206ENST00000561781 ZFYVE16Q7Z3T8 1539 aa24.42■■□□□ 1.5
RAB40C-206ENST00000561781 SENP3-EIF4A1A0A087X0R7 540 aa24.41■■□□□ 1.5
RAB40C-206ENST00000561781 KIDINS220Q9ULH0 1771 aa24.4■■□□□ 1.5
RAB40C-206ENST00000561781 HECW2Q9P2P5 1572 aa24.4■■□□□ 1.5
RAB40C-206ENST00000561781 CROCC2H7BZ55 1655 aa24.39■■□□□ 1.5
RAB40C-206ENST00000561781 ATP7AQ04656 1500 aa24.39■■□□□ 1.5
RAB40C-206ENST00000561781 L1TD1Q5T7N2 865 aaKnown RBP24.39■■□□□ 1.5
RAB40C-206ENST00000561781 EXOC6Q8TAG9 804 aa24.39■■□□□ 1.49
RAB40C-206ENST00000561781 ABCA6Q8N139 1617 aa24.38■■□□□ 1.49
RAB40C-206ENST00000561781 KIF7Q2M1P5 1343 aa24.38■■□□□ 1.49
RAB40C-206ENST00000561781 INO80Q9ULG1 1556 aaPredicted RBP24.38■■□□□ 1.49
RAB40C-206ENST00000561781 ZMYM4Q5VZL5 1548 aa24.37■■□□□ 1.49
RAB40C-206ENST00000561781 FRAT2O75474 233 aaPredicted RBP24.36■■□□□ 1.49
RAB40C-206ENST00000561781 RBM10P98175 930 aaKnown RBP24.36■■□□□ 1.49
RAB40C-206ENST00000561781 CLCN1P35523 988 aa24.35■■□□□ 1.49
RAB40C-206ENST00000561781 MLH3Q9UHC1 1453 aa24.34■■□□□ 1.49
RAB40C-206ENST00000561781 RRP1P56182 461 aaKnown RBP24.34■■□□□ 1.49
RAB40C-206ENST00000561781 SIGLEC1Q9BZZ2 1709 aa24.34■■□□□ 1.49
RAB40C-206ENST00000561781 RSPH4AQ5TD94 716 aa24.33■■□□□ 1.49
RAB40C-206ENST00000561781 DIP2CQ9Y2E4 1556 aa24.33■■□□□ 1.49
RAB40C-206ENST00000561781 AAMPQ13685 434 aa24.33■■□□□ 1.48
RAB40C-206ENST00000561781 CNGB1Q14028 1251 aaPredicted RBP24.32■■□□□ 1.48
RAB40C-206ENST00000561781 KIF15Q9NS87 1388 aa24.31■■□□□ 1.48
RAB40C-206ENST00000561781 POLR1AO95602 1720 aaPredicted RBP24.31■■□□□ 1.48
RAB40C-206ENST00000561781 L3MBTL2Q969R5 705 aa24.31■■□□□ 1.48
RAB40C-206ENST00000561781 SHANK2Q9UPX8 1470 aa24.31■■□□□ 1.48
RAB40C-206ENST00000561781 ARHGEF40Q8TER5 1519 aa24.31■■□□□ 1.48
RAB40C-206ENST00000561781 CENPJQ9HC77 1338 aaPredicted RBP24.3■■□□□ 1.48
RAB40C-206ENST00000561781 FGD1P98174 961 aa24.3■■□□□ 1.48
RAB40C-206ENST00000561781 SLC4A3P48751 1232 aa24.29■■□□□ 1.48
RAB40C-206ENST00000561781 A0A0U1RQG5 324 aaPredicted RBP24.29■■□□□ 1.48
RAB40C-206ENST00000561781 MLECQ14165 292 aa24.27■■□□□ 1.48
RAB40C-206ENST00000561781 MAST1Q9Y2H9 1570 aa24.27■■□□□ 1.48
RAB40C-206ENST00000561781 DHX29Q7Z478 1369 aaKnown RBP24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms