RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.91□□□□□ -0.343e-6■□□□□ 10.3
USP3-217ENST00000560070 SHANK2Q9UPX8 1470 aa12.91□□□□□ -0.34
USP3-217ENST00000560070 CNTLNQ9NXG0 1405 aa12.9□□□□□ -0.34
USP3-217ENST00000560070 RRBP1Q9P2E9 1410 aaKnown RBP12.9□□□□□ -0.34
USP3-217ENST00000560070 RIMS1Q86UR5 1692 aaKnown RBP12.89□□□□□ -0.35
USP3-217ENST00000560070 DUOX2Q9NRD8 1548 aa12.89□□□□□ -0.35
USP3-217ENST00000560070 MAST1Q9Y2H9 1570 aa12.89□□□□□ -0.35
USP3-217ENST00000560070 ANKRD50Q9ULJ7 1429 aa12.88□□□□□ -0.35
USP3-217ENST00000560070 DNMT1P26358 1616 aaKnown RBP12.88□□□□□ -0.35
USP3-217ENST00000560070 TRIM52Q96A61 297 aa12.88□□□□□ -0.35
USP3-217ENST00000560070 KANK1Q14678 1352 aa12.88□□□□□ -0.35
USP3-217ENST00000560070 PLXNC1O60486 1568 aa12.88□□□□□ -0.35
USP3-217ENST00000560070 ROCK1Q13464 1354 aa12.87□□□□□ -0.35
USP3-217ENST00000560070 ERBINQ96RT1 1412 aa12.87□□□□□ -0.35
USP3-217ENST00000560070 ADGRL2O95490 1459 aa12.85□□□□□ -0.35
USP3-217ENST00000560070 ADGBQ8N7X0 1667 aa12.84□□□□□ -0.35
USP3-217ENST00000560070 NUP155O75694 1391 aa12.83□□□□□ -0.36
USP3-217ENST00000560070 UHRF1BP1Q6BDS2 1440 aa12.83□□□□□ -0.36
USP3-217ENST00000560070 TNRQ92752 1358 aa12.82□□□□□ -0.36
USP3-217ENST00000560070 CACNB1Q02641 598 aaPredicted RBP12.82□□□□□ -0.36
USP3-217ENST00000560070 NCKAP5LQ9HCH0 1330 aa12.82□□□□□ -0.36
USP3-217ENST00000560070 LMTK3Q96Q04 1460 aa12.8□□□□□ -0.36
USP3-217ENST00000560070 FER1L4A9Z1Z3 1794 aa12.8□□□□□ -0.36
USP3-217ENST00000560070 KDM5DQ9BY66 1539 aa12.8□□□□□ -0.36
USP3-217ENST00000560070 STAG3Q9UJ98 1225 aa12.79□□□□□ -0.36
USP3-217ENST00000560070 NAIPQ13075 1403 aa12.79□□□□□ -0.36
USP3-217ENST00000560070 NPATQ14207 1427 aa12.79□□□□□ -0.36
USP3-217ENST00000560070 ABCC3O15438 1527 aa12.78□□□□□ -0.36
USP3-217ENST00000560070 CLTCQ00610 1675 aaKnown RBP12.78□□□□□ -0.36
USP3-217ENST00000560070 CHGAP10645 457 aaKnown RBP12.78□□□□□ -0.36
USP3-217ENST00000560070 IDI1Q13907 227 aa12.78□□□□□ -0.36
USP3-217ENST00000560070 THEMISQ8N1K5 641 aaPredicted RBP12.77□□□□□ -0.37
USP3-217ENST00000560070 PZPP20742 1482 aa12.77□□□□□ -0.37
USP3-217ENST00000560070 CROCC2H7BZ55 1655 aa12.77□□□□□ -0.37
USP3-217ENST00000560070 SLC4A1APQ9BWU0 796 aaKnown RBP12.76□□□□□ -0.37
USP3-217ENST00000560070 PKD2Q13563 968 aa12.75□□□□□ -0.37
USP3-217ENST00000560070 C3P01024 1663 aa12.74□□□□□ -0.37
USP3-217ENST00000560070 MROH1Q8NDA8 1641 aa12.73□□□□□ -0.37
USP3-217ENST00000560070 HFM1A2PYH4 1435 aa12.73□□□□□ -0.37
USP3-217ENST00000560070 ANKLE2Q86XL3 938 aa12.73□□□□□ -0.37
USP3-217ENST00000560070 DMRT2Q9Y5R5 561 aa12.73□□□□□ -0.37
USP3-217ENST00000560070 RNF17Q9BXT8 1623 aaKnown RBP12.73□□□□□ -0.37
USP3-217ENST00000560070 EIF2AK4Q9P2K8 1649 aaKnown RBP12.73□□□□□ -0.37
USP3-217ENST00000560070 ERVK-7P63135 1459 aa12.72□□□□□ -0.37
USP3-217ENST00000560070 ARHGAP31Q2M1Z3 1444 aa12.72□□□□□ -0.37
USP3-217ENST00000560070 SETD5Q9C0A6 1442 aa12.71□□□□□ -0.37
USP3-217ENST00000560070 TXNDC2Q86VQ3 553 aa12.71□□□□□ -0.37
USP3-217ENST00000560070 MPHOSPH9Q99550 1183 aa12.71□□□□□ -0.37
USP3-217ENST00000560070 SLC52A1Q9NWF4 448 aa12.71□□□□□ -0.37
USP3-217ENST00000560070 NUTM2DQ5VT03 806 aaPredicted RBP12.7□□□□□ -0.38
USP3-217ENST00000560070 BCANQ96GW7 911 aa12.7□□□□□ -0.38
USP3-217ENST00000560070 PRDM15P57071 1507 aaPredicted RBP12.7□□□□□ -0.38
USP3-217ENST00000560070 A2ML1A8K2U0 1454 aa12.7□□□□□ -0.38
USP3-217ENST00000560070 LMTK2Q8IWU2 1503 aa12.68□□□□□ -0.38
USP3-217ENST00000560070 FAM135AQ9P2D6 1515 aa12.68□□□□□ -0.38
USP3-217ENST00000560070 MROH2AA6NES4 1674 aa12.68□□□□□ -0.38
USP3-217ENST00000560070 LTKP29376 864 aa12.68□□□□□ -0.38
USP3-217ENST00000560070 EID1Q9Y6B2 187 aa12.68□□□□□ -0.38
USP3-217ENST00000560070 RAB3GAP2Q9H2M9 1393 aa12.68□□□□□ -0.38
USP3-217ENST00000560070 VWDEQ8N2E2 1590 aa12.67□□□□□ -0.38
USP3-217ENST00000560070 NLRP1Q9C000 1473 aa12.66□□□□□ -0.38
USP3-217ENST00000560070 NOS1P29475 1434 aa12.66□□□□□ -0.38
USP3-217ENST00000560070 ZNF326Q5BKZ1 582 aaKnown RBP12.66□□□□□ -0.38
USP3-217ENST00000560070 CAMSAP1Q5T5Y3 1602 aa12.66□□□□□ -0.38
USP3-217ENST00000560070 CEP152O94986 1710 aa12.65□□□□□ -0.38
USP3-217ENST00000560070 SPATA31D1Q6ZQQ2 1576 aa12.64□□□□□ -0.39
USP3-217ENST00000560070 UGGT1Q9NYU2 1555 aa12.64□□□□□ -0.39
USP3-217ENST00000560070 DEPDC5O75140 1603 aa12.64□□□□□ -0.39
USP3-217ENST00000560070 PPP1R15AO75807 674 aaPredicted RBP12.64□□□□□ -0.39
USP3-217ENST00000560070 TRIM26Q12899 539 aaPredicted RBP12.64□□□□□ -0.39
USP3-217ENST00000560070 CEP170BQ9Y4F5 1589 aaPredicted RBP12.64□□□□□ -0.39
USP3-217ENST00000560070 PREX1Q8TCU6 1659 aa12.64□□□□□ -0.39
USP3-217ENST00000560070 SLC26A8Q96RN1 970 aa12.63□□□□□ -0.39
USP3-217ENST00000560070 ZNF335Q9H4Z2 1342 aaPredicted RBP12.62□□□□□ -0.39
USP3-217ENST00000560070 EFCAB6Q5THR3 1501 aa12.62□□□□□ -0.39
USP3-217ENST00000560070 HDGFP51858 240 aaKnown RBP12.62□□□□□ -0.39
USP3-217ENST00000560070 RGL3Q3MIN7 710 aa12.62□□□□□ -0.39
USP3-217ENST00000560070 ZC3H13Q5T200 1668 aaKnown RBP12.61□□□□□ -0.39
USP3-217ENST00000560070 UNC13BO14795 1591 aa12.61□□□□□ -0.39
USP3-217ENST00000560070 RPRD2Q5VT52 1461 aaKnown RBP12.61□□□□□ -0.39
USP3-217ENST00000560070 TMEM2Q9UHN6 1383 aa12.61□□□□□ -0.39
USP3-217ENST00000560070 PTPRTO14522 1441 aa12.61□□□□□ -0.39
USP3-217ENST00000560070 MYO3AQ8NEV4 1616 aa12.6□□□□□ -0.39
USP3-217ENST00000560070 HRCP23327 699 aa12.6□□□□□ -0.39
USP3-217ENST00000560070 CERKQ8TCT0 537 aa12.6□□□□□ -0.39
USP3-217ENST00000560070 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.59□□□□□ -0.39
USP3-217ENST00000560070 NPHP4O75161 1426 aaPredicted RBP12.59□□□□□ -0.39
USP3-217ENST00000560070 SETD1BQ9UPS6 1966 aaKnown RBP12.59□□□□□ -0.39
USP3-217ENST00000560070 ACIN1Q9UKV3 1341 aaKnown RBP12.59□□□□□ -0.39
USP3-217ENST00000560070 PLA2R1Q13018 1463 aa12.59□□□□□ -0.39
USP3-217ENST00000560070 SYNMO15061 1565 aa12.58□□□□□ -0.4
USP3-217ENST00000560070 MAPK8IP2Q13387 824 aaPredicted RBP12.58□□□□□ -0.4
USP3-217ENST00000560070 RIMS2Q9UQ26 1411 aa12.57□□□□□ -0.4
USP3-217ENST00000560070 IQGAP3Q86VI3 1631 aa12.57□□□□□ -0.4
USP3-217ENST00000560070 TET3O43151 1660 aa12.56□□□□□ -0.4
USP3-217ENST00000560070 CFAP65Q6ZU64 1925 aaKnown RBP12.54□□□□□ -0.4
USP3-217ENST00000560070 SCAF11Q99590 1463 aaKnown RBP12.54□□□□□ -0.4
USP3-217ENST00000560070 RBM33Q96EV2 1170 aaKnown RBP12.54□□□□□ -0.4
USP3-217ENST00000560070 PCGF6Q9BYE7 350 aa12.54□□□□□ -0.4
USP3-217ENST00000560070 GCC2Q8IWJ2 1684 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms