RNA–Protein interactions for RNA: ENST00000559399.5

LRRC28-213, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-213ENST00000559399 CEP170BQ9Y4F5 1589 aaPredicted RBP23.54■■□□□ 1.36
LRRC28-213ENST00000559399 PLA2R1Q13018 1463 aa23.53■■□□□ 1.36
LRRC28-213ENST00000559399 WASHC2CQ9Y4E1 1318 aa23.52■■□□□ 1.36
LRRC28-213ENST00000559399 ZNF142P52746 1687 aaPredicted RBP23.51■■□□□ 1.35
LRRC28-213ENST00000559399 NCKAP5LQ9HCH0 1330 aa23.51■■□□□ 1.35
LRRC28-213ENST00000559399 PZPP20742 1482 aa23.5■■□□□ 1.35
LRRC28-213ENST00000559399 APLP2Q06481 763 aa23.5■■□□□ 1.35
LRRC28-213ENST00000559399 PKD2Q13563 968 aa23.5■■□□□ 1.35
LRRC28-213ENST00000559399 MAST1Q9Y2H9 1570 aa23.49■■□□□ 1.35
LRRC28-213ENST00000559399 TNRQ92752 1358 aa23.49■■□□□ 1.35
LRRC28-213ENST00000559399 A2ML1A8K2U0 1454 aa23.49■■□□□ 1.35
LRRC28-213ENST00000559399 TCOF1Q13428 1488 aaKnown RBP23.48■■□□□ 1.35
LRRC28-213ENST00000559399 FBXO31Q5XUX0 539 aaPredicted RBP23.47■■□□□ 1.35
LRRC28-213ENST00000559399 LTBP4Q8N2S1 1624 aa23.46■■□□□ 1.35
LRRC28-213ENST00000559399 IQSEC2Q5JU85 1478 aa23.41■■□□□ 1.34
LRRC28-213ENST00000559399 ZNF335Q9H4Z2 1342 aaPredicted RBP23.4■■□□□ 1.34
LRRC28-213ENST00000559399 DNMT1P26358 1616 aaKnown RBP23.4■■□□□ 1.34
LRRC28-213ENST00000559399 RNF17Q9BXT8 1623 aaKnown RBP23.4■■□□□ 1.34
LRRC28-213ENST00000559399 ABCC3O15438 1527 aa23.38■■□□□ 1.33
LRRC28-213ENST00000559399 NLRP1Q9C000 1473 aa23.38■■□□□ 1.33
LRRC28-213ENST00000559399 SHANK2Q9UPX8 1470 aa23.38■■□□□ 1.33
LRRC28-213ENST00000559399 EIF2AK4Q9P2K8 1649 aaKnown RBP23.38■■□□□ 1.33
LRRC28-213ENST00000559399 DUOX2Q9NRD8 1548 aa23.38■■□□□ 1.33
LRRC28-213ENST00000559399 ABCC5O15440 1437 aa23.37■■□□□ 1.33
LRRC28-213ENST00000559399 KIF15Q9NS87 1388 aa23.37■■□□□ 1.33
LRRC28-213ENST00000559399 FGD6Q6ZV73 1430 aa23.35■■□□□ 1.33
LRRC28-213ENST00000559399 PTPN23Q9H3S7 1636 aa23.34■■□□□ 1.33
LRRC28-213ENST00000559399 ZC3H13Q5T200 1668 aaKnown RBP23.33■■□□□ 1.33
LRRC28-213ENST00000559399 THEMISQ8N1K5 641 aaPredicted RBP23.33■■□□□ 1.33
LRRC28-213ENST00000559399 MROH1Q8NDA8 1641 aa23.33■■□□□ 1.32
LRRC28-213ENST00000559399 DAPK1P53355 1430 aa23.33■■□□□ 1.32
LRRC28-213ENST00000559399 ERBINQ96RT1 1412 aa23.33■■□□□ 1.32
LRRC28-213ENST00000559399 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.32■■□□□ 1.32
LRRC28-213ENST00000559399 RRP7BPQ9NSQ0 103 aa23.32■■□□□ 1.32
LRRC28-213ENST00000559399 ERVK-7P63135 1459 aa23.3■■□□□ 1.32
LRRC28-213ENST00000559399 ANKLE2Q86XL3 938 aa23.3■■□□□ 1.32
LRRC28-213ENST00000559399 SPATA31D1Q6ZQQ2 1576 aa23.3■■□□□ 1.32
LRRC28-213ENST00000559399 UGGT1Q9NYU2 1555 aa23.3■■□□□ 1.32
LRRC28-213ENST00000559399 NEURL4Q96JN8 1562 aa23.28■■□□□ 1.32
LRRC28-213ENST00000559399 PRDM15P57071 1507 aaPredicted RBP23.27■■□□□ 1.32
LRRC28-213ENST00000559399 CROCC2H7BZ55 1655 aa23.26■■□□□ 1.31
LRRC28-213ENST00000559399 ANKRD30AQ9BXX3 1397 aa23.25■■□□□ 1.31
LRRC28-213ENST00000559399 UBAP1LF5GYI3 381 aa23.23■■□□□ 1.31
LRRC28-213ENST00000559399 NPHP4O75161 1426 aaPredicted RBP23.23■■□□□ 1.31
LRRC28-213ENST00000559399 ARHGAP31Q2M1Z3 1444 aa23.23■■□□□ 1.31
LRRC28-213ENST00000559399 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.22■■□□□ 1.31
LRRC28-213ENST00000559399 CHIC2Q9UKJ5 165 aa23.22■■□□□ 1.31
LRRC28-213ENST00000559399 MED14O60244 1454 aa23.22■■□□□ 1.31
LRRC28-213ENST00000559399 POLR1AO95602 1720 aaPredicted RBP23.22■■□□□ 1.31
LRRC28-213ENST00000559399 KANK1Q14678 1352 aa23.21■■□□□ 1.31
LRRC28-213ENST00000559399 CPS1P31327 1500 aa23.2■■□□□ 1.3
LRRC28-213ENST00000559399 DEPDC5O75140 1603 aa23.19■■□□□ 1.3
LRRC28-213ENST00000559399 CEP152O94986 1710 aa23.18■■□□□ 1.3
LRRC28-213ENST00000559399 FAM50AQ14320 339 aaKnown RBP23.17■■□□□ 1.3
LRRC28-213ENST00000559399 ADGRL2O95490 1459 aa23.15■■□□□ 1.3
LRRC28-213ENST00000559399 DISP3Q9P2K9 1392 aa23.14■■□□□ 1.3
LRRC28-213ENST00000559399 VWDEQ8N2E2 1590 aa23.14■■□□□ 1.3
LRRC28-213ENST00000559399 LMTK2Q8IWU2 1503 aa23.13■■□□□ 1.29
LRRC28-213ENST00000559399 SCAF11Q99590 1463 aaKnown RBP23.11■■□□□ 1.29
LRRC28-213ENST00000559399 IQGAP1P46940 1657 aa23.1■■□□□ 1.29
LRRC28-213ENST00000559399 ARHGAP23Q9P227 1491 aa23.09■■□□□ 1.29
LRRC28-213ENST00000559399 SLIT1O75093 1534 aa23.08■■□□□ 1.29
LRRC28-213ENST00000559399 UBR1Q8IWV7 1749 aa23.08■■□□□ 1.29
LRRC28-213ENST00000559399 TOM1O60784 492 aa23.08■■□□□ 1.29
LRRC28-213ENST00000559399 ANKRD50Q9ULJ7 1429 aa23.08■■□□□ 1.28
LRRC28-213ENST00000559399 TXNDC2Q86VQ3 553 aa23.07■■□□□ 1.28
LRRC28-213ENST00000559399 LTKP29376 864 aa23.06■■□□□ 1.28
LRRC28-213ENST00000559399 STAG3Q9UJ98 1225 aa23.06■■□□□ 1.28
LRRC28-213ENST00000559399 EID1Q9Y6B2 187 aa23.06■■□□□ 1.28
LRRC28-213ENST00000559399 SCAF1Q9H7N4 1312 aaKnown RBP23.06■■□□□ 1.28
LRRC28-213ENST00000559399 EFCAB6Q5THR3 1501 aa23.05■■□□□ 1.28
LRRC28-213ENST00000559399 TMEM2Q9UHN6 1383 aa23.04■■□□□ 1.28
LRRC28-213ENST00000559399 PIP4K2BP78356 416 aa23.04■■□□□ 1.28
LRRC28-213ENST00000559399 NOS1P29475 1434 aa23.03■■□□□ 1.28
LRRC28-213ENST00000559399 IDI1Q13907 227 aa23.02■■□□□ 1.28
LRRC28-213ENST00000559399 PIK3C2BO00750 1634 aa23.01■■□□□ 1.27
LRRC28-213ENST00000559399 LRRC7Q96NW7 1537 aa23■■□□□ 1.27
LRRC28-213ENST00000559399 SYNMO15061 1565 aa22.99■■□□□ 1.27
LRRC28-213ENST00000559399 RPRD2Q5VT52 1461 aaKnown RBP22.98■■□□□ 1.27
LRRC28-213ENST00000559399 HSPA1LP34931 641 aa22.98■■□□□ 1.27
LRRC28-213ENST00000559399 SLC52A1Q9NWF4 448 aa22.98■■□□□ 1.27
LRRC28-213ENST00000559399 ILDR2Q71H61 639 aa22.97■■□□□ 1.27
LRRC28-213ENST00000559399 ROCK1Q13464 1354 aa22.97■■□□□ 1.27
LRRC28-213ENST00000559399 ADGRB3O60242 1522 aa22.95■■□□□ 1.26
LRRC28-213ENST00000559399 KDM5AP29375 1690 aaKnown RBP22.94■■□□□ 1.26
LRRC28-213ENST00000559399 CFAP65Q6ZU64 1925 aaKnown RBP22.93■■□□□ 1.26
LRRC28-213ENST00000559399 ALKQ9UM73 1620 aa22.92■■□□□ 1.26
LRRC28-213ENST00000559399 STRCP1A6NGW2 1772 aa22.91■■□□□ 1.26
LRRC28-213ENST00000559399 UNC13BO14795 1591 aa22.9■■□□□ 1.26
LRRC28-213ENST00000559399 TET3O43151 1660 aa22.89■■□□□ 1.25
LRRC28-213ENST00000559399 ITGAEP38570 1179 aa22.88■■□□□ 1.25
LRRC28-213ENST00000559399 PPARGC1BQ86YN6 1023 aaKnown RBP22.88■■□□□ 1.25
LRRC28-213ENST00000559399 SLC26A8Q96RN1 970 aa22.86■■□□□ 1.25
LRRC28-213ENST00000559399 SOCS7O14512 581 aa22.84■■□□□ 1.25
LRRC28-213ENST00000559399 KCNA6P17658 529 aa22.84■■□□□ 1.25
LRRC28-213ENST00000559399 ZFYVE9O95405 1425 aa22.83■■□□□ 1.25
LRRC28-213ENST00000559399 BCANQ96GW7 911 aa22.83■■□□□ 1.25
LRRC28-213ENST00000559399 NUP155O75694 1391 aa22.83■■□□□ 1.25
LRRC28-213ENST00000559399 TMEM94Q12767 1356 aa22.82■■□□□ 1.24
LRRC28-213ENST00000559399 RIMS2Q9UQ26 1411 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms