RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 STRCQ7RTU9 1775 aa21.96■■□□□ 1.11
TPM1-223ENST00000560445 SHANK2Q9UPX8 1470 aa21.95■■□□□ 1.1
TPM1-223ENST00000560445 WASHC2CQ9Y4E1 1318 aa21.94■■□□□ 1.1
TPM1-223ENST00000560445 NCOA1Q15788 1441 aa21.94■■□□□ 1.1
TPM1-223ENST00000560445 ZC3H13Q5T200 1668 aaKnown RBP21.93■■□□□ 1.1
TPM1-223ENST00000560445 RNF17Q9BXT8 1623 aaKnown RBP21.92■■□□□ 1.1
TPM1-223ENST00000560445 PTPN23Q9H3S7 1636 aa21.92■■□□□ 1.1
TPM1-223ENST00000560445 CEP170BQ9Y4F5 1589 aaPredicted RBP21.92■■□□□ 1.1
TPM1-223ENST00000560445 CAMSAP1Q5T5Y3 1602 aa21.91■■□□□ 1.1
TPM1-223ENST00000560445 DUOX2Q9NRD8 1548 aa21.91■■□□□ 1.1
TPM1-223ENST00000560445 PZPP20742 1482 aa21.91■■□□□ 1.1
TPM1-223ENST00000560445 PLA2R1Q13018 1463 aa21.91■■□□□ 1.1
TPM1-223ENST00000560445 CROCC2H7BZ55 1655 aa21.9■■□□□ 1.1
TPM1-223ENST00000560445 FGD6Q6ZV73 1430 aa21.89■■□□□ 1.1
TPM1-223ENST00000560445 CERKQ8TCT0 537 aa21.89■■□□□ 1.09
TPM1-223ENST00000560445 A2ML1A8K2U0 1454 aa21.88■■□□□ 1.09
TPM1-223ENST00000560445 TNRQ92752 1358 aa21.87■■□□□ 1.09
TPM1-223ENST00000560445 PKD2Q13563 968 aa21.87■■□□□ 1.09
TPM1-223ENST00000560445 TCOF1Q13428 1488 aaKnown RBP21.87■■□□□ 1.09
TPM1-223ENST00000560445 DNMT1P26358 1616 aaKnown RBP21.86■■□□□ 1.09
TPM1-223ENST00000560445 ERBINQ96RT1 1412 aa21.86■■□□□ 1.09
TPM1-223ENST00000560445 KIF15Q9NS87 1388 aa21.84■■□□□ 1.09
TPM1-223ENST00000560445 NLRP1Q9C000 1473 aa21.83■■□□□ 1.09
TPM1-223ENST00000560445 DAPK1P53355 1430 aa21.83■■□□□ 1.09
TPM1-223ENST00000560445 ABCC5O15440 1437 aa21.82■■□□□ 1.08
TPM1-223ENST00000560445 ANKRD30AQ9BXX3 1397 aa21.82■■□□□ 1.08
TPM1-223ENST00000560445 ABCC3O15438 1527 aa21.81■■□□□ 1.08
TPM1-223ENST00000560445 IQSEC2Q5JU85 1478 aa21.79■■□□□ 1.08
TPM1-223ENST00000560445 KANK1Q14678 1352 aa21.78■■□□□ 1.08
TPM1-223ENST00000560445 PRDM15P57071 1507 aaPredicted RBP21.78■■□□□ 1.08
TPM1-223ENST00000560445 THEMISQ8N1K5 641 aaPredicted RBP21.76■■□□□ 1.07
TPM1-223ENST00000560445 MROH1Q8NDA8 1641 aa21.75■■□□□ 1.07
TPM1-223ENST00000560445 POLR1AO95602 1720 aaPredicted RBP21.75■■□□□ 1.07
TPM1-223ENST00000560445 SPATA31D1Q6ZQQ2 1576 aa21.74■■□□□ 1.07
TPM1-223ENST00000560445 FBXO31Q5XUX0 539 aaPredicted RBP21.74■■□□□ 1.07
TPM1-223ENST00000560445 RRP7BPQ9NSQ0 103 aa21.74■■□□□ 1.07
TPM1-223ENST00000560445 NCKAP5LQ9HCH0 1330 aa21.74■■□□□ 1.07
TPM1-223ENST00000560445 UGGT1Q9NYU2 1555 aa21.73■■□□□ 1.07
TPM1-223ENST00000560445 DEPDC5O75140 1603 aa21.73■■□□□ 1.07
TPM1-223ENST00000560445 CEP152O94986 1710 aa21.72■■□□□ 1.07
TPM1-223ENST00000560445 ARHGAP31Q2M1Z3 1444 aa21.72■■□□□ 1.07
TPM1-223ENST00000560445 ERVK-7P63135 1459 aa21.71■■□□□ 1.07
TPM1-223ENST00000560445 ADGRL2O95490 1459 aa21.71■■□□□ 1.07
TPM1-223ENST00000560445 LTBP4Q8N2S1 1624 aa21.7■■□□□ 1.06
TPM1-223ENST00000560445 FAM50AQ14320 339 aaKnown RBP21.7■■□□□ 1.06
TPM1-223ENST00000560445 ANKLE2Q86XL3 938 aa21.7■■□□□ 1.06
TPM1-223ENST00000560445 CHIC2Q9UKJ5 165 aa21.65■■□□□ 1.06
TPM1-223ENST00000560445 LMTK2Q8IWU2 1503 aa21.65■■□□□ 1.06
TPM1-223ENST00000560445 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.64■■□□□ 1.059e-7■■■□□ 19
TPM1-223ENST00000560445 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.63■■□□□ 1.051e-7■■□□□ 13.6
TPM1-223ENST00000560445 MED14O60244 1454 aa21.62■■□□□ 1.05
TPM1-223ENST00000560445 NEURL4Q96JN8 1562 aa21.61■■□□□ 1.05
TPM1-223ENST00000560445 ZNF335Q9H4Z2 1342 aaPredicted RBP21.61■■□□□ 1.05
TPM1-223ENST00000560445 CPS1P31327 1500 aa21.61■■□□□ 1.05
TPM1-223ENST00000560445 ANKRD50Q9ULJ7 1429 aa21.61■■□□□ 1.05
TPM1-223ENST00000560445 NPHP4O75161 1426 aaPredicted RBP21.6■■□□□ 1.05
TPM1-223ENST00000560445 VWDEQ8N2E2 1590 aa21.6■■□□□ 1.05
TPM1-223ENST00000560445 CFAP65Q6ZU64 1925 aaKnown RBP21.59■■□□□ 1.05
TPM1-223ENST00000560445 IQGAP1P46940 1657 aa21.58■■□□□ 1.05
TPM1-223ENST00000560445 ROCK1Q13464 1354 aa21.58■■□□□ 1.04
TPM1-223ENST00000560445 UBR1Q8IWV7 1749 aa21.58■■□□□ 1.04
TPM1-223ENST00000560445 KDM5AP29375 1690 aaKnown RBP21.57■■□□□ 1.04
TPM1-223ENST00000560445 EFCAB6Q5THR3 1501 aa21.57■■□□□ 1.04
TPM1-223ENST00000560445 RPRD2Q5VT52 1461 aaKnown RBP21.57■■□□□ 1.04
TPM1-223ENST00000560445 STAG3Q9UJ98 1225 aa21.55■■□□□ 1.04
TPM1-223ENST00000560445 EID1Q9Y6B2 187 aa21.54■■□□□ 1.04
TPM1-223ENST00000560445 SCAF11Q99590 1463 aaKnown RBP21.53■■□□□ 1.04
TPM1-223ENST00000560445 SLIT1O75093 1534 aa21.53■■□□□ 1.04
TPM1-223ENST00000560445 TET3O43151 1660 aa21.5■■□□□ 1.03
TPM1-223ENST00000560445 SLC52A1Q9NWF4 448 aa21.5■■□□□ 1.03
TPM1-223ENST00000560445 ARHGAP23Q9P227 1491 aa21.5■■□□□ 1.03
TPM1-223ENST00000560445 UNC13BO14795 1591 aa21.49■■□□□ 1.03
TPM1-223ENST00000560445 PIK3C2BO00750 1634 aa21.49■■□□□ 1.03
TPM1-223ENST00000560445 UBAP1LF5GYI3 381 aa21.49■■□□□ 1.03
TPM1-223ENST00000560445 GCC2Q8IWJ2 1684 aa21.48■■□□□ 1.03
TPM1-223ENST00000560445 NOS1P29475 1434 aa21.47■■□□□ 1.03
TPM1-223ENST00000560445 SYNMO15061 1565 aa21.47■■□□□ 1.03
TPM1-223ENST00000560445 TMEM2Q9UHN6 1383 aa21.47■■□□□ 1.03
TPM1-223ENST00000560445 TXNDC2Q86VQ3 553 aa21.46■■□□□ 1.03
TPM1-223ENST00000560445 ADGRB3O60242 1522 aa21.45■■□□□ 1.02
TPM1-223ENST00000560445 TOM1O60784 492 aa21.45■■□□□ 1.02
TPM1-223ENST00000560445 HDGFP51858 240 aaKnown RBP21.42■■□□□ 1.02
TPM1-223ENST00000560445 IQGAP3Q86VI3 1631 aa21.41■■□□□ 1.02
TPM1-223ENST00000560445 IDI1Q13907 227 aa21.41■■□□□ 1.02
TPM1-223ENST00000560445 ITGAEP38570 1179 aa21.39■■□□□ 1.01
TPM1-223ENST00000560445 RRBP1Q9P2E9 1410 aaKnown RBP21.38■■□□□ 1.01
TPM1-223ENST00000560445 NUP155O75694 1391 aa21.36■■□□□ 1.01
TPM1-223ENST00000560445 LTKP29376 864 aa21.36■■□□□ 1.01
TPM1-223ENST00000560445 SENP3Q9H4L4 574 aaPredicted RBP21.34■■□□□ 1.01
TPM1-223ENST00000560445 LRRC7Q96NW7 1537 aa21.34■■□□□ 1.01
TPM1-223ENST00000560445 SCAF1Q9H7N4 1312 aaKnown RBP21.33■■□□□ 1.01
TPM1-223ENST00000560445 PPARGC1BQ86YN6 1023 aaKnown RBP21.33■■□□□ 1.01
TPM1-223ENST00000560445 E9PCH4 1651 aa21.33■■□□□ 1
TPM1-223ENST00000560445 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.32■■□□□ 1
TPM1-223ENST00000560445 PPP1R15AO75807 674 aaPredicted RBP21.31■■□□□ 1
TPM1-223ENST00000560445 BCANQ96GW7 911 aa21.3■■□□□ 1
TPM1-223ENST00000560445 DISP3Q9P2K9 1392 aa21.3■■□□□ 1
TPM1-223ENST00000560445 STRCP1A6NGW2 1772 aa21.29■■□□□ 1
TPM1-223ENST00000560445 TMEM131LA2VDJ0 1609 aa21.29■■□□□ 1
TPM1-223ENST00000560445 PIP4K2BP78356 416 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms