RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 PCDHGA10Q9Y5H3 936 aa4.45□□□□□ -1.7
USP3-209ENST00000558925 ZNF787Q6DD87 383 aa4.44□□□□□ -1.7
USP3-209ENST00000558925 PRKD2Q9BZL6 878 aa4.44□□□□□ -1.7
USP3-209ENST00000558925 KIAA1468Q9P260 1216 aa4.44□□□□□ -1.7
USP3-209ENST00000558925 NYAP1Q6ZVC0 841 aa4.43□□□□□ -1.7
USP3-209ENST00000558925 LAPTM4BQ86VI4 370 aa4.43□□□□□ -1.7
USP3-209ENST00000558925 NKX1-1Q15270 411 aaPredicted RBP4.42□□□□□ -1.7
USP3-209ENST00000558925 TJAP1Q5JTD0 557 aa4.41□□□□□ -1.7
USP3-209ENST00000558925 EMILIN3Q9NT22 766 aa4.41□□□□□ -1.7
USP3-209ENST00000558925 HPS5Q9UPZ3 1129 aa4.41□□□□□ -1.7
USP3-209ENST00000558925 POTECB2RU33 542 aa4.4□□□□□ -1.71
USP3-209ENST00000558925 PPP1R18Q6NYC8 613 aa4.4□□□□□ -1.71
USP3-209ENST00000558925 TSR3Q9UJK0 312 aaKnown RBP4.4□□□□□ -1.71
USP3-209ENST00000558925 HS6ST3Q8IZP7 471 aa4.39□□□□□ -1.71
USP3-209ENST00000558925 FAM98CQ17RN3 349 aaKnown RBP4.38□□□□□ -1.71
USP3-209ENST00000558925 LCE2AQ5TA79 106 aaPredicted RBP4.38□□□□□ -1.71
USP3-209ENST00000558925 TRIM67Q6ZTA4 783 aa4.38□□□□□ -1.71
USP3-209ENST00000558925 CDKN2AIPQ9NXV6 580 aaPredicted RBP4.38□□□□□ -1.71
USP3-209ENST00000558925 PDZRN3Q9UPQ7 1066 aa4.38□□□□□ -1.71
USP3-209ENST00000558925 TRIM6-TRIM34B2RNG4 842 aa4.37□□□□□ -1.71
USP3-209ENST00000558925 C6orf132Q5T0Z8 1188 aa4.37□□□□□ -1.71
USP3-209ENST00000558925 TYW1BQ6NUM6 668 aa4.37□□□□□ -1.71
USP3-209ENST00000558925 ZNF516Q92618 1163 aa4.37□□□□□ -1.71
USP3-209ENST00000558925 LRCH3Q96II8 777 aa4.37□□□□□ -1.71
USP3-209ENST00000558925 V9GY48 417 aaPredicted RBP4.37□□□□□ -1.71
USP3-209ENST00000558925 C3orf80F5H4A9 247 aa4.36□□□□□ -1.71
USP3-209ENST00000558925 ONECUT3O60422 494 aaPredicted RBP4.36□□□□□ -1.71
USP3-209ENST00000558925 PHF14O94880 888 aa4.36□□□□□ -1.71
USP3-209ENST00000558925 MAP3K9P80192 1104 aa4.36□□□□□ -1.71
USP3-209ENST00000558925 NKX2-3Q8TAU0 364 aa4.36□□□□□ -1.71
USP3-209ENST00000558925 MTRQ99707 1265 aa4.36□□□□□ -1.71
USP3-209ENST00000558925 FBXW7Q969H0 707 aa4.35□□□□□ -1.71
USP3-209ENST00000558925 EMID1Q96A84 441 aaPredicted RBP4.35□□□□□ -1.71
USP3-209ENST00000558925 TSKSQ9UJT2 592 aa4.35□□□□□ -1.71
USP3-209ENST00000558925 PDE4AP27815 886 aa4.34□□□□□ -1.71
USP3-209ENST00000558925 MFSD10Q14728 455 aa4.34□□□□□ -1.71
USP3-209ENST00000558925 LARP6Q9BRS8 491 aaKnown RBP4.34□□□□□ -1.71
USP3-209ENST00000558925 EIF4ENIF1Q9NRA8 985 aaKnown RBP4.34□□□□□ -1.71
USP3-209ENST00000558925 SMAPO00193 183 aa4.33□□□□□ -1.72
USP3-209ENST00000558925 PPP4CP60510 307 aa4.33□□□□□ -1.72
USP3-209ENST00000558925 MYT1Q01538 1121 aa4.33□□□□□ -1.72
USP3-209ENST00000558925 SAMD7Q7Z3H4 446 aa4.33□□□□□ -1.72
USP3-209ENST00000558925 DDX27Q96GQ7 796 aaKnown RBP4.33□□□□□ -1.72
USP3-209ENST00000558925 RTN4Q9NQC3 1192 aaKnown RBP4.33□□□□□ -1.72
USP3-209ENST00000558925 FAM198AQ9UFP1 575 aa4.33□□□□□ -1.72
USP3-209ENST00000558925 RBM33Q96EV2 1170 aaKnown RBP4.32□□□□□ -1.72
USP3-209ENST00000558925 DNAJC5Q9H3Z4 198 aa4.32□□□□□ -1.72
USP3-209ENST00000558925 IL21Q9HBE4 155 aa4.32□□□□□ -1.72
USP3-209ENST00000558925 CHGAP10645 457 aaKnown RBP4.31□□□□□ -1.72
USP3-209ENST00000558925 APLP1P51693 650 aa4.31□□□□□ -1.72
USP3-209ENST00000558925 TSR1Q2NL82 804 aaKnown RBP4.31□□□□□ -1.72
USP3-209ENST00000558925 TREML4Q6UXN2 200 aa4.3□□□□□ -1.72
USP3-209ENST00000558925 CADPS2Q86UW7 1296 aa4.29□□□□□ -1.72
USP3-209ENST00000558925 EPAS1Q99814 870 aa4.29□□□□□ -1.72
USP3-209ENST00000558925 PRIM1P49642 420 aaKnown RBP4.28□□□□□ -1.72
USP3-209ENST00000558925 DDX12PQ92771 950 aa4.28□□□□□ -1.72
USP3-209ENST00000558925 LOC100996750A0A140TA64 210 aa4.27□□□□□ -1.73
USP3-209ENST00000558925 DPYSL4O14531 572 aa4.27□□□□□ -1.73
USP3-209ENST00000558925 ST8SIA5O15466 376 aa4.27□□□□□ -1.73
USP3-209ENST00000558925 GTPBP6O43824 516 aaPredicted RBP4.27□□□□□ -1.73
USP3-209ENST00000558925 COPS2P61201 443 aa4.27□□□□□ -1.73
USP3-209ENST00000558925 KRTAP4-6Q9BYQ5 205 aa4.27□□□□□ -1.73
USP3-209ENST00000558925 EN1Q05925 392 aaPredicted RBP4.26□□□□□ -1.73
USP3-209ENST00000558925 PKDCCQ504Y2 493 aa4.26□□□□□ -1.73
USP3-209ENST00000558925 LCE2CQ5TA81 110 aa4.26□□□□□ -1.73
USP3-209ENST00000558925 PACS2Q86VP3 889 aa4.26□□□□□ -1.73
USP3-209ENST00000558925 CDCA7LQ96GN5 454 aa4.26□□□□□ -1.73
USP3-209ENST00000558925 RNF223E7ERA6 249 aa4.25□□□□□ -1.73
USP3-209ENST00000558925 DGAT1O75907 488 aa4.25□□□□□ -1.73
USP3-209ENST00000558925 CAMK2BQ13554 666 aa4.25□□□□□ -1.73
USP3-209ENST00000558925 AMER1Q5JTC6 1135 aaPredicted RBP4.25□□□□□ -1.73
USP3-209ENST00000558925 GDF9O60383 454 aa4.24□□□□□ -1.73
USP3-209ENST00000558925 SLC19A1P41440 591 aa4.24□□□□□ -1.73
USP3-209ENST00000558925 PRSS12P56730 875 aa4.24□□□□□ -1.73
USP3-209ENST00000558925 PRR20EP86478 221 aa4.24□□□□□ -1.73
USP3-209ENST00000558925 PRR20CP86479 221 aa4.24□□□□□ -1.73
USP3-209ENST00000558925 PRR20DP86480 221 aa4.24□□□□□ -1.73
USP3-209ENST00000558925 PRR20BP86481 221 aa4.24□□□□□ -1.73
USP3-209ENST00000558925 PRR20AP86496 221 aa4.24□□□□□ -1.73
USP3-209ENST00000558925 NBR1Q14596 966 aa4.24□□□□□ -1.73
USP3-209ENST00000558925 SPRYD7Q5W111 196 aa4.24□□□□□ -1.73
USP3-209ENST00000558925 TATDN2Q93075 761 aa4.24□□□□□ -1.73
USP3-209ENST00000558925 AAASQ9NRG9 546 aa4.24□□□□□ -1.73
USP3-209ENST00000558925 DACH1Q9UI36 760 aa4.24□□□□□ -1.73
USP3-209ENST00000558925 FAM187AA6NFU0 413 aa4.23□□□□□ -1.73
USP3-209ENST00000558925 TNFRSF10AO00220 468 aa4.23□□□□□ -1.73
USP3-209ENST00000558925 PPEF1O14829 653 aaPredicted RBP4.23□□□□□ -1.73
USP3-209ENST00000558925 MAP3K7O43318 606 aa4.23□□□□□ -1.73
USP3-209ENST00000558925 RNF40O75150 1001 aa4.23□□□□□ -1.73
USP3-209ENST00000558925 ZPR1O75312 459 aa4.23□□□□□ -1.73
USP3-209ENST00000558925 LIAT1Q6ZQX7 453 aa4.23□□□□□ -1.73
USP3-209ENST00000558925 TMUB1Q9BVT8 246 aa4.23□□□□□ -1.73
USP3-209ENST00000558925 PNMA3Q9UL41 463 aa4.23□□□□□ -1.73
USP3-209ENST00000558925 TLL1O43897 1013 aa4.22□□□□□ -1.73
USP3-209ENST00000558925 ZNF598Q86UK7 904 aaKnown RBP4.22□□□□□ -1.73
USP3-209ENST00000558925 RYDENQ9NUL5 291 aaKnown RBP4.22□□□□□ -1.73
USP3-209ENST00000558925 GGCXP38435 758 aa4.21□□□□□ -1.74
USP3-209ENST00000558925 NFX1Q12986 1120 aaKnown RBP4.21□□□□□ -1.74
USP3-209ENST00000558925 NUDT18Q6ZVK8 323 aa4.21□□□□□ -1.74
USP3-209ENST00000558925 CDHR5Q9HBB8 845 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms