RNA–Protein interactions for RNA: ENST00000560970.5

TPM1-227, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,039 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-227ENST00000560970 NEURL4Q96JN8 1562 aa17.19■□□□□ 0.34
TPM1-227ENST00000560970 A2ML1A8K2U0 1454 aa17.19■□□□□ 0.34
TPM1-227ENST00000560970 PZPP20742 1482 aa17.18■□□□□ 0.34
TPM1-227ENST00000560970 CEP152O94986 1710 aa17.17■□□□□ 0.34
TPM1-227ENST00000560970 ZNF644Q9H582 1327 aaPredicted RBP17.17■□□□□ 0.34
TPM1-227ENST00000560970 DHX29Q7Z478 1369 aaKnown RBP17.15■□□□□ 0.34
TPM1-227ENST00000560970 VPS8Q8N3P4 1428 aa17.14■□□□□ 0.33
TPM1-227ENST00000560970 LRRC9Q6ZRR7 1453 aa17.14■□□□□ 0.33
TPM1-227ENST00000560970 GGT6Q6P531 493 aa17.14■□□□□ 0.33
TPM1-227ENST00000560970 PPP6R1Q9UPN7 881 aa17.14■□□□□ 0.33
TPM1-227ENST00000560970 DEPDC5O75140 1603 aa17.14■□□□□ 0.33
TPM1-227ENST00000560970 MROH1Q8NDA8 1641 aa17.13■□□□□ 0.33
TPM1-227ENST00000560970 MAP3K1Q13233 1512 aa17.12■□□□□ 0.33
TPM1-227ENST00000560970 IQGAP1P46940 1657 aa17.12■□□□□ 0.33
TPM1-227ENST00000560970 PKD2Q13563 968 aa17.1■□□□□ 0.33
TPM1-227ENST00000560970 NLRP1Q9C000 1473 aa17.1■□□□□ 0.33
TPM1-227ENST00000560970 ABCC3O15438 1527 aa17.1■□□□□ 0.33
TPM1-227ENST00000560970 NCKAP5LQ9HCH0 1330 aa17.09■□□□□ 0.33
TPM1-227ENST00000560970 TNRQ92752 1358 aa17.09■□□□□ 0.33
TPM1-227ENST00000560970 CPS1P31327 1500 aa17.09■□□□□ 0.33
TPM1-227ENST00000560970 UGGT1Q9NYU2 1555 aa17.08■□□□□ 0.32
TPM1-227ENST00000560970 ZNF335Q9H4Z2 1342 aaPredicted RBP17.08■□□□□ 0.32
TPM1-227ENST00000560970 SYNMO15061 1565 aa17.07■□□□□ 0.32
TPM1-227ENST00000560970 DISP3Q9P2K9 1392 aa17.07■□□□□ 0.32
TPM1-227ENST00000560970 UBR1Q8IWV7 1749 aa17.07■□□□□ 0.32
TPM1-227ENST00000560970 PRDM15P57071 1507 aaPredicted RBP17.06■□□□□ 0.32
TPM1-227ENST00000560970 VWDEQ8N2E2 1590 aa17.06■□□□□ 0.32
TPM1-227ENST00000560970 MYOM3Q5VTT5 1437 aa17.04■□□□□ 0.32
TPM1-227ENST00000560970 KIF3BO15066 747 aa17.04■□□□□ 0.32
TPM1-227ENST00000560970 RSPH4AQ5TD94 716 aa17.04■□□□□ 0.32
TPM1-227ENST00000560970 SHANK2Q9UPX8 1470 aa17.04■□□□□ 0.32
TPM1-227ENST00000560970 PTPN23Q9H3S7 1636 aa17.03■□□□□ 0.32
TPM1-227ENST00000560970 STRCP1A6NGW2 1772 aa17.03■□□□□ 0.32
TPM1-227ENST00000560970 DUOX2Q9NRD8 1548 aa17.03■□□□□ 0.32
TPM1-227ENST00000560970 CFAP65Q6ZU64 1925 aaKnown RBP17.03■□□□□ 0.32
TPM1-227ENST00000560970 MIA2Q96PC5 1412 aa17.03■□□□□ 0.32
TPM1-227ENST00000560970 ERVK-7P63135 1459 aa17.02■□□□□ 0.32
TPM1-227ENST00000560970 MED14O60244 1454 aa17.01■□□□□ 0.31
TPM1-227ENST00000560970 WASHC2CQ9Y4E1 1318 aa16.99■□□□□ 0.31
TPM1-227ENST00000560970 KDM5AP29375 1690 aaKnown RBP16.98■□□□□ 0.31
TPM1-227ENST00000560970 NPHP4O75161 1426 aaPredicted RBP16.96■□□□□ 0.31
TPM1-227ENST00000560970 ERBINQ96RT1 1412 aa16.96■□□□□ 0.31
TPM1-227ENST00000560970 TSPY4P0CV99 314 aa16.96■□□□□ 0.31
TPM1-227ENST00000560970 TSPY10P0CW01 314 aa16.96■□□□□ 0.31
TPM1-227ENST00000560970 FBXO31Q5XUX0 539 aaPredicted RBP16.96■□□□□ 0.31
TPM1-227ENST00000560970 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.96■□□□□ 0.311e-7■■□□□ 13.6
TPM1-227ENST00000560970 MED1Q15648 1581 aaPredicted RBP16.96■□□□□ 0.31
TPM1-227ENST00000560970 UBAP1LF5GYI3 381 aa16.95■□□□□ 0.3
TPM1-227ENST00000560970 PIK3C2BO00750 1634 aa16.95■□□□□ 0.3
TPM1-227ENST00000560970 ALKQ9UM73 1620 aa16.95■□□□□ 0.3
TPM1-227ENST00000560970 XIRP1Q702N8 1843 aaKnown RBP16.93■□□□□ 0.3
TPM1-227ENST00000560970 ILDR2Q71H61 639 aa16.93■□□□□ 0.3
TPM1-227ENST00000560970 SLIT1O75093 1534 aa16.91■□□□□ 0.3
TPM1-227ENST00000560970 KIF15Q9NS87 1388 aa16.9■□□□□ 0.3
TPM1-227ENST00000560970 SCAF11Q99590 1463 aaKnown RBP16.9■□□□□ 0.3
TPM1-227ENST00000560970 DAPK1P53355 1430 aa16.89■□□□□ 0.29
TPM1-227ENST00000560970 ANKLE2Q86XL3 938 aa16.89■□□□□ 0.29
TPM1-227ENST00000560970 THEMISQ8N1K5 641 aaPredicted RBP16.89■□□□□ 0.29
TPM1-227ENST00000560970 ABCC5O15440 1437 aa16.88■□□□□ 0.29
TPM1-227ENST00000560970 ARHGAP31Q2M1Z3 1444 aa16.88■□□□□ 0.29
TPM1-227ENST00000560970 ARHGAP23Q9P227 1491 aa16.88■□□□□ 0.29
TPM1-227ENST00000560970 EFCAB6Q5THR3 1501 aa16.88■□□□□ 0.29
TPM1-227ENST00000560970 KANK4Q5T7N3 995 aaPredicted RBP16.88■□□□□ 0.29
TPM1-227ENST00000560970 FGD6Q6ZV73 1430 aa16.87■□□□□ 0.29
TPM1-227ENST00000560970 LMTK2Q8IWU2 1503 aa16.87■□□□□ 0.29
TPM1-227ENST00000560970 SOCS7O14512 581 aa16.87■□□□□ 0.29
TPM1-227ENST00000560970 LRRC7Q96NW7 1537 aa16.86■□□□□ 0.29
TPM1-227ENST00000560970 ADGRB3O60242 1522 aa16.85■□□□□ 0.29
TPM1-227ENST00000560970 GCC2Q8IWJ2 1684 aa16.85■□□□□ 0.29
TPM1-227ENST00000560970 MYO5BQ9ULV0 1848 aa16.84■□□□□ 0.29
TPM1-227ENST00000560970 SCAF1Q9H7N4 1312 aaKnown RBP16.83■□□□□ 0.28
TPM1-227ENST00000560970 TET3O43151 1660 aa16.82■□□□□ 0.28
TPM1-227ENST00000560970 ADGRL2O95490 1459 aa16.82■□□□□ 0.28
TPM1-227ENST00000560970 TOM1O60784 492 aa16.82■□□□□ 0.28
TPM1-227ENST00000560970 UNC13BO14795 1591 aa16.8■□□□□ 0.28
TPM1-227ENST00000560970 NWD1Q149M9 1564 aa16.8■□□□□ 0.28
TPM1-227ENST00000560970 KANK1Q14678 1352 aa16.79■□□□□ 0.28
TPM1-227ENST00000560970 PIP4K2BP78356 416 aa16.79■□□□□ 0.28
TPM1-227ENST00000560970 HSPA1LP34931 641 aa16.78■□□□□ 0.28
TPM1-227ENST00000560970 ANKRD30AQ9BXX3 1397 aa16.77■□□□□ 0.28
TPM1-227ENST00000560970 APLP2Q06481 763 aa16.75■□□□□ 0.27
TPM1-227ENST00000560970 RPRD2Q5VT52 1461 aaKnown RBP16.74■□□□□ 0.27
TPM1-227ENST00000560970 RRP7BPQ9NSQ0 103 aa16.74■□□□□ 0.27
TPM1-227ENST00000560970 TMEM2Q9UHN6 1383 aa16.74■□□□□ 0.27
TPM1-227ENST00000560970 NOS1P29475 1434 aa16.73■□□□□ 0.27
TPM1-227ENST00000560970 ROBO1Q9Y6N7 1651 aa16.73■□□□□ 0.27
TPM1-227ENST00000560970 NKTRP30414 1462 aaKnown RBP16.73■□□□□ 0.27
TPM1-227ENST00000560970 E9PCH4 1651 aa16.72■□□□□ 0.27
TPM1-227ENST00000560970 IQGAP3Q86VI3 1631 aa16.71■□□□□ 0.27
TPM1-227ENST00000560970 CHD2O14647 1828 aaKnown RBP16.71■□□□□ 0.27
TPM1-227ENST00000560970 TMEM131LA2VDJ0 1609 aa16.7■□□□□ 0.26
TPM1-227ENST00000560970 LTKP29376 864 aa16.69■□□□□ 0.26
TPM1-227ENST00000560970 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.69■□□□□ 0.261e-6■■■□□ 19
TPM1-227ENST00000560970 TXNDC2Q86VQ3 553 aa16.68■□□□□ 0.26
TPM1-227ENST00000560970 EID1Q9Y6B2 187 aa16.68■□□□□ 0.26
TPM1-227ENST00000560970 ANKRD50Q9ULJ7 1429 aa16.67■□□□□ 0.26
TPM1-227ENST00000560970 DIP2AQ14689 1571 aa16.66■□□□□ 0.26
TPM1-227ENST00000560970 PHLPP1O60346 1717 aa16.65■□□□□ 0.26
TPM1-227ENST00000560970 SPHKAPQ2M3C7 1700 aa16.65■□□□□ 0.26
TPM1-227ENST00000560970 ZFYVE9O95405 1425 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms